Wall clock time and date at job start Tue Mar 31 2020 23:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47239 * 299.99990 * 3 2 1 6 6 H 1.48501 * 109.46793 * 59.99571 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47565 * 65.00686 * 11 10 9 13 13 N 1.46496 * 109.47535 * 305.00097 * 11 10 9 14 14 C 1.34781 * 120.00141 * 155.00410 * 13 11 10 15 15 O 1.21589 * 119.99726 * 359.97438 * 14 13 11 16 16 C 1.47553 * 120.00137 * 180.02562 * 14 13 11 17 17 C 1.38915 * 120.29340 * 359.97438 * 16 14 13 18 18 C 1.40563 * 118.06500 * 180.02562 * 17 16 14 19 19 C 1.40540 * 121.12833 * 180.02562 * 18 17 16 20 20 C 1.36149 * 119.63546 * 180.02562 * 19 18 17 21 21 C 1.39328 * 120.83105 * 359.95838 * 20 19 18 22 22 C 1.36142 * 121.08264 * 0.02562 * 21 20 19 23 23 C 1.40534 * 119.82184 * 359.97438 * 22 21 20 24 24 N 1.33811 * 120.74038 * 180.02562 * 23 22 21 25 25 C 1.31381 * 121.66380 * 179.71832 * 24 23 22 26 26 O 1.35403 * 119.32209 * 180.28283 * 25 24 23 27 27 C 1.53003 * 109.47015 * 184.99978 * 11 10 9 28 28 C 1.52999 * 117.50284 * 248.75051 * 27 11 10 29 29 C 1.53000 * 117.50341 * 180.08644 * 27 11 10 30 30 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 32 32 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 33 33 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 34 34 H 0.97002 * 120.00310 * 335.00385 * 13 11 10 35 35 H 1.07992 * 120.97081 * 0.02562 * 17 16 14 36 36 H 1.07998 * 120.17908 * 359.95228 * 19 18 17 37 37 H 1.08005 * 119.58286 * 180.02562 * 20 19 18 38 38 H 1.08009 * 119.46020 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.08589 * 179.97438 * 22 21 20 40 40 H 0.96696 * 114.00632 * 270.26106 * 26 25 24 41 41 H 1.09003 * 115.54519 * 34.42267 * 27 11 10 42 42 H 1.08997 * 117.49686 * 0.02562 * 28 27 11 43 43 H 1.09001 * 117.49714 * 145.01868 * 28 27 11 44 44 H 1.08990 * 117.49958 * 214.98279 * 29 27 11 45 45 H 1.08996 * 117.49399 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 1 0.4980 -4.8135 -0.9317 13 7 0.1439 -4.6763 1.1309 14 6 -1.0806 -5.2372 1.0790 15 8 -1.4218 -5.8618 0.0931 16 6 -2.0074 -5.0923 2.2179 17 6 -1.6241 -4.3796 3.3470 18 6 -2.5436 -4.2715 4.4046 19 6 -2.2233 -3.5650 5.5765 20 6 -3.1369 -3.4799 6.5823 21 6 -4.3869 -4.0840 6.4646 22 6 -4.7304 -4.7757 5.3434 23 6 -3.8152 -4.8866 4.2827 24 7 -4.1338 -5.5616 3.1722 25 6 -3.2944 -5.6720 2.1675 26 8 -3.6683 -6.3614 1.0637 27 6 1.8246 -6.1412 0.1256 28 6 1.8347 -7.0691 -1.0908 29 6 1.0021 -7.4312 0.1416 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0039 32 1 2.6848 -3.7145 -0.8894 33 1 2.6847 -3.7144 0.8906 34 1 0.4159 -4.1777 1.9173 35 1 -0.6480 -3.9218 3.4104 36 1 -1.2572 -3.0932 5.6791 37 1 -2.8900 -2.9364 7.4824 38 1 -5.0950 -4.0022 7.2760 39 1 -5.7036 -5.2380 5.2694 40 1 -3.4555 -7.3041 1.0978 41 1 2.7231 -6.1095 0.7420 42 1 1.2997 -6.7379 -1.9809 43 1 2.7397 -7.6482 -1.2745 44 1 1.3596 -8.2482 0.7681 45 1 -0.0811 -7.3383 0.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733177942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:37 Heat of formation + Delta-G solvation = 24.811417 kcal Electronic energy + Delta-G solvation = -29368.528022 eV Core-core repulsion = 25352.691581 eV Total energy + Delta-G solvation = -4015.836441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.20745 -39.70289 -38.31851 -36.98886 -35.91433 -35.04800 -33.95684 -33.19088 -31.28382 -30.37493 -29.88200 -27.98484 -24.94203 -24.13318 -23.69225 -22.36866 -22.16657 -21.55840 -21.16562 -20.10424 -19.14199 -18.31496 -17.77839 -17.09753 -16.56925 -16.06811 -15.79647 -15.23527 -15.11632 -14.93848 -14.69786 -14.50071 -14.24391 -13.85116 -13.56272 -13.52036 -13.40417 -13.14989 -12.88838 -12.21056 -12.08823 -11.85952 -11.72526 -11.57795 -11.48987 -11.27493 -11.08628 -10.94037 -10.86633 -10.67900 -10.20200 -10.18020 -9.99955 -9.94605 -9.73301 -9.37672 -8.96828 -8.87005 -8.66068 -8.44186 -7.01360 -5.82225 -3.12837 0.04776 0.43737 1.68745 2.40077 3.19128 3.28542 3.38910 3.44859 3.47268 3.49814 3.89781 4.08629 4.35154 4.36652 4.51215 4.54080 4.59145 4.85559 4.90342 4.95377 5.06218 5.13661 5.17926 5.24793 5.41591 5.49409 5.50649 5.52405 5.68714 5.75625 5.79533 5.82508 5.86786 6.04576 6.08377 6.17825 6.18574 6.21015 6.33346 6.42706 6.47649 6.56144 6.62284 6.87074 7.46652 7.64457 7.70850 7.78523 8.34911 8.43041 9.47063 10.02148 10.37458 11.39838 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.004042 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.338118 B = 6924.820890 C = 9479.102606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.170 3.830 12 H 0.090 0.910 13 N -0.702 5.702 14 C 0.566 3.434 15 O -0.522 6.522 16 C -0.196 4.196 17 C 0.004 3.996 18 C -0.122 4.122 19 C -0.077 4.077 20 C -0.128 4.128 21 C -0.087 4.087 22 C -0.105 4.105 23 C 0.168 3.832 24 N -0.505 5.505 25 C 0.395 3.605 26 O -0.457 6.457 27 C -0.163 4.163 28 C -0.170 4.170 29 C -0.185 4.185 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.037 0.963 33 H 0.025 0.975 34 H 0.401 0.599 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.404 0.596 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 -14.343 12.890 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.108 0.892 13 N -0.352 5.352 14 C 0.352 3.648 15 O -0.400 6.400 16 C -0.202 4.202 17 C -0.022 4.022 18 C -0.124 4.124 19 C -0.096 4.096 20 C -0.146 4.146 21 C -0.107 4.107 22 C -0.124 4.124 23 C 0.046 3.954 24 N -0.224 5.224 25 C 0.201 3.799 26 O -0.264 6.264 27 C -0.183 4.183 28 C -0.207 4.207 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.236 0.764 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.879 -14.511 11.931 19.409 hybrid contribution 1.273 1.282 0.475 1.868 sum -3.606 -13.229 12.406 18.491 Atomic orbital electron populations 1.69680 1.05112 1.25651 1.57302 1.24753 0.95475 0.97707 1.02743 0.86135 0.78785 0.84117 0.77226 1.20524 1.21822 1.21875 1.19249 0.91054 0.83988 1.43210 0.91042 1.42374 1.06005 0.99733 1.89621 1.20928 0.92988 0.85059 0.99057 1.20838 0.90033 0.92859 0.89741 0.89162 1.45860 1.14238 1.54230 1.20890 1.17693 0.81385 0.79598 0.86167 1.90721 1.75732 1.41240 1.32282 1.21175 0.96212 1.05919 0.96928 1.22067 0.99014 0.90880 0.90255 1.18783 0.95333 1.01907 0.96342 1.21111 1.00153 0.96540 0.91774 1.20933 0.93842 1.00347 0.99450 1.20976 0.96594 0.95677 0.97451 1.20800 0.99359 1.00204 0.92018 1.18653 0.91850 0.93279 0.91629 1.67534 1.34677 1.19954 1.00245 1.19159 0.85665 0.90460 0.84657 1.84743 1.83207 1.25490 1.32998 1.22649 1.01468 0.91388 1.02808 1.22896 1.02005 1.03033 0.92796 1.23259 1.00652 0.97418 1.00903 0.93478 0.78004 0.94568 0.95711 0.76355 0.83099 0.84603 0.85235 0.85123 0.84533 0.73696 0.87874 0.88655 0.89209 0.89937 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.69 5.43 -59.90 -0.33 -18.02 16 10 C 0.15 2.78 5.80 -4.04 -0.02 2.76 16 11 C 0.17 2.77 2.43 -67.93 -0.17 2.60 16 12 H 0.09 1.70 7.33 -51.93 -0.38 1.32 16 13 N -0.70 -10.89 4.45 -54.84 -0.24 -11.14 16 14 C 0.57 9.21 7.10 -12.46 -0.09 9.12 16 15 O -0.52 -9.49 12.17 -16.68 -0.20 -9.70 16 16 C -0.20 -2.92 5.90 -104.71 -0.62 -3.53 16 17 C 0.00 0.05 9.38 -38.45 -0.36 -0.31 16 18 C -0.12 -1.53 5.74 -106.80 -0.61 -2.14 16 19 C -0.08 -0.77 9.77 -39.47 -0.39 -1.16 16 20 C -0.13 -1.09 9.96 -39.93 -0.40 -1.49 16 21 C -0.09 -0.74 9.94 -39.93 -0.40 -1.13 16 22 C -0.11 -1.12 9.97 -39.47 -0.39 -1.52 16 23 C 0.17 2.25 6.61 -84.79 -0.56 1.69 16 24 N -0.50 -7.57 10.33 -10.76 -0.11 -7.68 16 25 C 0.40 6.05 7.74 -16.60 -0.13 5.92 16 26 O -0.46 -6.75 11.59 -39.87 -0.46 -7.21 16 27 C -0.16 -2.21 5.36 -90.62 -0.49 -2.70 16 28 C -0.17 -2.15 10.18 -26.69 -0.27 -2.42 16 29 C -0.19 -2.41 9.74 -26.69 -0.26 -2.67 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.39 10.06 7.34 -40.82 -0.30 9.76 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 5.80 6.67 -40.82 -0.27 5.53 16 35 H 0.15 1.66 6.47 -52.49 -0.34 1.32 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.40 4.03 9.06 45.56 0.41 4.44 16 41 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.12 1.74 5.02 -51.93 -0.26 1.48 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -33.87 377.99 -10.25 -44.12 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -4.91 Total: 18.07 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -5.39 Total: -4.08 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.04 Total: -63.82 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.67 Total: -16.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.87 -10.25 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733177942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.934 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds