Wall clock time and date at job start Tue Mar 31 2020 23:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53011 * 109.47010 * 2 1 4 4 H 1.08999 * 109.47156 * 54.99881 * 3 2 1 5 5 C 1.52999 * 109.46600 * 294.99834 * 3 2 1 6 6 C 1.52997 * 109.46991 * 175.00016 * 3 2 1 7 7 H 1.09004 * 109.47212 * 65.74961 * 6 3 2 8 8 C 1.53007 * 109.46900 * 185.74728 * 6 3 2 9 9 N 1.46499 * 109.47203 * 184.03422 * 8 6 3 10 10 S 1.65596 * 120.00083 * 94.81252 * 9 8 6 11 11 O 1.42102 * 106.40536 * 309.92150 * 10 9 8 12 12 O 1.42096 * 106.40394 * 177.00035 * 10 9 8 13 13 C 1.76205 * 107.21588 * 63.45933 * 10 9 8 14 14 C 1.37633 * 120.12900 * 245.03786 * 13 10 9 15 15 C 1.38613 * 120.24750 * 179.74910 * 14 13 10 16 16 C 1.38657 * 120.50332 * 0.24964 * 15 14 13 17 17 C 1.37597 * 120.24853 * 0.02895 * 16 15 14 18 18 C 1.40703 * 120.12693 * 65.31015 * 13 10 9 19 19 C 1.41392 * 120.24155 * 359.97438 * 18 13 10 20 20 H 1.08000 * 120.00544 * 330.49742 * 19 18 13 21 21 C 1.39954 * 119.99941 * 150.49588 * 19 18 13 22 22 N 1.30820 * 119.99578 * 348.61349 * 21 19 18 23 23 Si 1.86790 * 120.00183 * 168.60642 * 21 19 18 24 24 H 1.48500 * 109.47284 * 65.00288 * 23 21 19 25 25 H 1.48498 * 109.47512 * 185.00357 * 23 21 19 26 26 H 1.48506 * 109.47281 * 305.00478 * 23 21 19 27 27 O 1.42898 * 109.47438 * 305.75224 * 6 3 2 28 28 C 1.42894 * 114.00395 * 136.57586 * 27 6 3 29 29 H 1.08995 * 109.47392 * 60.00474 * 1 2 3 30 30 H 1.08997 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47045 * 300.00081 * 1 2 3 32 32 H 1.08996 * 109.47673 * 240.00197 * 2 1 3 33 33 H 1.09002 * 109.47620 * 119.99850 * 2 1 3 34 34 H 1.09005 * 109.46937 * 62.61441 * 5 3 2 35 35 H 1.08999 * 109.46705 * 182.61065 * 5 3 2 36 36 H 1.08996 * 109.47389 * 302.61376 * 5 3 2 37 37 H 1.08998 * 109.46729 * 64.03879 * 8 6 3 38 38 H 1.08997 * 109.47049 * 304.03574 * 8 6 3 39 39 H 0.97002 * 119.99859 * 274.81987 * 9 8 6 40 40 H 1.08005 * 119.87868 * 0.02562 * 14 13 10 41 41 H 1.08002 * 119.74906 * 180.23233 * 15 14 13 42 42 H 1.07998 * 119.87791 * 179.97438 * 16 15 14 43 43 H 1.07992 * 120.12942 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00196 * 180.02562 * 22 21 19 45 45 H 1.09007 * 109.46941 * 305.24164 * 28 27 6 46 46 H 1.08999 * 109.47252 * 65.23645 * 28 27 6 47 47 H 1.08996 * 109.47389 * 185.23985 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 4.0034 0.9957 -0.7656 8 6 4.0629 2.8840 0.2698 9 7 5.5277 2.8938 0.2934 10 16 6.3766 3.1540 -1.1044 11 8 5.8412 2.2608 -2.0712 12 8 7.7503 3.1744 -0.7417 13 6 5.9839 4.7801 -1.6580 14 6 5.3099 4.9621 -2.8442 15 6 4.9952 6.2399 -3.2795 16 6 5.3590 7.3483 -2.5300 17 6 6.0384 7.1904 -1.3438 18 6 6.3632 5.8977 -0.8921 19 6 7.0605 5.7231 0.3255 20 1 6.9064 4.8300 0.9129 21 6 7.9506 6.7077 0.7696 22 7 8.3084 7.6762 -0.0337 23 14 8.6273 6.6389 2.5092 24 1 9.4731 5.4281 2.6639 25 1 9.4451 7.8506 2.7705 26 1 7.5018 6.5833 3.4764 27 8 3.9488 0.6899 1.2769 28 6 5.0593 -0.1819 1.0566 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5480 2.1666 -1.3750 35 1 2.0380 3.1391 -1.3275 36 1 2.0311 1.5611 -2.1510 37 1 3.6817 3.3090 1.1983 38 1 3.7091 3.4770 -0.5735 39 1 6.0003 2.7479 1.1279 40 1 5.0212 4.1059 -3.4358 41 1 4.4629 6.3733 -4.2096 42 1 5.1091 8.3393 -2.8789 43 1 6.3211 8.0550 -0.7618 44 1 8.9256 8.3584 0.2738 45 1 4.8460 -0.8353 0.2105 46 1 5.9493 0.4101 0.8431 47 1 5.2297 -0.7856 1.9480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601425708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:07 Heat of formation + Delta-G solvation = -142.662718 kcal Electronic energy + Delta-G solvation = -29412.857945 eV Core-core repulsion = 25492.910481 eV Total energy + Delta-G solvation = -3919.947464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 5.73 seconds Orbital eigenvalues (eV) -39.99540 -39.38756 -38.03081 -36.68429 -36.52881 -35.79164 -35.54527 -32.04052 -31.47446 -31.31911 -28.69446 -27.37406 -26.90557 -25.73049 -23.45748 -23.00293 -22.72656 -20.91206 -20.34650 -19.50974 -18.71056 -18.04840 -17.38069 -17.36725 -17.05746 -16.42641 -16.21067 -15.99563 -15.60565 -15.43685 -15.10147 -14.93517 -14.46704 -14.41466 -14.32145 -13.82508 -13.72299 -13.37746 -13.28553 -13.07772 -13.01085 -12.91809 -12.86484 -12.78769 -12.72408 -12.68077 -12.50499 -12.39510 -12.16928 -12.06796 -11.66614 -11.54453 -11.48756 -11.36878 -11.27438 -11.17521 -10.92476 -9.87827 -9.84253 -9.43346 -8.80272 -6.62523 -0.18901 0.52012 0.97257 1.35935 1.47200 1.51938 2.15371 2.31928 2.63105 2.83106 2.95473 3.45028 3.73818 3.87868 3.98162 4.09865 4.14222 4.33062 4.37796 4.38840 4.50052 4.56224 4.56737 4.64271 4.67806 4.72133 4.76934 4.80435 4.86867 4.91563 4.97034 5.09469 5.13560 5.16543 5.22662 5.28390 5.29401 5.33249 5.51205 5.52175 5.60125 5.69924 5.81287 5.99802 6.07331 6.16454 6.29758 6.46394 6.66959 6.82327 8.16328 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.004345 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.313826 B = 6442.611232 C = 7382.341680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.088 4.088 4 H 0.085 0.915 5 C -0.155 4.155 6 C 0.070 3.930 7 H 0.061 0.939 8 C 0.106 3.894 9 N -1.108 6.108 10 S 2.715 3.285 11 O -1.003 7.003 12 O -1.003 7.003 13 C -0.792 4.792 14 C -0.016 4.016 15 C -0.247 4.247 16 C -0.075 4.075 17 C -0.185 4.185 18 C 0.164 3.836 19 C -0.478 4.478 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.809 5.809 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.262 1.262 26 H -0.244 1.244 27 O -0.383 6.383 28 C 0.023 3.977 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.420 0.580 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.295 0.705 45 H 0.045 0.955 46 H 0.028 0.972 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 -8.777 3.457 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.107 4.107 4 H 0.103 0.897 5 C -0.212 4.212 6 C 0.010 3.990 7 H 0.080 0.920 8 C -0.021 4.021 9 N -0.866 5.866 10 S 2.810 3.190 11 O -0.993 6.993 12 O -0.993 6.993 13 C -0.886 4.886 14 C -0.035 4.035 15 C -0.267 4.267 16 C -0.093 4.093 17 C -0.205 4.205 18 C 0.159 3.841 19 C -0.506 4.506 20 H 0.110 0.890 21 C -0.178 4.178 22 N -0.434 5.434 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.186 1.186 26 H -0.168 1.168 27 O -0.301 6.301 28 C -0.073 4.073 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.255 0.745 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.130 0.870 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.865 -9.145 3.056 14.527 hybrid contribution 0.889 0.915 0.467 1.359 sum -9.975 -8.230 3.523 13.404 Atomic orbital electron populations 1.21787 0.94638 1.01955 1.02200 1.21463 0.96708 0.95181 1.01823 1.21288 0.91964 0.98043 0.99415 0.89660 1.21984 1.02641 1.00352 0.96224 1.22843 0.95982 0.91463 0.88666 0.92040 1.21873 0.78295 0.97104 1.04778 1.55226 1.15977 1.89035 1.26379 1.00576 0.72131 0.73776 0.72479 1.93428 1.80655 1.64048 1.61156 1.93489 1.34117 1.88259 1.83433 1.30138 1.29304 1.19875 1.09305 1.20582 0.92325 0.97880 0.92751 1.20903 1.10671 0.92223 1.02941 1.21261 0.95411 0.98542 0.94108 1.21537 1.02686 0.97546 0.98688 1.17304 0.85411 0.90993 0.90381 1.20116 1.20173 1.05290 1.05055 0.88986 1.26789 0.94875 0.92912 1.03271 1.69808 1.25188 1.10835 1.37521 0.85352 0.79517 0.79309 0.76486 1.18777 1.18557 1.16782 1.87803 1.49923 1.57251 1.35164 1.22977 0.88409 0.93129 1.02807 0.92116 0.92304 0.92456 0.92786 0.91730 0.90144 0.92710 0.92871 0.88229 0.89662 0.74543 0.85834 0.85339 0.85905 0.86991 0.89378 0.93649 0.95353 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.67 71.98 0.70 -1.61 16 2 C -0.11 -2.22 5.28 30.60 0.16 -2.06 16 3 C -0.09 -1.92 2.16 -10.79 -0.02 -1.94 16 4 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.15 -3.28 8.71 71.98 0.63 -2.65 16 6 C 0.07 1.89 2.03 30.60 0.06 1.95 16 7 H 0.06 1.87 7.02 -2.38 -0.02 1.85 16 8 C 0.11 3.14 5.74 86.38 0.50 3.64 16 9 N -1.11 -38.37 4.06 -187.49 -0.76 -39.13 16 10 S 2.71 118.09 4.88 -56.49 -0.28 117.82 16 11 O -1.00 -43.73 16.20 -128.00 -2.07 -45.80 16 12 O -1.00 -50.92 16.56 -128.00 -2.12 -53.04 16 13 C -0.79 -37.53 5.69 22.73 0.13 -37.40 16 14 C -0.02 -0.68 9.53 22.22 0.21 -0.47 16 15 C -0.25 -10.14 10.05 22.46 0.23 -9.91 16 16 C -0.07 -3.21 10.02 22.22 0.22 -2.99 16 17 C -0.18 -9.13 8.65 22.73 0.20 -8.94 16 18 C 0.16 8.38 5.53 -21.29 -0.12 8.26 16 19 C -0.48 -24.29 7.60 23.46 0.18 -24.12 16 20 H 0.09 4.36 5.84 -2.91 -0.02 4.34 16 21 C 0.04 1.91 5.23 85.26 0.45 2.36 16 22 N -0.81 -40.55 10.95 21.83 0.24 -40.31 16 23 Si 0.97 36.70 29.57 68.60 2.03 38.73 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 26 H -0.24 -8.57 7.11 99.48 0.71 -7.86 16 27 O -0.38 -10.06 9.28 -148.98 -1.38 -11.44 16 28 C 0.02 0.56 10.71 113.37 1.21 1.77 16 29 H 0.06 0.88 6.62 -2.39 -0.02 0.87 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.33 7.37 -2.39 -0.02 1.31 16 34 H 0.08 1.37 6.69 -2.38 -0.02 1.35 16 35 H 0.05 1.24 6.39 -2.39 -0.02 1.23 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.09 2.59 5.99 -2.39 -0.01 2.57 16 39 H 0.42 13.32 8.67 -96.74 -0.84 12.48 16 40 H 0.12 4.89 7.33 -2.91 -0.02 4.87 16 41 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 42 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.11 5.68 6.33 -2.91 -0.02 5.66 16 44 H 0.30 13.28 8.30 -92.71 -0.77 12.52 16 45 H 0.04 1.02 8.02 -2.38 -0.02 1.00 16 46 H 0.03 0.74 7.35 -2.39 -0.02 0.72 16 47 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -63.89 384.47 0.52 -63.37 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: 0.14 Total: 43.92 kcal Atomic # 6 Polarization: -78.83 SS G_CDS: 4.73 Total: -74.11 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -0.52 Total: -79.44 kcal Atomic # 8 Polarization: -104.72 SS G_CDS: -5.57 Total: -110.29 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: 118.09 SS G_CDS: -0.28 Total: 117.82 kcal Total: -63.89 0.52 -63.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.292 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.73 seconds