Wall clock time and date at job start Wed Apr 1 2020 00:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99672 * 2 1 4 4 H 1.48491 * 109.47262 * 269.99761 * 3 2 1 5 5 H 1.48505 * 109.47186 * 30.00245 * 3 2 1 6 6 H 1.48504 * 109.46827 * 149.99951 * 3 2 1 7 7 C 1.38801 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00019 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00458 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9 13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9 14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10 15 15 O 1.21644 * 119.99733 * 0.02562 * 14 13 11 16 16 C 1.47135 * 120.00743 * 180.02562 * 14 13 11 17 17 C 1.37941 * 120.54602 * 359.72337 * 16 14 13 18 18 N 1.33966 * 122.20210 * 179.72079 * 17 16 14 19 19 H 0.97001 * 118.59763 * 180.25243 * 18 17 16 20 20 C 1.37798 * 122.80193 * 0.59639 * 18 17 16 21 21 C 1.39280 * 120.52453 * 179.70340 * 20 18 17 22 22 C 1.37736 * 119.97082 * 179.97438 * 21 20 18 23 23 C 1.38794 * 120.72808 * 0.02562 * 22 21 20 24 24 C 1.37715 * 120.29104 * 359.93734 * 23 22 21 25 25 C 1.39501 * 119.60644 * 0.08597 * 24 23 22 26 26 C 1.47144 * 120.55711 * 180.02562 * 16 14 13 27 27 O 1.21858 * 121.40809 * 359.97438 * 26 16 14 28 28 C 1.52996 * 109.47215 * 175.00179 * 11 10 9 29 29 C 1.53002 * 117.49888 * 111.25646 * 28 11 10 30 30 C 1.53000 * 117.50107 * 179.91408 * 28 11 10 31 31 H 0.97001 * 120.00226 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99631 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.46694 * 60.00472 * 10 9 7 34 34 H 1.08996 * 109.47259 * 300.00462 * 10 9 7 35 35 H 0.97006 * 119.99923 * 24.99965 * 13 11 10 36 36 H 1.08000 * 118.90632 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.01544 * 0.02562 * 21 20 18 38 38 H 1.07996 * 119.63351 * 180.02562 * 22 21 20 39 39 H 1.07994 * 119.85180 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.19645 * 180.02562 * 24 23 22 41 41 H 1.09002 * 115.54951 * 325.58620 * 28 11 10 42 42 H 1.09000 * 117.49996 * 215.00804 * 29 28 11 43 43 H 1.08999 * 117.49664 * 0.02562 * 29 28 11 44 44 H 1.09008 * 117.49673 * 359.97438 * 30 28 11 45 45 H 1.08999 * 117.49959 * 144.99502 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4973 -4.8139 0.9309 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0795 -5.2367 -1.0813 15 8 -1.4218 -5.8620 -0.0957 16 6 -2.0023 -5.0927 -2.2182 17 6 -1.6281 -4.3813 -3.3392 18 7 -2.4394 -4.2339 -4.3950 19 1 -2.1213 -3.7259 -5.1577 20 6 -3.7091 -4.7674 -4.4411 21 6 -4.5151 -4.5797 -5.5613 22 6 -5.7822 -5.1185 -5.5954 23 6 -6.2708 -5.8503 -4.5220 24 6 -5.4910 -6.0491 -3.4044 25 6 -4.2058 -5.5088 -3.3558 26 6 -3.3421 -5.6996 -2.1757 27 8 -3.7218 -6.3333 -1.2066 28 6 1.8248 -6.1411 -0.1258 29 6 1.8338 -7.0695 1.0903 30 6 1.0023 -7.4311 -0.1430 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.6847 -3.7144 0.8906 34 1 2.6849 -3.7145 -0.8894 35 1 0.4177 -4.1769 -1.9178 36 1 -0.6464 -3.9321 -3.3688 37 1 -4.1464 -4.0126 -6.4033 38 1 -6.4024 -4.9699 -6.4670 39 1 -7.2666 -6.2661 -4.5636 40 1 -5.8725 -6.6191 -2.5703 41 1 2.7239 -6.1092 -0.7413 42 1 2.7387 -7.6484 1.2749 43 1 1.2973 -6.7391 1.9797 44 1 -0.0810 -7.3384 -0.0643 45 1 1.3602 -8.2478 -0.7698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754444516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:56 Heat of formation + Delta-G solvation = -9.367258 kcal Electronic energy + Delta-G solvation = -29235.460487 eV Core-core repulsion = 25218.141948 eV Total energy + Delta-G solvation = -4017.318539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12754 -40.80040 -39.12591 -38.43353 -37.93179 -36.59247 -34.98917 -33.41545 -32.69266 -31.79166 -30.98012 -29.45652 -26.05090 -25.27306 -25.06159 -23.41336 -23.27218 -23.03976 -22.24745 -21.30980 -19.80042 -19.41352 -19.05478 -18.85069 -17.39444 -17.14898 -16.81981 -16.62060 -16.59436 -16.09019 -15.81690 -15.66907 -15.32964 -15.13585 -15.07190 -14.86929 -14.78808 -14.44751 -14.34352 -13.94911 -13.66168 -13.15686 -13.08575 -12.90838 -12.77695 -12.68063 -12.44136 -12.29014 -12.27787 -12.06480 -11.82104 -11.28638 -11.11229 -10.99072 -10.92594 -10.40722 -10.38448 -10.06950 -9.87946 -8.98833 -8.85808 -7.90957 -5.21153 -0.34467 -0.24300 0.65652 1.49858 1.52509 1.60331 1.62046 1.75995 2.14809 2.42462 2.58190 2.93255 3.01138 3.16116 3.43033 3.55779 3.61437 3.70656 3.81516 3.98442 4.00217 4.14113 4.17630 4.25755 4.30479 4.32306 4.44705 4.48931 4.58847 4.65326 4.78259 4.82257 4.88732 4.95026 4.99381 5.05954 5.15978 5.31296 5.37684 5.41914 5.47950 5.52262 5.53859 5.65517 5.87729 6.11422 6.28543 6.72390 6.84167 7.36273 7.46204 8.09081 8.34007 9.31777 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.003530 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.317804 B = 7929.521729 C =10203.739597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.153 3.847 11 C 0.180 3.820 12 H 0.048 0.952 13 N -0.703 5.703 14 C 0.575 3.425 15 O -0.574 6.574 16 C -0.380 4.380 17 C 0.261 3.739 18 N -0.566 5.566 19 H 0.447 0.553 20 C 0.168 3.832 21 C -0.150 4.150 22 C -0.054 4.054 23 C -0.144 4.144 24 C -0.062 4.062 25 C -0.210 4.210 26 C 0.413 3.587 27 O -0.522 6.522 28 C -0.156 4.156 29 C -0.166 4.166 30 C -0.188 4.188 31 H 0.249 0.751 32 H 0.373 0.627 33 H 0.035 0.965 34 H 0.050 0.950 35 H 0.406 0.594 36 H 0.203 0.797 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.157 0.843 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -10.963 -20.605 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.208 1.208 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.026 3.974 11 C 0.074 3.926 12 H 0.066 0.934 13 N -0.355 5.355 14 C 0.365 3.635 15 O -0.455 6.455 16 C -0.392 4.392 17 C 0.122 3.878 18 N -0.174 5.174 19 H 0.289 0.711 20 C 0.067 3.933 21 C -0.170 4.170 22 C -0.072 4.072 23 C -0.162 4.162 24 C -0.080 4.080 25 C -0.213 4.213 26 C 0.300 3.700 27 O -0.405 6.405 28 C -0.175 4.175 29 C -0.204 4.204 30 C -0.225 4.225 31 H 0.058 0.942 32 H 0.205 0.795 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.243 0.757 36 H 0.219 0.781 37 H 0.196 0.804 38 H 0.193 0.807 39 H 0.174 0.826 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.743 -11.643 -19.403 23.345 hybrid contribution 0.115 1.314 0.408 1.381 sum -5.628 -10.328 -18.995 22.341 Atomic orbital electron populations 1.69850 1.06657 1.25867 1.59531 1.25520 0.96215 1.00939 1.03759 0.85162 0.77506 0.79584 0.77582 1.20778 1.23035 1.19730 1.19629 0.91598 0.84947 1.41041 0.90165 1.42549 1.05629 1.00905 1.89513 1.21029 0.93097 0.83560 0.99708 1.20515 0.89489 0.93580 0.88972 0.93420 1.45657 1.14045 1.55215 1.20563 1.17724 0.81262 0.78206 0.86286 1.90720 1.76600 1.43414 1.34750 1.21655 0.99807 1.18762 0.98959 1.22339 0.95061 0.86454 0.83927 1.40927 1.11372 1.47154 1.17950 0.71054 1.18122 0.85487 0.94611 0.95094 1.21254 0.94716 1.04106 0.96881 1.21659 0.94588 0.92294 0.98666 1.21514 1.01228 1.00634 0.92839 1.21207 0.91649 0.96106 0.99075 1.20281 0.98111 1.06995 0.95962 1.20042 0.86231 0.77751 0.85947 1.90675 1.76145 1.37790 1.35925 1.22592 1.01619 0.89816 1.03500 1.22969 1.02577 1.02961 0.91858 1.23157 0.99125 0.98280 1.01942 0.94226 0.79471 0.94757 0.93190 0.75729 0.78080 0.80376 0.80747 0.82564 0.86225 0.85194 0.86246 0.90651 0.89872 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.00 13.06 21.65 0.28 -57.71 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 44.50 29.55 68.60 2.03 46.52 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -12.76 9.99 84.03 0.84 -11.93 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -36.20 5.43 -343.46 -1.87 -38.07 16 10 C 0.15 5.80 5.80 86.38 0.50 6.30 16 11 C 0.18 6.45 2.43 44.99 0.11 6.56 16 12 H 0.05 2.11 7.33 -2.39 -0.02 2.09 16 13 N -0.70 -23.71 4.45 -446.09 -1.98 -25.70 16 14 C 0.58 22.84 7.09 86.58 0.61 23.45 16 15 O -0.57 -28.42 12.58 15.08 0.19 -28.23 16 16 C -0.38 -12.66 6.04 -18.67 -0.11 -12.77 16 17 C 0.26 5.23 10.65 84.30 0.90 6.12 16 18 N -0.57 -7.45 5.21 -186.88 -0.97 -8.42 16 19 H 0.45 1.43 8.73 -92.71 -0.81 0.62 16 20 C 0.17 2.94 6.66 39.01 0.26 3.20 16 21 C -0.15 -1.40 9.87 22.40 0.22 -1.18 16 22 C -0.05 -0.47 10.01 22.28 0.22 -0.24 16 23 C -0.14 -2.02 10.03 22.28 0.22 -1.80 16 24 C -0.06 -1.46 9.65 22.45 0.22 -1.24 16 25 C -0.21 -5.73 5.89 -19.99 -0.12 -5.85 16 26 C 0.41 15.66 7.15 27.05 0.19 15.85 16 27 O -0.52 -24.99 15.85 14.39 0.23 -24.76 16 28 C -0.16 -4.56 5.36 -10.79 -0.06 -4.62 16 29 C -0.17 -4.75 10.18 30.62 0.31 -4.43 16 30 C -0.19 -5.86 9.73 30.62 0.30 -5.56 16 31 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.37 20.10 7.33 -92.71 -0.68 19.42 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.41 11.29 6.61 -92.70 -0.61 10.67 16 36 H 0.20 2.69 6.31 -2.91 -0.02 2.67 16 37 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 39 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.12 3.18 7.79 -2.91 -0.02 3.16 16 41 H 0.13 3.11 8.11 -2.39 -0.02 3.09 16 42 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 44 H 0.08 3.34 5.02 -2.38 -0.01 3.32 16 45 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -91.23 377.64 1.96 -89.27 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -1.03 Total: 38.75 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 5.09 Total: 8.35 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -4.54 Total: -129.90 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: 0.42 Total: -52.99 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -91.23 1.96 -89.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754444516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.898 kcal (2) G-P(sol) polarization free energy of solvation -91.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds