Wall clock time and date at job start Tue Mar 31 2020 23:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47239 * 299.99990 * 3 2 1 6 6 H 1.48501 * 109.46793 * 59.99571 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47565 * 65.00686 * 11 10 9 13 13 N 1.46496 * 109.47535 * 305.00097 * 11 10 9 14 14 C 1.34781 * 120.00141 * 155.00410 * 13 11 10 15 15 O 1.21589 * 119.99726 * 359.97438 * 14 13 11 16 16 C 1.47553 * 120.00137 * 180.02562 * 14 13 11 17 17 C 1.38915 * 120.29340 * 359.97438 * 16 14 13 18 18 C 1.40563 * 118.06500 * 180.02562 * 17 16 14 19 19 C 1.40540 * 121.12833 * 180.02562 * 18 17 16 20 20 C 1.36149 * 119.63546 * 180.02562 * 19 18 17 21 21 C 1.39328 * 120.83105 * 359.95838 * 20 19 18 22 22 C 1.36142 * 121.08264 * 0.02562 * 21 20 19 23 23 C 1.40534 * 119.82184 * 359.97438 * 22 21 20 24 24 N 1.33811 * 120.74038 * 180.02562 * 23 22 21 25 25 C 1.31381 * 121.66380 * 179.71832 * 24 23 22 26 26 O 1.35403 * 119.32209 * 180.28283 * 25 24 23 27 27 C 1.53003 * 109.47015 * 184.99978 * 11 10 9 28 28 C 1.52999 * 117.50284 * 248.75051 * 27 11 10 29 29 C 1.53000 * 117.50341 * 180.08644 * 27 11 10 30 30 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 32 32 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 33 33 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 34 34 H 0.97002 * 120.00310 * 335.00385 * 13 11 10 35 35 H 1.07992 * 120.97081 * 0.02562 * 17 16 14 36 36 H 1.07998 * 120.17908 * 359.95228 * 19 18 17 37 37 H 1.08005 * 119.58286 * 180.02562 * 20 19 18 38 38 H 1.08009 * 119.46020 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.08589 * 179.97438 * 22 21 20 40 40 H 0.96696 * 114.00632 * 270.26106 * 26 25 24 41 41 H 1.09003 * 115.54519 * 34.42267 * 27 11 10 42 42 H 1.08997 * 117.49686 * 0.02562 * 28 27 11 43 43 H 1.09001 * 117.49714 * 145.01868 * 28 27 11 44 44 H 1.08990 * 117.49958 * 214.98279 * 29 27 11 45 45 H 1.08996 * 117.49399 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 1 0.4980 -4.8135 -0.9317 13 7 0.1439 -4.6763 1.1309 14 6 -1.0806 -5.2372 1.0790 15 8 -1.4218 -5.8618 0.0931 16 6 -2.0074 -5.0923 2.2179 17 6 -1.6241 -4.3796 3.3470 18 6 -2.5436 -4.2715 4.4046 19 6 -2.2233 -3.5650 5.5765 20 6 -3.1369 -3.4799 6.5823 21 6 -4.3869 -4.0840 6.4646 22 6 -4.7304 -4.7757 5.3434 23 6 -3.8152 -4.8866 4.2827 24 7 -4.1338 -5.5616 3.1722 25 6 -3.2944 -5.6720 2.1675 26 8 -3.6683 -6.3614 1.0637 27 6 1.8246 -6.1412 0.1256 28 6 1.8347 -7.0691 -1.0908 29 6 1.0021 -7.4312 0.1416 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0039 32 1 2.6848 -3.7145 -0.8894 33 1 2.6847 -3.7144 0.8906 34 1 0.4159 -4.1777 1.9173 35 1 -0.6480 -3.9218 3.4104 36 1 -1.2572 -3.0932 5.6791 37 1 -2.8900 -2.9364 7.4824 38 1 -5.0950 -4.0022 7.2760 39 1 -5.7036 -5.2380 5.2694 40 1 -3.4555 -7.3041 1.0978 41 1 2.7231 -6.1095 0.7420 42 1 1.2997 -6.7379 -1.9809 43 1 2.7397 -7.6482 -1.2745 44 1 1.3596 -8.2482 0.7681 45 1 -0.0811 -7.3383 0.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733177942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:36 Heat of formation + Delta-G solvation = 0.603420 kcal Electronic energy + Delta-G solvation = -29369.577760 eV Core-core repulsion = 25352.691581 eV Total energy + Delta-G solvation = -4016.886178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21751 -40.87289 -39.33833 -38.19766 -36.88482 -36.60232 -35.23116 -34.48170 -32.98296 -31.48113 -30.75587 -29.53112 -26.16119 -25.68924 -24.75513 -23.43232 -23.13776 -23.00814 -22.28656 -21.33682 -20.16942 -19.52044 -19.11586 -18.59466 -17.65726 -17.24409 -16.83269 -16.58873 -16.49531 -16.10842 -15.76181 -15.63287 -15.34721 -15.15938 -14.92842 -14.84972 -14.50045 -14.38904 -14.29622 -13.73492 -13.18921 -13.00060 -12.83693 -12.71397 -12.64725 -12.50142 -12.46065 -12.40053 -12.26314 -12.03475 -11.84694 -11.66220 -11.32553 -11.14123 -11.01934 -10.97538 -10.50064 -10.01419 -9.74114 -9.29608 -9.02222 -7.94341 -5.24491 -0.88588 -0.51895 0.80243 1.43893 1.48136 1.49673 1.59222 1.98669 2.17941 2.50393 2.55874 2.95372 3.02742 3.37556 3.40985 3.45538 3.54777 3.60165 3.74631 3.94978 4.03396 4.13305 4.18092 4.18830 4.29147 4.33222 4.37054 4.46423 4.56024 4.61601 4.64596 4.83989 4.88946 4.90884 5.02574 5.06123 5.11955 5.28803 5.30881 5.35711 5.37534 5.45634 5.50890 5.55523 5.82609 6.25544 6.45260 6.54637 6.75072 7.18329 7.33309 8.05991 8.29787 9.28714 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.004042 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.338118 B = 6924.820890 C = 9479.102606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.300 1.300 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.180 3.820 12 H 0.059 0.941 13 N -0.698 5.698 14 C 0.565 3.435 15 O -0.548 6.548 16 C -0.219 4.219 17 C 0.012 3.988 18 C -0.136 4.136 19 C -0.087 4.087 20 C -0.118 4.118 21 C -0.069 4.069 22 C -0.125 4.125 23 C 0.144 3.856 24 N -0.522 5.522 25 C 0.378 3.622 26 O -0.475 6.475 27 C -0.164 4.164 28 C -0.164 4.164 29 C -0.181 4.181 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.406 0.594 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.417 0.583 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 -14.151 15.641 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.228 1.228 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.023 3.977 11 C 0.075 3.925 12 H 0.077 0.923 13 N -0.348 5.348 14 C 0.352 3.648 15 O -0.428 6.428 16 C -0.226 4.226 17 C -0.014 4.014 18 C -0.138 4.138 19 C -0.106 4.106 20 C -0.136 4.136 21 C -0.088 4.088 22 C -0.143 4.143 23 C 0.022 3.978 24 N -0.242 5.242 25 C 0.184 3.816 26 O -0.284 6.284 27 C -0.184 4.184 28 C -0.202 4.202 29 C -0.218 4.218 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.243 0.757 35 H 0.185 0.815 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.186 0.814 39 H 0.162 0.838 40 H 0.279 0.721 41 H 0.142 0.858 42 H 0.099 0.901 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.330 -14.358 14.698 20.815 hybrid contribution 0.765 1.199 -0.246 1.444 sum -2.565 -13.158 14.452 19.713 Atomic orbital electron populations 1.69848 1.06743 1.25862 1.59554 1.25531 0.96194 1.01023 1.03678 0.85105 0.78420 0.79955 0.76446 1.18717 1.22759 1.21958 1.19670 0.91626 0.84972 1.41000 0.90095 1.42554 1.05603 1.00991 1.89531 1.21064 0.93284 0.83674 0.99676 1.20596 0.89419 0.93650 0.88809 0.92324 1.45776 1.14077 1.54220 1.20746 1.17910 0.81509 0.79064 0.86275 1.90698 1.76214 1.42484 1.33413 1.21035 0.96117 1.08052 0.97363 1.22290 0.99702 0.89735 0.89691 1.19010 0.94982 1.02544 0.97258 1.21424 1.01629 0.96326 0.91173 1.21421 0.93123 0.99092 0.99935 1.21457 0.97122 0.93071 0.97160 1.21043 0.99522 1.01519 0.92255 1.19150 0.93079 0.93660 0.91882 1.67527 1.34929 1.20859 1.00853 1.19271 0.86167 0.91230 0.84976 1.84688 1.83417 1.26798 1.33479 1.22559 1.01857 0.89895 1.04068 1.22975 1.02694 1.02567 0.91946 1.23206 0.99470 0.97620 1.01545 0.94215 0.79524 0.94433 0.93684 0.75738 0.81538 0.82667 0.81704 0.81385 0.83754 0.72129 0.85849 0.90117 0.86617 0.87776 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 7 C -0.24 -12.87 9.99 84.03 0.84 -12.03 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -36.09 5.43 -343.44 -1.87 -37.96 16 10 C 0.15 5.54 5.80 86.38 0.50 6.04 16 11 C 0.18 5.93 2.43 44.99 0.11 6.04 16 12 H 0.06 2.32 7.33 -2.39 -0.02 2.30 16 13 N -0.70 -22.15 4.45 -445.68 -1.98 -24.13 16 14 C 0.57 19.36 7.10 86.70 0.62 19.98 16 15 O -0.55 -21.25 12.17 17.01 0.21 -21.04 16 16 C -0.22 -6.87 5.90 -19.92 -0.12 -6.99 16 17 C 0.01 0.31 9.38 23.00 0.22 0.53 16 18 C -0.14 -3.35 5.74 -21.28 -0.12 -3.47 16 19 C -0.09 -1.55 9.77 22.34 0.22 -1.33 16 20 C -0.12 -1.56 9.96 22.05 0.22 -1.34 16 21 C -0.07 -0.92 9.94 22.04 0.22 -0.71 16 22 C -0.12 -2.50 9.97 22.34 0.22 -2.28 16 23 C 0.14 3.88 6.61 40.28 0.27 4.14 16 24 N -0.52 -16.39 10.33 -301.42 -3.11 -19.50 16 25 C 0.38 12.33 7.74 85.50 0.66 12.99 16 26 O -0.47 -15.18 11.59 -65.96 -0.76 -15.94 16 27 C -0.16 -4.26 5.36 -10.79 -0.06 -4.32 16 28 C -0.16 -3.97 10.18 30.62 0.31 -3.66 16 29 C -0.18 -4.58 9.74 30.62 0.30 -4.28 16 30 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.37 19.95 7.34 -92.71 -0.68 19.27 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.41 11.80 6.67 -92.71 -0.62 11.18 16 35 H 0.17 3.62 6.47 -2.91 -0.02 3.60 16 36 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 38 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.42 9.40 9.06 -74.06 -0.67 8.73 16 41 H 0.12 2.74 8.11 -2.39 -0.02 2.72 16 42 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16 43 H 0.12 2.20 8.14 -2.39 -0.02 2.19 16 44 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.09 2.90 5.02 -2.39 -0.01 2.89 16 Total: -1.00 -75.15 377.99 -1.24 -76.39 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: -0.90 Total: 47.94 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 4.87 Total: 5.76 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -6.68 Total: -140.16 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.56 Total: -36.98 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.15 -1.24 -76.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733177942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.994 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds