Wall clock time and date at job start Wed Apr 1 2020 00:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48495 * 109.47264 * 239.99766 * 3 2 1 5 5 H 1.48501 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47123 * 119.99603 * 3 2 1 7 7 C 1.38811 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00413 * 157.94987 * 7 2 1 9 9 N 1.36944 * 119.99470 * 337.95616 * 7 2 1 10 10 C 1.46498 * 119.99945 * 324.91611 * 9 7 2 11 11 C 1.53000 * 109.47029 * 270.00221 * 10 9 7 12 12 N 1.46497 * 109.47399 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00367 * 179.97438 * 12 11 10 14 14 O 1.21639 * 119.99709 * 0.02562 * 13 12 11 15 15 C 1.47138 * 119.99846 * 180.02562 * 13 12 11 16 16 C 1.37941 * 120.55684 * 359.71715 * 15 13 12 17 17 N 1.33957 * 122.20529 * 179.72565 * 16 15 13 18 18 H 0.96996 * 118.59946 * 180.25962 * 17 16 15 19 19 C 1.37796 * 122.80335 * 0.59468 * 17 16 15 20 20 C 1.39277 * 120.52688 * 179.70669 * 19 17 16 21 21 C 1.37737 * 119.97402 * 179.97438 * 20 19 17 22 22 C 1.38784 * 120.72399 * 0.03035 * 21 20 19 23 23 C 1.37715 * 120.29712 * 359.92674 * 22 21 20 24 24 C 1.39497 * 119.60192 * 0.09122 * 23 22 21 25 25 C 1.47146 * 120.54819 * 180.02562 * 15 13 12 26 26 O 1.21857 * 121.41385 * 359.97438 * 25 15 13 27 27 C 1.46496 * 119.99916 * 144.91700 * 9 7 2 28 28 C 1.53001 * 117.49996 * 3.23590 * 27 9 7 29 29 C 1.52998 * 117.49986 * 294.57705 * 27 9 7 30 30 H 0.97004 * 119.99808 * 355.77581 * 1 2 3 31 31 H 1.08993 * 109.47612 * 30.00036 * 10 9 7 32 32 H 1.09000 * 109.46957 * 150.00391 * 10 9 7 33 33 H 1.09000 * 109.47130 * 300.00404 * 11 10 9 34 34 H 1.09002 * 109.47569 * 60.00009 * 11 10 9 35 35 H 0.97006 * 119.99799 * 0.02562 * 12 11 10 36 36 H 1.08004 * 118.89514 * 0.02953 * 16 15 13 37 37 H 1.08002 * 120.00807 * 0.02562 * 20 19 17 38 38 H 1.07998 * 119.63285 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.84978 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.19970 * 180.02562 * 23 22 21 41 41 H 1.09003 * 115.55179 * 148.90028 * 27 9 7 42 42 H 1.09007 * 117.49931 * 359.97438 * 28 27 9 43 43 H 1.08995 * 117.50264 * 145.01648 * 28 27 9 44 44 H 1.09000 * 117.49768 * 214.97577 * 29 27 9 45 45 H 1.08996 * 117.50034 * 359.97286 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4006 -2.3445 0.4462 10 6 0.4453 -2.2802 1.5550 11 6 1.1882 -2.4655 2.8796 12 7 0.2329 -2.4018 3.9884 13 6 0.6635 -2.5409 5.2579 14 8 1.8456 -2.7189 5.4830 15 6 -0.2961 -2.4775 6.3714 16 6 -1.6383 -2.2703 6.1296 17 7 -2.5411 -2.2122 7.1175 18 1 -3.4723 -2.0680 6.8876 19 6 -2.2024 -2.3419 8.4469 20 6 -3.1797 -2.2677 9.4364 21 6 -2.8285 -2.3994 10.7617 22 6 -1.5058 -2.6057 11.1276 23 6 -0.5230 -2.6833 10.1660 24 6 -0.8641 -2.5513 8.8198 25 6 0.1609 -2.6273 7.7621 26 8 1.3363 -2.8069 8.0285 27 6 1.7038 -3.6309 -0.1858 28 6 2.7655 -3.6440 -1.2874 29 6 1.2874 -3.8159 -1.6464 30 1 -0.4850 0.8378 0.0619 31 1 -0.0523 -1.3105 1.5501 32 1 -0.2971 -3.0701 1.4411 33 1 1.6859 -3.4352 2.8845 34 1 1.9307 -1.6756 2.9935 35 1 -0.7098 -2.2602 3.8088 36 1 -1.9731 -2.1559 5.1091 37 1 -4.2127 -2.1078 9.1645 38 1 -3.5909 -2.3414 11.5245 39 1 -1.2461 -2.7067 12.1711 40 1 0.5058 -2.8443 10.4525 41 1 1.6463 -4.5011 0.4680 42 1 3.2382 -2.6953 -1.5422 43 1 3.4062 -4.5229 -1.3585 44 1 0.9564 -4.8079 -1.9536 45 1 0.7876 -2.9807 -2.1369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731877885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:43 Heat of formation + Delta-G solvation = 27.729403 kcal Electronic energy + Delta-G solvation = -28477.144757 eV Core-core repulsion = 24461.434850 eV Total energy + Delta-G solvation = -4015.709907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30273 -39.11550 -37.90689 -37.47955 -37.03003 -34.61009 -33.25808 -32.28346 -31.31233 -30.63576 -30.15556 -27.53780 -24.81192 -24.36409 -23.97481 -22.60150 -21.84762 -21.30158 -20.68899 -19.77850 -18.81951 -18.56119 -18.00989 -16.54944 -16.05657 -15.97329 -15.54089 -15.41353 -15.19301 -14.96808 -14.68368 -14.53332 -14.41616 -14.23353 -13.84274 -13.59607 -13.40452 -12.92627 -12.73108 -12.60440 -12.33663 -12.32155 -11.91060 -11.69599 -11.53347 -11.02895 -10.75044 -10.71315 -10.31562 -10.11662 -9.89804 -9.83527 -9.64242 -9.62840 -9.41739 -9.33921 -9.17211 -8.54239 -8.44227 -8.01045 -6.64847 -5.86092 -3.45869 0.42518 0.49153 1.35644 2.41385 2.60681 3.34659 3.39851 3.40279 3.45539 3.48833 3.93527 3.93741 4.21110 4.38706 4.42315 4.59292 4.63945 4.74904 4.87455 4.92093 5.17153 5.26969 5.30835 5.37932 5.43830 5.57102 5.62049 5.90578 5.95213 6.04993 6.12582 6.15172 6.19778 6.23071 6.33518 6.50181 6.53223 6.57331 6.61302 6.62378 6.92902 7.00337 7.10069 7.20949 7.52487 7.75830 7.85387 8.01263 8.40701 8.76480 9.08188 9.70854 10.25516 11.10146 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.002411 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.274448 B =11609.056321 C =12022.721580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.011 3.989 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.547 5.547 10 C 0.137 3.863 11 C 0.102 3.898 12 N -0.725 5.725 13 C 0.568 3.432 14 O -0.521 6.521 15 C -0.317 4.317 16 C 0.205 3.795 17 N -0.598 5.598 18 H 0.422 0.578 19 C 0.182 3.818 20 C -0.170 4.170 21 C -0.062 4.062 22 C -0.155 4.155 23 C -0.032 4.032 24 C -0.183 4.183 25 C 0.430 3.570 26 O -0.447 6.447 27 C 0.120 3.880 28 C -0.195 4.195 29 C -0.220 4.220 30 H 0.255 0.745 31 H 0.105 0.895 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.388 0.612 36 H 0.170 0.830 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 -5.082 18.248 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.189 4.189 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.264 5.264 10 C 0.010 3.990 11 C -0.023 4.023 12 N -0.378 5.378 13 C 0.354 3.646 14 O -0.397 6.397 15 C -0.329 4.329 16 C 0.072 3.928 17 N -0.206 5.206 18 H 0.258 0.742 19 C 0.081 3.919 20 C -0.190 4.190 21 C -0.081 4.081 22 C -0.174 4.174 23 C -0.050 4.050 24 C -0.186 4.186 25 C 0.310 3.690 26 O -0.323 6.323 27 C 0.011 3.989 28 C -0.234 4.234 29 C -0.261 4.261 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.222 0.778 36 H 0.187 0.813 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.159 0.841 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.396 -5.155 18.501 22.859 hybrid contribution -0.665 1.064 -0.380 1.311 sum -13.061 -4.091 18.121 22.709 Atomic orbital electron populations 1.70030 1.05481 1.26135 1.51172 1.25098 0.95037 0.98775 0.99967 0.86462 0.79329 0.83118 0.78538 1.20618 1.21583 1.20647 1.19069 0.94527 0.85453 1.39504 0.91462 1.43215 1.49190 1.01685 1.32311 1.21100 0.91000 1.03423 0.83501 1.22288 0.92676 1.01157 0.86210 1.45979 1.11446 1.74348 1.05988 1.17387 0.87683 0.77665 0.81854 1.90845 1.16603 1.48241 1.83999 1.22109 0.92556 1.21470 0.96777 1.22079 0.89486 0.88194 0.93037 1.40810 1.11377 1.64708 1.03668 0.74171 1.17909 0.93630 0.97052 0.83320 1.20708 0.98296 1.07715 0.92304 1.21105 0.96598 0.95071 0.95313 1.21163 0.92746 1.03594 0.99932 1.21189 1.00620 0.92681 0.90524 1.20351 0.92536 1.09599 0.96158 1.19379 0.87972 0.75144 0.86492 1.90753 1.18317 1.38568 1.84709 1.21233 1.00598 0.89942 0.87164 1.23043 0.91913 1.01983 1.06419 1.23359 0.97463 1.00637 1.04656 0.93561 0.87732 0.95115 0.93126 0.91552 0.77835 0.81272 0.84826 0.85006 0.85052 0.84130 0.89428 0.88408 0.90662 0.91200 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 11.33 55.49 0.63 -23.26 16 2 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 3 Si 0.90 21.27 29.61 -169.99 -5.03 16.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -6.74 8.63 -15.06 -0.13 -6.87 16 8 H 0.07 1.79 6.55 -52.49 -0.34 1.45 16 9 N -0.55 -13.10 2.78 -165.67 -0.46 -13.56 16 10 C 0.14 2.95 5.45 -4.04 -0.02 2.93 16 11 C 0.10 2.08 6.00 -4.04 -0.02 2.05 16 12 N -0.73 -12.11 5.51 -61.47 -0.34 -12.44 16 13 C 0.57 10.61 7.76 -12.65 -0.10 10.51 16 14 O -0.52 -12.48 15.55 -14.88 -0.23 -12.71 16 15 C -0.32 -4.63 6.04 -102.78 -0.62 -5.26 16 16 C 0.20 1.79 10.65 -16.73 -0.18 1.61 16 17 N -0.60 -3.74 5.21 -10.42 -0.05 -3.80 16 18 H 0.42 0.88 8.73 -40.82 -0.36 0.53 16 19 C 0.18 1.54 6.66 -83.94 -0.56 0.98 16 20 C -0.17 -0.99 9.87 -39.38 -0.39 -1.38 16 21 C -0.06 -0.35 10.01 -39.56 -0.40 -0.75 16 22 C -0.16 -1.11 10.03 -39.57 -0.40 -1.50 16 23 C -0.03 -0.32 9.65 -39.30 -0.38 -0.70 16 24 C -0.18 -2.17 5.89 -104.81 -0.62 -2.79 16 25 C 0.43 6.97 7.15 -32.20 -0.23 6.74 16 26 O -0.45 -9.15 15.85 -15.08 -0.24 -9.39 16 27 C 0.12 2.53 6.56 -67.93 -0.45 2.08 16 28 C -0.20 -3.86 9.80 -26.69 -0.26 -4.12 16 29 C -0.22 -4.41 10.36 -26.70 -0.28 -4.69 16 30 H 0.25 6.65 8.32 -40.82 -0.34 6.31 16 31 H 0.11 2.49 5.35 -51.93 -0.28 2.22 16 32 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.39 4.94 6.48 -40.82 -0.26 4.67 16 36 H 0.17 0.91 6.31 -52.48 -0.33 0.58 16 37 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 39 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.14 1.46 7.79 -52.49 -0.41 1.05 16 41 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.10 2.10 6.37 -51.92 -0.33 1.77 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -37.15 379.61 -10.79 -47.94 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.67 Total: 6.22 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -5.11 Total: -0.96 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.22 Total: -53.06 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.47 Total: -22.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.15 -10.79 -47.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731877885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.673 kcal (2) G-P(sol) polarization free energy of solvation -37.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds