Wall clock time and date at job start Wed Apr 1 2020 00:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48495 * 109.47264 * 239.99766 * 3 2 1 5 5 H 1.48501 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47123 * 119.99603 * 3 2 1 7 7 C 1.38811 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00413 * 157.94987 * 7 2 1 9 9 N 1.36944 * 119.99470 * 337.95616 * 7 2 1 10 10 C 1.46498 * 119.99945 * 324.91611 * 9 7 2 11 11 C 1.53000 * 109.47029 * 270.00221 * 10 9 7 12 12 N 1.46497 * 109.47399 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00367 * 179.97438 * 12 11 10 14 14 O 1.21639 * 119.99709 * 0.02562 * 13 12 11 15 15 C 1.47138 * 119.99846 * 180.02562 * 13 12 11 16 16 C 1.37941 * 120.55684 * 359.71715 * 15 13 12 17 17 N 1.33957 * 122.20529 * 179.72565 * 16 15 13 18 18 H 0.96996 * 118.59946 * 180.25962 * 17 16 15 19 19 C 1.37796 * 122.80335 * 0.59468 * 17 16 15 20 20 C 1.39277 * 120.52688 * 179.70669 * 19 17 16 21 21 C 1.37737 * 119.97402 * 179.97438 * 20 19 17 22 22 C 1.38784 * 120.72399 * 0.03035 * 21 20 19 23 23 C 1.37715 * 120.29712 * 359.92674 * 22 21 20 24 24 C 1.39497 * 119.60192 * 0.09122 * 23 22 21 25 25 C 1.47146 * 120.54819 * 180.02562 * 15 13 12 26 26 O 1.21857 * 121.41385 * 359.97438 * 25 15 13 27 27 C 1.46496 * 119.99916 * 144.91700 * 9 7 2 28 28 C 1.53001 * 117.49996 * 3.23590 * 27 9 7 29 29 C 1.52998 * 117.49986 * 294.57705 * 27 9 7 30 30 H 0.97004 * 119.99808 * 355.77581 * 1 2 3 31 31 H 1.08993 * 109.47612 * 30.00036 * 10 9 7 32 32 H 1.09000 * 109.46957 * 150.00391 * 10 9 7 33 33 H 1.09000 * 109.47130 * 300.00404 * 11 10 9 34 34 H 1.09002 * 109.47569 * 60.00009 * 11 10 9 35 35 H 0.97006 * 119.99799 * 0.02562 * 12 11 10 36 36 H 1.08004 * 118.89514 * 0.02953 * 16 15 13 37 37 H 1.08002 * 120.00807 * 0.02562 * 20 19 17 38 38 H 1.07998 * 119.63285 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.84978 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.19970 * 180.02562 * 23 22 21 41 41 H 1.09003 * 115.55179 * 148.90028 * 27 9 7 42 42 H 1.09007 * 117.49931 * 359.97438 * 28 27 9 43 43 H 1.08995 * 117.50264 * 145.01648 * 28 27 9 44 44 H 1.09000 * 117.49768 * 214.97577 * 29 27 9 45 45 H 1.08996 * 117.50034 * 359.97286 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4006 -2.3445 0.4462 10 6 0.4453 -2.2802 1.5550 11 6 1.1882 -2.4655 2.8796 12 7 0.2329 -2.4018 3.9884 13 6 0.6635 -2.5409 5.2579 14 8 1.8456 -2.7189 5.4830 15 6 -0.2961 -2.4775 6.3714 16 6 -1.6383 -2.2703 6.1296 17 7 -2.5411 -2.2122 7.1175 18 1 -3.4723 -2.0680 6.8876 19 6 -2.2024 -2.3419 8.4469 20 6 -3.1797 -2.2677 9.4364 21 6 -2.8285 -2.3994 10.7617 22 6 -1.5058 -2.6057 11.1276 23 6 -0.5230 -2.6833 10.1660 24 6 -0.8641 -2.5513 8.8198 25 6 0.1609 -2.6273 7.7621 26 8 1.3363 -2.8069 8.0285 27 6 1.7038 -3.6309 -0.1858 28 6 2.7655 -3.6440 -1.2874 29 6 1.2874 -3.8159 -1.6464 30 1 -0.4850 0.8378 0.0619 31 1 -0.0523 -1.3105 1.5501 32 1 -0.2971 -3.0701 1.4411 33 1 1.6859 -3.4352 2.8845 34 1 1.9307 -1.6756 2.9935 35 1 -0.7098 -2.2602 3.8088 36 1 -1.9731 -2.1559 5.1091 37 1 -4.2127 -2.1078 9.1645 38 1 -3.5909 -2.3414 11.5245 39 1 -1.2461 -2.7067 12.1711 40 1 0.5058 -2.8443 10.4525 41 1 1.6463 -4.5011 0.4680 42 1 3.2382 -2.6953 -1.5422 43 1 3.4062 -4.5229 -1.3585 44 1 0.9564 -4.8079 -1.9536 45 1 0.7876 -2.9807 -2.1369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731877885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:42 Heat of formation + Delta-G solvation = 2.423491 kcal Electronic energy + Delta-G solvation = -28478.242104 eV Core-core repulsion = 24461.434850 eV Total energy + Delta-G solvation = -4016.807254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12781 -40.43001 -39.06611 -38.76061 -38.20050 -36.23496 -34.99256 -33.35797 -32.56040 -31.81911 -31.00835 -29.19558 -26.44829 -25.23470 -25.07619 -23.47323 -23.32349 -22.88596 -21.99443 -21.54652 -19.78394 -19.41440 -18.85188 -18.20502 -17.42630 -17.22718 -16.90309 -16.72175 -16.56284 -16.11764 -15.96694 -15.73227 -15.51339 -15.33832 -14.96360 -14.79886 -14.48000 -14.42356 -14.29939 -14.02576 -13.72840 -13.26554 -13.08272 -12.92001 -12.90203 -12.64521 -12.49336 -12.28728 -12.12402 -11.90365 -11.66375 -11.37562 -11.23622 -10.92188 -10.48952 -10.47503 -10.44900 -10.08780 -9.99022 -8.88003 -8.56687 -7.84026 -5.46892 -0.36273 -0.25522 0.64669 1.42975 1.46367 1.53289 1.58761 1.74771 2.15031 2.39473 2.49788 2.93224 3.09119 3.14107 3.41165 3.52344 3.56199 3.73450 3.80079 3.99992 4.23515 4.30361 4.30670 4.32832 4.39506 4.44556 4.51654 4.56462 4.64655 4.76620 4.85658 4.88278 4.94686 5.00071 5.05193 5.25463 5.33596 5.37533 5.47721 5.49734 5.50335 5.55318 5.68078 5.77461 5.87117 6.13172 6.43343 6.70744 6.82953 7.12762 7.40937 7.81265 8.30201 9.07892 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.002411 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.274448 B =11609.056321 C =12022.721580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.027 4.027 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.291 1.291 7 C -0.264 4.264 8 H 0.055 0.945 9 N -0.565 5.565 10 C 0.146 3.854 11 C 0.123 3.877 12 N -0.709 5.709 13 C 0.566 3.434 14 O -0.592 6.592 15 C -0.383 4.383 16 C 0.268 3.732 17 N -0.563 5.563 18 H 0.450 0.550 19 C 0.168 3.832 20 C -0.146 4.146 21 C -0.054 4.054 22 C -0.143 4.143 23 C -0.064 4.064 24 C -0.208 4.208 25 C 0.410 3.590 26 O -0.527 6.527 27 C 0.098 3.902 28 C -0.189 4.189 29 C -0.206 4.206 30 H 0.255 0.745 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.024 0.976 35 H 0.410 0.590 36 H 0.214 0.786 37 H 0.182 0.818 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.132 -5.391 19.329 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.225 4.225 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.218 1.218 7 C -0.394 4.394 8 H 0.072 0.928 9 N -0.283 5.283 10 C 0.020 3.980 11 C -0.004 4.004 12 N -0.363 5.363 13 C 0.356 3.644 14 O -0.472 6.472 15 C -0.395 4.395 16 C 0.129 3.871 17 N -0.171 5.171 18 H 0.293 0.707 19 C 0.067 3.933 20 C -0.166 4.166 21 C -0.073 4.073 22 C -0.162 4.162 23 C -0.082 4.082 24 C -0.212 4.212 25 C 0.297 3.703 26 O -0.410 6.410 27 C -0.010 4.010 28 C -0.227 4.227 29 C -0.247 4.247 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.248 0.752 36 H 0.231 0.769 37 H 0.200 0.800 38 H 0.192 0.808 39 H 0.172 0.828 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.092 0.908 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.814 -5.457 19.594 27.038 hybrid contribution 0.738 1.132 -0.562 1.463 sum -17.076 -4.325 19.032 25.933 Atomic orbital electron populations 1.70090 1.05972 1.26457 1.52095 1.25580 0.95763 1.00669 1.00476 0.85714 0.78327 0.80776 0.77878 1.20365 1.20992 1.21773 1.19144 0.94279 0.86860 1.39156 0.92755 1.43409 1.49503 1.02103 1.33276 1.20985 0.90877 1.03078 0.83081 1.21797 0.92466 0.98939 0.87181 1.45655 1.11951 1.74019 1.04681 1.18005 0.87587 0.75941 0.82842 1.90793 1.19803 1.51670 1.84981 1.21550 0.94356 1.29017 0.94598 1.22406 0.87407 0.82112 0.95159 1.40940 1.12408 1.60982 1.02745 0.70669 1.18080 0.92700 0.97792 0.84698 1.21268 0.99570 1.04331 0.91409 1.21668 0.96431 0.92680 0.96486 1.21510 0.92974 1.01386 1.00285 1.21201 1.00805 0.95136 0.91098 1.20250 0.93284 1.12031 0.95609 1.20137 0.88045 0.73664 0.88434 1.90692 1.21180 1.43289 1.85840 1.21523 1.01971 0.89446 0.88058 1.23058 0.92194 1.02213 1.05256 1.23258 0.97249 1.01189 1.03003 0.93609 0.89557 0.92858 0.94157 0.95764 0.75228 0.76930 0.80049 0.80774 0.82758 0.86489 0.87256 0.90799 0.87397 0.87757 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.99 11.33 21.65 0.25 -48.75 16 2 C -0.03 -1.44 4.96 84.86 0.42 -1.02 16 3 Si 0.94 44.65 29.61 68.60 2.03 46.68 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.26 -14.27 8.63 84.03 0.72 -13.55 16 8 H 0.05 3.02 6.55 -2.91 -0.02 3.00 16 9 N -0.57 -27.44 2.78 -678.06 -1.88 -29.33 16 10 C 0.15 6.36 5.45 86.38 0.47 6.83 16 11 C 0.12 5.24 6.00 86.38 0.52 5.76 16 12 N -0.71 -24.23 5.51 -466.65 -2.57 -26.80 16 13 C 0.57 22.65 7.76 86.58 0.67 23.32 16 14 O -0.59 -31.40 15.55 15.09 0.23 -31.17 16 15 C -0.38 -11.65 6.04 -18.67 -0.11 -11.76 16 16 C 0.27 3.89 10.65 84.30 0.90 4.79 16 17 N -0.56 -4.36 5.21 -186.89 -0.97 -5.33 16 18 H 0.45 -1.31 8.73 -92.71 -0.81 -2.12 16 19 C 0.17 2.25 6.66 39.01 0.26 2.51 16 20 C -0.15 -0.80 9.87 22.40 0.22 -0.58 16 21 C -0.05 -0.31 10.01 22.28 0.22 -0.09 16 22 C -0.14 -1.68 10.03 22.28 0.22 -1.46 16 23 C -0.06 -1.37 9.65 22.45 0.22 -1.15 16 24 C -0.21 -5.07 5.89 -19.98 -0.12 -5.19 16 25 C 0.41 14.65 7.15 27.05 0.19 14.85 16 26 O -0.53 -24.82 15.85 14.39 0.23 -24.59 16 27 C 0.10 4.08 6.56 44.99 0.30 4.37 16 28 C -0.19 -7.32 9.80 30.62 0.30 -7.02 16 29 C -0.21 -7.99 10.36 30.62 0.32 -7.68 16 30 H 0.25 13.30 8.32 -92.71 -0.77 12.53 16 31 H 0.09 4.14 5.35 -2.39 -0.01 4.13 16 32 H 0.05 2.05 8.07 -2.39 -0.02 2.03 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.41 9.82 6.48 -92.70 -0.60 9.22 16 36 H 0.21 1.21 6.31 -2.91 -0.02 1.19 16 37 H 0.18 -0.63 8.06 -2.91 -0.02 -0.66 16 38 H 0.17 -0.32 8.06 -2.91 -0.02 -0.34 16 39 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.12 2.92 7.79 -2.91 -0.02 2.90 16 41 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 42 H 0.07 3.23 6.37 -2.38 -0.02 3.21 16 43 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.06 2.73 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -94.51 379.61 2.68 -91.83 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.35 Total: 14.51 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.72 Total: 12.94 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -5.18 Total: -110.20 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: 0.46 Total: -55.76 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -94.51 2.68 -91.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731877885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.253 kcal (2) G-P(sol) polarization free energy of solvation -94.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds