Wall clock time and date at job start Tue Mar 31 2020 23:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99827 * 2 1 4 4 H 1.48503 * 109.47033 * 179.71836 * 3 2 1 5 5 H 1.48506 * 109.47184 * 299.71811 * 3 2 1 6 6 H 1.48500 * 109.47388 * 59.71779 * 3 2 1 7 7 C 1.38811 * 120.00286 * 179.71430 * 2 1 3 8 8 H 1.08000 * 120.00386 * 204.84852 * 7 2 1 9 9 N 1.36944 * 119.99669 * 24.84912 * 7 2 1 10 10 C 1.47068 * 136.05764 * 4.86406 * 9 7 2 11 11 C 1.53753 * 87.88708 * 152.96667 * 10 9 7 12 12 C 1.53004 * 114.08550 * 139.78201 * 11 10 9 13 13 C 1.53001 * 109.46843 * 201.39350 * 12 11 10 14 14 O 1.42898 * 109.47254 * 184.99991 * 13 12 11 15 15 N 1.46498 * 114.57691 * 272.66552 * 11 10 9 16 16 C 1.34777 * 119.99956 * 279.63357 * 15 11 10 17 17 O 1.21587 * 120.00035 * 5.50684 * 16 15 11 18 18 C 1.47571 * 119.99921 * 185.51258 * 16 15 11 19 19 C 1.38697 * 120.43263 * 5.57418 * 18 16 15 20 20 C 1.39008 * 120.75051 * 179.77112 * 19 18 16 21 21 C 1.36343 * 121.19038 * 0.48734 * 20 19 18 22 22 C 1.40355 * 119.92661 * 359.77452 * 21 20 19 23 23 C 1.40677 * 122.10155 * 180.02562 * 22 21 20 24 24 C 1.36262 * 118.67124 * 179.97438 * 23 22 21 25 25 N 1.32516 * 121.83848 * 0.02562 * 24 23 22 26 26 C 1.31314 * 122.71779 * 359.95495 * 25 24 23 27 27 C 1.40137 * 119.91896 * 0.04420 * 26 25 24 28 28 C 1.47065 * 136.05560 * 185.24194 * 9 7 2 29 29 H 0.97003 * 119.99769 * 185.20136 * 1 2 3 30 30 H 1.08997 * 113.47058 * 267.70302 * 10 9 7 31 31 H 1.09000 * 113.46355 * 38.13823 * 10 9 7 32 32 H 1.08998 * 109.47214 * 321.38896 * 12 11 10 33 33 H 1.08994 * 109.47034 * 81.39547 * 12 11 10 34 34 H 1.08999 * 109.47320 * 305.00305 * 13 12 11 35 35 H 1.09002 * 109.47118 * 64.99743 * 13 12 11 36 36 H 0.96700 * 114.00366 * 180.02562 * 14 13 12 37 37 H 0.96998 * 119.99996 * 99.62250 * 15 11 10 38 38 H 1.08003 * 119.62821 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.40662 * 180.23642 * 20 19 18 40 40 H 1.07995 * 120.03674 * 179.78758 * 21 20 19 41 41 H 1.08002 * 120.66511 * 0.02562 * 23 22 21 42 42 H 1.08002 * 119.08524 * 180.02562 * 24 23 22 43 43 H 1.07994 * 120.04166 * 180.02562 * 26 25 24 44 44 H 1.08997 * 113.46869 * 321.86022 * 28 9 7 45 45 H 1.08999 * 113.47000 * 92.24486 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0069 5 1 1.8965 2.3935 -1.2160 6 1 1.8862 2.3995 1.2090 7 6 2.0103 -1.2021 0.0060 8 1 3.0153 -1.2434 0.3992 9 7 1.4207 -2.3356 -0.4868 10 6 0.1563 -2.6634 -1.1627 11 6 0.8789 -3.8546 -1.8131 12 6 0.0369 -5.1299 -1.8888 13 6 0.9592 -6.3419 -2.0353 14 8 0.1720 -7.5197 -2.2228 15 7 1.5660 -3.5391 -3.0679 16 6 0.8681 -3.4665 -4.2186 17 8 -0.3438 -3.5634 -4.2018 18 6 1.5749 -3.2696 -5.4990 19 6 2.9611 -3.2733 -5.5441 20 6 3.6336 -3.0932 -6.7473 21 6 2.9545 -2.8984 -7.9134 22 6 1.5511 -2.8821 -7.9122 23 6 0.8047 -2.6854 -9.0883 24 6 -0.5555 -2.6830 -9.0066 25 7 -1.1870 -2.8596 -7.8550 26 6 -0.5540 -3.0487 -6.7202 27 6 0.8470 -3.0685 -6.6961 28 6 1.7702 -3.7619 -0.5669 29 1 -0.4850 -0.8366 0.0762 30 1 -0.6382 -2.9592 -0.4776 31 1 -0.1632 -1.9049 -1.8772 32 1 -0.5531 -5.2304 -0.9779 33 1 -0.6297 -5.0746 -2.7494 34 1 1.6117 -6.2000 -2.8968 35 1 1.5644 -6.4488 -1.1350 36 1 0.6922 -8.3287 -2.3227 37 1 2.5232 -3.3822 -3.0705 38 1 3.5245 -3.4219 -4.6347 39 1 4.7135 -3.1038 -6.7580 40 1 3.4960 -2.7570 -8.8371 41 1 1.2998 -2.5401 -10.0370 42 1 -1.1352 -2.5331 -9.9054 43 1 -1.1124 -3.1885 -5.8064 44 1 2.8256 -3.9392 -0.7739 45 1 1.4020 -4.3471 0.2757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717509135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:11 Heat of formation + Delta-G solvation = 40.177375 kcal Electronic energy + Delta-G solvation = -29928.430297 eV Core-core repulsion = 25913.260174 eV Total energy + Delta-G solvation = -4015.170123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19560 -40.05235 -38.16117 -37.23709 -36.68609 -33.88784 -33.10550 -32.17725 -31.29920 -30.77140 -29.61045 -26.97414 -25.14549 -24.86945 -23.89152 -23.59008 -23.12972 -21.46862 -20.64397 -19.15579 -18.09256 -17.81866 -17.57948 -17.18422 -16.72158 -16.23662 -15.45492 -15.35214 -14.97232 -14.84675 -14.60439 -14.33766 -14.01911 -13.88166 -13.86479 -13.72003 -13.62006 -13.16961 -12.94338 -12.78571 -12.22738 -12.22048 -11.88877 -11.77119 -11.59976 -11.30160 -10.99749 -10.75845 -10.52881 -10.25741 -10.11275 -9.95511 -9.88399 -9.62130 -9.54054 -9.29898 -9.25479 -8.85351 -8.52327 -8.21159 -7.12604 -6.20648 -3.18107 -0.01436 0.74572 1.54397 2.64682 3.15128 3.29987 3.45490 3.51038 3.61447 4.02647 4.18413 4.35286 4.41979 4.48305 4.52930 4.62952 4.73752 4.78679 4.87995 4.91292 5.02186 5.12739 5.23159 5.35355 5.38675 5.42689 5.55682 5.57603 5.62113 5.74454 5.79255 5.87958 5.97451 5.98695 6.07711 6.13387 6.15087 6.24402 6.47334 6.49240 6.61679 6.71314 6.76252 7.01878 7.21454 7.64944 7.68690 7.98831 8.25381 8.36655 8.83602 9.69365 10.41496 11.20534 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.004127 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.114014 B = 6782.833949 C = 8361.018827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.025 4.025 3 Si 1.074 2.926 4 H -0.292 1.292 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.327 4.327 8 H 0.076 0.924 9 N -0.611 5.611 10 C 0.135 3.865 11 C 0.129 3.871 12 C -0.118 4.118 13 C 0.082 3.918 14 O -0.574 6.574 15 N -0.679 5.679 16 C 0.561 3.439 17 O -0.525 6.525 18 C -0.091 4.091 19 C -0.081 4.081 20 C -0.105 4.105 21 C -0.092 4.092 22 C -0.030 4.030 23 C -0.167 4.167 24 C 0.078 3.922 25 N -0.491 5.491 26 C 0.150 3.850 27 C -0.079 4.079 28 C 0.120 3.880 29 H 0.267 0.733 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.373 0.627 37 H 0.402 0.598 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.202 0.798 44 H 0.045 0.955 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 -11.480 -15.392 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.226 4.226 3 Si 0.904 3.096 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.454 4.454 8 H 0.094 0.906 9 N -0.338 5.338 10 C 0.008 3.992 11 C 0.041 3.959 12 C -0.157 4.157 13 C 0.004 3.996 14 O -0.379 6.379 15 N -0.328 5.328 16 C 0.348 3.652 17 O -0.404 6.404 18 C -0.096 4.096 19 C -0.100 4.100 20 C -0.124 4.124 21 C -0.110 4.110 22 C -0.035 4.035 23 C -0.187 4.187 24 C -0.065 4.065 25 N -0.199 5.199 26 C -0.020 4.020 27 C -0.082 4.082 28 C -0.007 4.007 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.219 0.781 37 H 0.238 0.762 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.218 0.782 44 H 0.063 0.937 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.189 -9.180 -15.408 18.973 hybrid contribution 2.244 -1.856 0.182 2.918 sum 8.433 -11.036 -15.226 20.609 Atomic orbital electron populations 1.70703 1.06550 1.30119 1.48689 1.25760 0.96610 1.00762 0.99494 0.83395 0.74024 0.75381 0.76820 1.21839 1.21630 1.22039 1.19734 0.97976 0.85433 1.42209 0.90647 1.46005 1.17893 1.01097 1.68769 1.22600 0.90142 0.92855 0.93608 1.21845 0.95691 0.94720 0.83637 1.21665 0.98495 0.90589 1.04972 1.22146 0.93316 0.85215 0.98913 1.86510 1.37761 1.17523 1.96086 1.45282 1.11563 1.70078 1.05910 1.17989 0.87017 0.76882 0.83282 1.90541 1.13329 1.50316 1.86218 1.19980 0.93700 1.02905 0.93013 1.21462 0.93068 0.96750 0.98762 1.20898 1.00629 0.98846 0.92039 1.21129 0.92483 0.98420 0.98951 1.18154 0.94034 0.98338 0.92961 1.21841 0.95496 1.03465 0.97898 1.22326 0.92120 0.95856 0.96233 1.67697 1.41589 1.11914 0.98716 1.24692 0.90862 0.88880 0.97529 1.18864 0.95615 1.01415 0.92310 1.22653 0.96798 0.88399 0.92861 0.92148 0.94008 0.92258 0.90210 0.88687 0.94208 0.93738 0.78065 0.76218 0.84897 0.84818 0.84818 0.84548 0.83170 0.78188 0.93658 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.27 13.30 55.49 0.74 -27.54 16 2 C -0.03 -0.71 5.41 -17.43 -0.09 -0.81 16 3 Si 1.07 25.36 29.98 -169.99 -5.10 20.26 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.33 -8.97 10.59 -15.06 -0.16 -9.13 16 8 H 0.08 2.02 7.94 -52.49 -0.42 1.61 16 9 N -0.61 -14.82 3.69 -184.57 -0.68 -15.50 16 10 C 0.13 3.08 5.67 -8.37 -0.05 3.03 16 11 C 0.13 2.27 0.70 -131.57 -0.09 2.18 16 12 C -0.12 -1.89 4.92 -26.73 -0.13 -2.03 16 13 C 0.08 1.07 6.81 37.16 0.25 1.32 16 14 O -0.57 -7.47 13.66 -35.23 -0.48 -7.96 16 15 N -0.68 -10.72 5.01 -48.32 -0.24 -10.96 16 16 C 0.56 9.24 7.45 -12.45 -0.09 9.15 16 17 O -0.53 -9.96 11.50 5.29 0.06 -9.90 16 18 C -0.09 -1.28 5.90 -104.66 -0.62 -1.90 16 19 C -0.08 -0.89 9.50 -39.13 -0.37 -1.26 16 20 C -0.10 -0.94 9.93 -39.98 -0.40 -1.34 16 21 C -0.09 -0.86 9.79 -39.47 -0.39 -1.24 16 22 C -0.03 -0.36 5.74 -106.84 -0.61 -0.97 16 23 C -0.17 -1.78 9.88 -39.37 -0.39 -2.17 16 24 C 0.08 0.94 11.07 -17.97 -0.20 0.74 16 25 N -0.49 -7.55 10.30 -13.22 -0.14 -7.69 16 26 C 0.15 2.41 10.49 -17.06 -0.18 2.24 16 27 C -0.08 -1.16 5.76 -106.59 -0.61 -1.77 16 28 C 0.12 2.23 7.39 -8.50 -0.06 2.16 16 29 H 0.27 8.23 6.34 -40.82 -0.26 7.98 16 30 H 0.04 0.98 7.90 -51.93 -0.41 0.57 16 31 H 0.06 1.56 8.04 -51.93 -0.42 1.14 16 32 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 33 H 0.09 1.71 6.02 -51.93 -0.31 1.40 16 34 H 0.04 0.49 7.91 -51.93 -0.41 0.08 16 35 H 0.04 0.52 7.80 -51.93 -0.41 0.12 16 36 H 0.37 2.94 9.12 45.56 0.42 3.35 16 37 H 0.40 5.51 6.79 -40.82 -0.28 5.24 16 38 H 0.13 1.17 6.47 -52.48 -0.34 0.83 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.20 3.52 4.98 -52.49 -0.26 3.26 16 44 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 45 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -35.72 371.52 -9.27 -44.99 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -4.84 Total: 10.48 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -4.19 Total: -1.79 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.32 Total: -61.68 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.42 Total: -17.85 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.10 Total: 20.26 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.72 -9.27 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717509135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.167 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds