Wall clock time and date at job start Wed Apr 1 2020 00:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99672 * 2 1 4 4 H 1.48491 * 109.47262 * 269.99761 * 3 2 1 5 5 H 1.48505 * 109.47186 * 30.00245 * 3 2 1 6 6 H 1.48504 * 109.46827 * 149.99951 * 3 2 1 7 7 C 1.38801 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9 13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9 14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10 15 15 O 1.21644 * 119.99733 * 0.02562 * 14 13 11 16 16 C 1.47135 * 120.00743 * 180.02562 * 14 13 11 17 17 C 1.37941 * 120.54602 * 359.72337 * 16 14 13 18 18 N 1.33966 * 122.20210 * 179.72079 * 17 16 14 19 19 H 0.97001 * 118.59763 * 180.25243 * 18 17 16 20 20 C 1.37798 * 122.80193 * 0.59639 * 18 17 16 21 21 C 1.39280 * 120.52453 * 179.70340 * 20 18 17 22 22 C 1.37736 * 119.97082 * 179.97438 * 21 20 18 23 23 C 1.38794 * 120.72808 * 0.02562 * 22 21 20 24 24 C 1.37715 * 120.29104 * 359.93734 * 23 22 21 25 25 C 1.39501 * 119.60644 * 0.08597 * 24 23 22 26 26 C 1.47144 * 120.55711 * 180.02562 * 16 14 13 27 27 O 1.21858 * 121.40809 * 359.97438 * 26 16 14 28 28 C 1.52996 * 109.47215 * 175.00179 * 11 10 9 29 29 C 1.53002 * 117.49888 * 111.25646 * 28 11 10 30 30 C 1.53000 * 117.50107 * 179.91408 * 28 11 10 31 31 H 0.97001 * 120.00226 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99631 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.46694 * 60.00472 * 10 9 7 34 34 H 1.08996 * 109.47259 * 300.00462 * 10 9 7 35 35 H 0.97006 * 119.99923 * 24.99965 * 13 11 10 36 36 H 1.08000 * 118.90632 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.01544 * 0.02562 * 21 20 18 38 38 H 1.07996 * 119.63351 * 180.02562 * 22 21 20 39 39 H 1.07994 * 119.85180 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.19645 * 180.02562 * 24 23 22 41 41 H 1.09002 * 115.54951 * 325.58620 * 28 11 10 42 42 H 1.09000 * 117.49996 * 215.00804 * 29 28 11 43 43 H 1.08999 * 117.49664 * 0.02562 * 29 28 11 44 44 H 1.09008 * 117.49673 * 359.97438 * 30 28 11 45 45 H 1.08999 * 117.49959 * 144.99502 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4973 -4.8139 0.9309 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0795 -5.2367 -1.0813 15 8 -1.4218 -5.8620 -0.0957 16 6 -2.0023 -5.0927 -2.2182 17 6 -1.6281 -4.3813 -3.3392 18 7 -2.4394 -4.2339 -4.3950 19 1 -2.1213 -3.7259 -5.1577 20 6 -3.7091 -4.7674 -4.4411 21 6 -4.5151 -4.5797 -5.5613 22 6 -5.7822 -5.1185 -5.5954 23 6 -6.2708 -5.8503 -4.5220 24 6 -5.4910 -6.0491 -3.4044 25 6 -4.2058 -5.5088 -3.3558 26 6 -3.3421 -5.6996 -2.1757 27 8 -3.7218 -6.3333 -1.2066 28 6 1.8248 -6.1411 -0.1258 29 6 1.8338 -7.0695 1.0903 30 6 1.0023 -7.4311 -0.1430 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.6847 -3.7144 0.8906 34 1 2.6849 -3.7145 -0.8894 35 1 0.4177 -4.1769 -1.9178 36 1 -0.6464 -3.9321 -3.3688 37 1 -4.1464 -4.0126 -6.4033 38 1 -6.4024 -4.9699 -6.4670 39 1 -7.2666 -6.2661 -4.5636 40 1 -5.8725 -6.6191 -2.5703 41 1 2.7239 -6.1092 -0.7413 42 1 2.7387 -7.6484 1.2749 43 1 1.2973 -6.7391 1.9797 44 1 -0.0810 -7.3384 -0.0643 45 1 1.3602 -8.2478 -0.7698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754444516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:57 Heat of formation + Delta-G solvation = 16.146455 kcal Electronic energy + Delta-G solvation = -29234.354129 eV Core-core repulsion = 25218.141948 eV Total energy + Delta-G solvation = -4016.212182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20207 -39.51971 -37.94033 -37.53874 -36.67576 -34.94196 -33.40726 -32.17522 -31.32829 -30.69850 -30.05569 -27.86587 -24.56196 -24.24539 -23.83617 -22.50304 -22.04902 -21.49904 -21.09157 -19.96118 -18.72448 -18.51892 -17.92384 -17.17166 -16.20271 -15.94409 -15.74252 -15.36837 -15.02055 -14.86542 -14.79208 -14.55675 -14.29085 -14.14283 -13.70117 -13.47960 -13.19773 -13.18472 -12.91808 -12.74987 -12.31834 -12.23261 -12.04185 -11.59906 -11.58250 -11.11474 -10.98667 -10.90649 -10.81609 -10.18481 -10.02268 -9.89288 -9.76590 -9.65413 -9.50836 -9.30781 -9.13163 -8.92938 -8.49471 -7.91506 -6.98054 -5.80307 -3.10298 0.54139 0.59654 1.47792 2.54376 2.69322 3.38427 3.41138 3.45517 3.45915 3.47156 3.97828 4.04676 4.24041 4.33499 4.50051 4.54010 4.70603 4.75825 4.85265 4.97221 4.98383 5.26325 5.29426 5.37924 5.43316 5.51697 5.53848 5.57232 5.67908 5.73369 5.88042 5.95054 5.99168 6.05980 6.16598 6.24332 6.29448 6.31181 6.45862 6.54732 6.64475 6.66911 6.73354 6.74447 7.05411 7.65724 7.95327 8.01187 8.37355 8.77732 9.49210 10.05767 10.41564 11.41692 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.003530 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.317804 B = 7929.521729 C =10203.739597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.172 3.828 12 H 0.088 0.912 13 N -0.713 5.713 14 C 0.580 3.420 15 O -0.521 6.521 16 C -0.320 4.320 17 C 0.213 3.787 18 N -0.596 5.596 19 H 0.422 0.578 20 C 0.183 3.817 21 C -0.169 4.169 22 C -0.062 4.062 23 C -0.156 4.156 24 C -0.032 4.032 25 C -0.182 4.182 26 C 0.432 3.568 27 O -0.450 6.450 28 C -0.163 4.163 29 C -0.172 4.172 30 C -0.185 4.185 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.035 0.965 34 H 0.024 0.976 35 H 0.394 0.606 36 H 0.170 0.830 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 -12.212 -15.864 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.067 3.933 12 H 0.106 0.894 13 N -0.364 5.364 14 C 0.367 3.633 15 O -0.398 6.398 16 C -0.332 4.332 17 C 0.080 3.920 18 N -0.204 5.204 19 H 0.259 0.741 20 C 0.082 3.918 21 C -0.190 4.190 22 C -0.081 4.081 23 C -0.175 4.175 24 C -0.050 4.050 25 C -0.186 4.186 26 C 0.313 3.687 27 O -0.327 6.327 28 C -0.183 4.183 29 C -0.209 4.209 30 C -0.221 4.221 31 H 0.065 0.935 32 H 0.221 0.779 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.229 0.771 36 H 0.187 0.813 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.161 -12.906 -14.556 20.730 hybrid contribution 0.642 1.701 -0.883 2.021 sum -6.519 -11.205 -15.439 20.160 Atomic orbital electron populations 1.69676 1.05059 1.25638 1.57486 1.24741 0.95483 0.97638 1.02951 0.86207 0.78726 0.83924 0.77405 1.21823 1.21795 1.20752 1.19217 0.91020 0.84062 1.42947 0.91153 1.42376 1.06054 0.99713 1.89550 1.20918 0.93035 0.85133 0.98886 1.20752 0.89998 0.92549 0.90010 0.89360 1.45832 1.14603 1.55365 1.20628 1.17278 0.80814 0.79108 0.86081 1.90755 1.75585 1.40969 1.32491 1.21966 0.99972 1.13938 0.97292 1.22111 0.94318 0.90134 0.85437 1.40829 1.12263 1.49054 1.18217 0.74136 1.17921 0.84592 0.94360 0.94924 1.20712 0.95350 1.05582 0.97357 1.21094 0.94390 0.94386 0.98256 1.21148 1.00742 1.01711 0.93930 1.21171 0.91265 0.94748 0.97841 1.20346 0.97620 1.04571 0.96085 1.19332 0.85095 0.78816 0.85436 1.90738 1.74646 1.34066 1.33222 1.22643 1.01357 0.91614 1.02647 1.22888 1.01965 1.03205 0.92883 1.23287 1.00977 0.97261 1.00621 0.93517 0.77937 0.94686 0.95846 0.77075 0.81282 0.84838 0.85060 0.85116 0.84179 0.88054 0.89350 0.88745 0.86238 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.79 5.43 -59.91 -0.33 -18.11 16 10 C 0.15 2.87 5.80 -4.04 -0.02 2.84 16 11 C 0.17 2.99 2.43 -67.93 -0.17 2.82 16 12 H 0.09 1.79 7.33 -51.93 -0.38 1.41 16 13 N -0.71 -11.61 4.45 -54.98 -0.24 -11.85 16 14 C 0.58 10.56 7.09 -12.65 -0.09 10.47 16 15 O -0.52 -11.47 12.58 -14.89 -0.19 -11.66 16 16 C -0.32 -4.97 6.04 -102.78 -0.62 -5.59 16 17 C 0.21 2.27 10.65 -16.73 -0.18 2.09 16 18 N -0.60 -4.83 5.21 -10.42 -0.05 -4.89 16 19 H 0.42 1.76 8.73 -40.82 -0.36 1.41 16 20 C 0.18 1.81 6.66 -83.94 -0.56 1.25 16 21 C -0.17 -1.22 9.87 -39.38 -0.39 -1.61 16 22 C -0.06 -0.43 10.01 -39.56 -0.40 -0.82 16 23 C -0.16 -1.27 10.03 -39.57 -0.40 -1.67 16 24 C -0.03 -0.35 9.65 -39.30 -0.38 -0.73 16 25 C -0.18 -2.37 5.89 -104.81 -0.62 -2.99 16 26 C 0.43 7.33 7.15 -32.21 -0.23 7.10 16 27 O -0.45 -9.32 15.85 -15.08 -0.24 -9.55 16 28 C -0.16 -2.42 5.36 -90.62 -0.49 -2.91 16 29 C -0.17 -2.45 10.18 -26.69 -0.27 -2.72 16 30 C -0.18 -2.80 9.73 -26.70 -0.26 -3.06 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.39 10.12 7.33 -40.82 -0.30 9.82 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.39 5.60 6.61 -40.82 -0.27 5.33 16 36 H 0.17 1.37 6.31 -52.49 -0.33 1.03 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.14 1.57 7.79 -52.49 -0.41 1.16 16 41 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.43 8.05 -51.93 -0.42 1.01 16 44 H 0.12 2.18 5.02 -51.92 -0.26 1.92 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -37.20 377.64 -10.62 -47.81 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -5.65 Total: 15.12 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -5.31 Total: -2.59 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.10 Total: -61.61 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.43 Total: -21.22 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.20 -10.62 -47.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754444516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.960 kcal (2) G-P(sol) polarization free energy of solvation -37.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds