Wall clock time and date at job start Tue Mar 31 2020 23:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99827 * 2 1 4 4 H 1.48503 * 109.47033 * 179.71836 * 3 2 1 5 5 H 1.48506 * 109.47184 * 299.71811 * 3 2 1 6 6 H 1.48500 * 109.47388 * 59.71779 * 3 2 1 7 7 C 1.38811 * 120.00286 * 179.71430 * 2 1 3 8 8 H 1.08000 * 120.00386 * 204.84852 * 7 2 1 9 9 N 1.36944 * 119.99669 * 24.84912 * 7 2 1 10 10 C 1.47068 * 136.05764 * 4.86406 * 9 7 2 11 11 C 1.53753 * 87.88708 * 152.96667 * 10 9 7 12 12 C 1.53004 * 114.08550 * 139.78201 * 11 10 9 13 13 C 1.53001 * 109.46843 * 201.39350 * 12 11 10 14 14 O 1.42898 * 109.47254 * 184.99991 * 13 12 11 15 15 N 1.46498 * 114.57691 * 272.66552 * 11 10 9 16 16 C 1.34777 * 119.99956 * 279.63357 * 15 11 10 17 17 O 1.21587 * 120.00035 * 5.50684 * 16 15 11 18 18 C 1.47571 * 119.99921 * 185.51258 * 16 15 11 19 19 C 1.38697 * 120.43263 * 5.57418 * 18 16 15 20 20 C 1.39008 * 120.75051 * 179.77112 * 19 18 16 21 21 C 1.36343 * 121.19038 * 0.48734 * 20 19 18 22 22 C 1.40355 * 119.92661 * 359.77452 * 21 20 19 23 23 C 1.40677 * 122.10155 * 180.02562 * 22 21 20 24 24 C 1.36262 * 118.67124 * 179.97438 * 23 22 21 25 25 N 1.32516 * 121.83848 * 0.02562 * 24 23 22 26 26 C 1.31314 * 122.71779 * 359.95495 * 25 24 23 27 27 C 1.40137 * 119.91896 * 0.04420 * 26 25 24 28 28 C 1.47065 * 136.05560 * 185.24194 * 9 7 2 29 29 H 0.97003 * 119.99769 * 185.20136 * 1 2 3 30 30 H 1.08997 * 113.47058 * 267.70302 * 10 9 7 31 31 H 1.09000 * 113.46355 * 38.13823 * 10 9 7 32 32 H 1.08998 * 109.47214 * 321.38896 * 12 11 10 33 33 H 1.08994 * 109.47034 * 81.39547 * 12 11 10 34 34 H 1.08999 * 109.47320 * 305.00305 * 13 12 11 35 35 H 1.09002 * 109.47118 * 64.99743 * 13 12 11 36 36 H 0.96700 * 114.00366 * 180.02562 * 14 13 12 37 37 H 0.96998 * 119.99996 * 99.62250 * 15 11 10 38 38 H 1.08003 * 119.62821 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.40662 * 180.23642 * 20 19 18 40 40 H 1.07995 * 120.03674 * 179.78758 * 21 20 19 41 41 H 1.08002 * 120.66511 * 0.02562 * 23 22 21 42 42 H 1.08002 * 119.08524 * 180.02562 * 24 23 22 43 43 H 1.07994 * 120.04166 * 180.02562 * 26 25 24 44 44 H 1.08997 * 113.46869 * 321.86022 * 28 9 7 45 45 H 1.08999 * 113.47000 * 92.24486 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0069 5 1 1.8965 2.3935 -1.2160 6 1 1.8862 2.3995 1.2090 7 6 2.0103 -1.2021 0.0060 8 1 3.0153 -1.2434 0.3992 9 7 1.4207 -2.3356 -0.4868 10 6 0.1563 -2.6634 -1.1627 11 6 0.8789 -3.8546 -1.8131 12 6 0.0369 -5.1299 -1.8888 13 6 0.9592 -6.3419 -2.0353 14 8 0.1720 -7.5197 -2.2228 15 7 1.5660 -3.5391 -3.0679 16 6 0.8681 -3.4665 -4.2186 17 8 -0.3438 -3.5634 -4.2018 18 6 1.5749 -3.2696 -5.4990 19 6 2.9611 -3.2733 -5.5441 20 6 3.6336 -3.0932 -6.7473 21 6 2.9545 -2.8984 -7.9134 22 6 1.5511 -2.8821 -7.9122 23 6 0.8047 -2.6854 -9.0883 24 6 -0.5555 -2.6830 -9.0066 25 7 -1.1870 -2.8596 -7.8550 26 6 -0.5540 -3.0487 -6.7202 27 6 0.8470 -3.0685 -6.6961 28 6 1.7702 -3.7619 -0.5669 29 1 -0.4850 -0.8366 0.0762 30 1 -0.6382 -2.9592 -0.4776 31 1 -0.1632 -1.9049 -1.8772 32 1 -0.5531 -5.2304 -0.9779 33 1 -0.6297 -5.0746 -2.7494 34 1 1.6117 -6.2000 -2.8968 35 1 1.5644 -6.4488 -1.1350 36 1 0.6922 -8.3287 -2.3227 37 1 2.5232 -3.3822 -3.0705 38 1 3.5245 -3.4219 -4.6347 39 1 4.7135 -3.1038 -6.7580 40 1 3.4960 -2.7570 -8.8371 41 1 1.2998 -2.5401 -10.0370 42 1 -1.1352 -2.5331 -9.9054 43 1 -1.1124 -3.1885 -5.8064 44 1 2.8256 -3.9392 -0.7739 45 1 1.4020 -4.3471 0.2757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717509135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:10 Heat of formation + Delta-G solvation = 12.303187 kcal Electronic energy + Delta-G solvation = -29929.639013 eV Core-core repulsion = 25913.260174 eV Total energy + Delta-G solvation = -4016.378838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26050 -41.37763 -39.54221 -38.19296 -37.77239 -35.49937 -34.29046 -33.68299 -32.21059 -32.18953 -30.56082 -28.82328 -26.80841 -25.98495 -25.20522 -24.48526 -24.30199 -23.03174 -21.91314 -20.54850 -19.47999 -19.12611 -18.75418 -18.34763 -17.65446 -17.27610 -16.81667 -16.49156 -16.27650 -16.18556 -15.80485 -15.71999 -15.55615 -15.43778 -15.03169 -14.94930 -14.73540 -14.63117 -14.20698 -13.73094 -13.40965 -13.19665 -13.07528 -12.97451 -12.79531 -12.72399 -12.59259 -12.50749 -12.13519 -11.87152 -11.60861 -11.40892 -11.19321 -11.01696 -10.78480 -10.65587 -10.37145 -10.19073 -10.15687 -9.16838 -9.09946 -8.42795 -5.34237 -0.93061 -0.13200 0.56228 1.54182 1.64383 1.69200 1.77461 1.92197 2.20732 2.57533 2.98862 3.06287 3.22037 3.26324 3.43277 3.52148 3.53068 3.70382 3.74106 3.82906 3.94169 4.06143 4.17270 4.23190 4.32441 4.34562 4.38838 4.52737 4.59231 4.59488 4.65670 4.71000 4.78462 4.81282 4.81436 4.88702 5.02091 5.07782 5.15689 5.20158 5.29319 5.32399 5.56342 5.66414 5.78300 6.10274 6.46049 6.62714 6.91668 6.98749 7.15101 7.58056 8.39785 9.01007 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.004127 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.114014 B = 6782.833949 C = 8361.018827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.090 4.090 3 Si 1.124 2.876 4 H -0.257 1.257 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.320 4.320 8 H 0.086 0.914 9 N -0.637 5.637 10 C 0.128 3.872 11 C 0.160 3.840 12 C -0.114 4.114 13 C 0.092 3.908 14 O -0.593 6.593 15 N -0.675 5.675 16 C 0.556 3.444 17 O -0.563 6.563 18 C -0.133 4.133 19 C -0.059 4.059 20 C -0.106 4.106 21 C -0.071 4.071 22 C -0.051 4.051 23 C -0.140 4.140 24 C 0.050 3.950 25 N -0.516 5.516 26 C 0.109 3.891 27 C -0.093 4.093 28 C 0.128 3.872 29 H 0.250 0.750 30 H 0.026 0.974 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.398 0.602 37 H 0.414 0.586 38 H 0.155 0.845 39 H 0.178 0.822 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.080 0.920 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.681 -12.539 -17.777 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.284 4.284 3 Si 0.948 3.052 4 H -0.181 1.181 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.447 4.447 8 H 0.104 0.896 9 N -0.364 5.364 10 C 0.001 3.999 11 C 0.071 3.929 12 C -0.154 4.154 13 C 0.014 3.986 14 O -0.402 6.402 15 N -0.325 5.325 16 C 0.345 3.655 17 O -0.444 6.444 18 C -0.138 4.138 19 C -0.078 4.078 20 C -0.125 4.125 21 C -0.088 4.088 22 C -0.057 4.057 23 C -0.159 4.159 24 C -0.094 4.094 25 N -0.225 5.225 26 C -0.060 4.060 27 C -0.096 4.096 28 C 0.003 3.997 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.029 0.971 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.252 0.748 38 H 0.173 0.827 39 H 0.196 0.804 40 H 0.196 0.804 41 H 0.201 0.799 42 H 0.196 0.804 43 H 0.186 0.814 44 H 0.098 0.902 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.462 -10.309 -17.790 23.540 hybrid contribution 0.660 -1.604 0.808 1.913 sum 12.122 -11.913 -16.982 24.026 Atomic orbital electron populations 1.70834 1.08046 1.29086 1.52727 1.27207 0.96546 1.04676 0.99933 0.82757 0.74729 0.71504 0.76183 1.18141 1.22449 1.22090 1.20122 0.98180 0.86543 1.39830 0.89632 1.46264 1.18333 1.03143 1.68637 1.22593 0.90195 0.94098 0.93020 1.21378 0.94420 0.92776 0.84304 1.21554 0.98591 0.91735 1.03488 1.21983 0.92234 0.83893 1.00482 1.86448 1.39000 1.18589 1.96178 1.45182 1.12000 1.70337 1.05030 1.18541 0.86782 0.75822 0.84326 1.90550 1.15203 1.51719 1.86879 1.19789 0.95131 1.07458 0.91401 1.21871 0.91541 0.93485 1.00892 1.21394 1.02707 0.97659 0.90748 1.21669 0.90950 0.95236 1.00993 1.18567 0.95793 0.99041 0.92271 1.22347 0.94786 0.99644 0.99157 1.22847 0.93682 0.97010 0.95855 1.67558 1.43090 1.12166 0.99647 1.24230 0.92163 0.92582 0.97065 1.18961 0.94935 1.01788 0.93935 1.22790 0.98832 0.84941 0.93175 0.94052 0.95667 0.97148 0.90934 0.91246 0.93029 0.91459 0.75250 0.74795 0.82721 0.80447 0.80406 0.79899 0.80404 0.81429 0.90217 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.44 13.30 21.65 0.29 -62.15 16 2 C -0.09 -5.25 5.41 84.86 0.46 -4.79 16 3 Si 1.12 51.66 29.98 68.60 2.06 53.72 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.32 -17.59 10.59 84.03 0.89 -16.70 16 8 H 0.09 4.45 7.94 -2.91 -0.02 4.43 16 9 N -0.64 -31.45 3.69 -737.85 -2.72 -34.17 16 10 C 0.13 6.30 5.67 83.27 0.47 6.78 16 11 C 0.16 5.76 0.70 4.17 0.00 5.77 16 12 C -0.11 -3.79 4.92 30.60 0.15 -3.64 16 13 C 0.09 2.25 6.81 71.98 0.49 2.74 16 14 O -0.59 -14.66 13.66 -148.98 -2.03 -16.69 16 15 N -0.67 -21.54 5.01 -425.04 -2.13 -23.67 16 16 C 0.56 19.44 7.45 86.71 0.65 20.09 16 17 O -0.56 -23.87 11.50 -3.99 -0.05 -23.92 16 18 C -0.13 -3.78 5.90 -19.89 -0.12 -3.90 16 19 C -0.06 -1.11 9.50 22.56 0.21 -0.90 16 20 C -0.11 -1.34 9.93 22.01 0.22 -1.12 16 21 C -0.07 -0.95 9.79 22.34 0.22 -0.73 16 22 C -0.05 -1.12 5.74 -21.30 -0.12 -1.24 16 23 C -0.14 -2.55 9.88 22.40 0.22 -2.33 16 24 C 0.05 1.16 11.07 84.13 0.93 2.09 16 25 N -0.52 -16.98 10.30 -195.72 -2.02 -19.00 16 26 C 0.11 3.86 10.49 85.23 0.89 4.76 16 27 C -0.09 -2.81 5.76 -21.14 -0.12 -2.93 16 28 C 0.13 4.59 7.39 83.18 0.61 5.21 16 29 H 0.25 16.54 6.34 -92.71 -0.59 15.95 16 30 H 0.03 1.31 7.90 -2.39 -0.02 1.29 16 31 H 0.01 0.59 8.04 -2.39 -0.02 0.57 16 32 H 0.07 2.46 7.99 -2.39 -0.02 2.45 16 33 H 0.07 2.70 6.02 -2.39 -0.01 2.69 16 34 H 0.05 1.15 7.91 -2.39 -0.02 1.14 16 35 H 0.07 1.37 7.80 -2.39 -0.02 1.35 16 36 H 0.40 5.34 9.12 -74.06 -0.68 4.67 16 37 H 0.41 10.72 6.79 -92.71 -0.63 10.09 16 38 H 0.16 2.12 6.47 -2.91 -0.02 2.10 16 39 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 40 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 41 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.18 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.17 6.91 4.98 -2.93 -0.01 6.90 16 44 H 0.08 2.37 8.13 -2.39 -0.02 2.35 16 45 H 0.06 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -87.54 371.52 -0.61 -88.15 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.07 Total: 28.59 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.06 Total: 9.14 kcal Atomic # 7 Polarization: -132.41 SS G_CDS: -6.58 Total: -138.99 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -2.08 Total: -40.61 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.06 Total: 53.72 kcal Total: -87.54 -0.61 -88.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717509135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.455 kcal (2) G-P(sol) polarization free energy of solvation -87.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds