Wall clock time and date at job start Wed Apr 1 2020 01:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53002 * 109.47645 * 174.99822 * 4 2 1 6 6 H 1.09009 * 109.46393 * 55.00173 * 5 4 2 7 7 O 1.42898 * 109.47110 * 295.00674 * 5 4 2 8 8 C 1.50697 * 109.47440 * 174.99944 * 5 4 2 9 9 C 1.38235 * 119.99660 * 84.72800 * 8 5 4 10 10 C 1.38239 * 119.99859 * 179.78653 * 9 8 5 11 11 C 1.38229 * 119.99925 * 0.44819 * 10 9 8 12 12 C 1.38238 * 120.00022 * 359.80783 * 11 10 9 13 13 C 1.38224 * 119.99919 * 359.97438 * 12 11 10 14 14 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 15 15 S 1.65595 * 120.00153 * 265.00098 * 14 2 1 16 16 O 1.42094 * 104.27936 * 181.07005 * 15 14 2 17 17 O 1.42106 * 104.27597 * 308.92873 * 15 14 2 18 18 C 1.81402 * 104.44891 * 64.99572 * 15 14 2 19 19 C 1.52998 * 109.46884 * 180.02562 * 18 15 14 20 20 C 1.52999 * 109.47127 * 180.02562 * 19 18 15 21 21 C 1.50703 * 109.47552 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99544 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00155 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99924 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46961 * 89.99945 * 25 23 21 27 27 H 1.48498 * 109.47257 * 209.99992 * 25 23 21 28 28 H 1.48498 * 109.47311 * 330.00113 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 33 33 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 34 34 H 0.96699 * 113.99565 * 299.99318 * 7 5 4 35 35 H 1.08004 * 120.00117 * 0.02562 * 9 8 5 36 36 H 1.07999 * 119.99746 * 180.27341 * 10 9 8 37 37 H 1.08007 * 119.99939 * 179.83201 * 11 10 9 38 38 H 1.08003 * 119.99931 * 180.02562 * 12 11 10 39 39 H 1.08004 * 120.00306 * 180.02562 * 13 12 11 40 40 H 0.96995 * 119.99699 * 84.99801 * 14 2 1 41 41 H 1.08998 * 109.47249 * 299.99880 * 18 15 14 42 42 H 1.08994 * 109.46963 * 60.00537 * 18 15 14 43 43 H 1.09006 * 109.47286 * 299.99492 * 19 18 15 44 44 H 1.09000 * 109.47597 * 59.99719 * 19 18 15 45 45 H 1.08998 * 109.47238 * 299.99922 * 20 19 18 46 46 H 1.09000 * 109.47279 * 59.99320 * 20 19 18 47 47 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 8 3.9386 0.7548 -1.4881 8 6 4.0774 -1.4260 -2.4747 9 6 4.1118 -0.8752 -3.7421 10 6 4.5861 -1.6191 -4.8064 11 6 5.0171 -2.9169 -4.6048 12 6 4.9777 -3.4695 -3.3383 13 6 4.5077 -2.7241 -2.2734 14 7 2.0184 -0.6906 1.1962 15 16 2.4122 0.1771 2.5505 16 8 2.8606 -0.8029 3.4765 17 8 3.2875 1.1906 2.0750 18 6 0.8408 0.8989 3.0985 19 6 1.0754 1.7350 4.3581 20 6 -0.2501 2.3433 4.8207 21 6 -0.0192 3.1663 6.0618 22 1 0.9737 3.2471 6.4792 23 6 -1.0754 3.8162 6.6645 24 7 -2.2842 3.7182 6.1559 25 14 -0.7892 4.8358 8.2033 26 1 -0.4713 6.2344 7.8183 27 1 -2.0140 4.8196 9.0427 28 1 0.3454 4.2640 8.9721 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.5896 1.1581 -2.2947 35 1 3.7719 0.1377 -3.9002 36 1 4.6171 -1.1873 -5.7958 37 1 5.3851 -3.4991 -5.4368 38 1 5.3149 -4.4834 -3.1808 39 1 4.4773 -3.1557 -1.2838 40 1 2.1110 -1.6561 1.1949 41 1 0.4387 1.5353 2.3101 42 1 0.1316 0.1010 3.3185 43 1 1.4776 1.0990 5.1467 44 1 1.7845 2.5329 4.1378 45 1 -0.6528 2.9792 4.0324 46 1 -0.9589 1.5451 5.0411 47 1 -3.0273 4.1752 6.5802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122720459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:23 Heat of formation + Delta-G solvation = -122.529203 kcal Electronic energy + Delta-G solvation = -27401.870534 eV Core-core repulsion = 23482.796125 eV Total energy + Delta-G solvation = -3919.074409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.10714 -38.02008 -36.81432 -36.04745 -35.66105 -34.66270 -32.22341 -32.16835 -31.22589 -30.54637 -28.62568 -27.71532 -24.50814 -23.66602 -22.95809 -21.66770 -21.24468 -20.65305 -19.28120 -18.00342 -17.56392 -16.69412 -16.50290 -16.02114 -15.93346 -15.71825 -15.52021 -15.13009 -14.51213 -14.47486 -14.34013 -14.21554 -13.82594 -13.61414 -13.28682 -13.07541 -12.64962 -12.39892 -12.27345 -12.21956 -11.99839 -11.87942 -11.77443 -11.74198 -11.57756 -11.49336 -11.35638 -11.21511 -11.02105 -10.90779 -10.80960 -10.42426 -10.29702 -9.93364 -9.76268 -9.32651 -9.30307 -9.10945 -9.02400 -8.40022 -6.05112 -4.07887 0.52156 0.94543 1.01869 2.88037 3.31144 3.37152 3.37162 3.41493 3.98776 4.07951 4.20324 4.42462 4.43309 4.48471 4.57156 4.63494 4.68353 4.76190 4.78361 5.05702 5.09194 5.14672 5.17550 5.20212 5.23304 5.31376 5.36799 5.47127 5.55744 5.57137 5.62336 5.70578 5.86837 6.00893 6.07200 6.08116 6.13507 6.22837 6.29125 6.47329 6.60400 6.88447 6.93665 7.38952 7.57786 7.67916 7.93095 8.33897 8.98326 9.56739 11.06077 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.002058 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.263333 B =13601.451163 C =13820.397910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.146 3.854 3 H 0.102 0.898 4 C -0.147 4.147 5 C 0.144 3.856 6 H 0.111 0.889 7 O -0.542 6.542 8 C -0.113 4.113 9 C -0.113 4.113 10 C -0.117 4.117 11 C -0.124 4.124 12 C -0.117 4.117 13 C -0.112 4.112 14 N -1.120 6.120 15 S 2.597 3.403 16 O -0.966 6.966 17 O -0.952 6.952 18 C -0.611 4.611 19 C -0.106 4.106 20 C 0.031 3.969 21 C -0.526 4.526 22 H 0.058 0.942 23 C 0.057 3.943 24 N -0.895 5.895 25 Si 0.894 3.106 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.273 1.273 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.369 0.631 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.412 0.588 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 -14.043 -24.342 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.039 3.961 3 H 0.120 0.880 4 C -0.186 4.186 5 C 0.085 3.915 6 H 0.128 0.872 7 O -0.346 6.346 8 C -0.113 4.113 9 C -0.131 4.131 10 C -0.135 4.135 11 C -0.142 4.142 12 C -0.135 4.135 13 C -0.130 4.130 14 N -0.877 5.877 15 S 2.693 3.307 16 O -0.957 6.957 17 O -0.942 6.942 18 C -0.743 4.743 19 C -0.145 4.145 20 C -0.007 4.007 21 C -0.564 4.564 22 H 0.076 0.924 23 C -0.144 4.144 24 N -0.534 5.534 25 Si 0.722 3.278 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.197 1.197 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.216 0.784 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.245 0.755 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.079 -13.828 -23.401 28.990 hybrid contribution -1.034 0.157 0.102 1.051 sum 9.045 -13.671 -23.299 28.488 Atomic orbital electron populations 1.22492 0.95088 1.03091 1.03363 1.20803 0.93637 0.97481 0.84223 0.87994 1.22549 0.95551 1.02319 0.98181 1.20884 0.93313 0.81500 0.95825 0.87180 1.86797 1.77132 1.23912 1.46798 1.20670 0.99580 0.95435 0.95634 1.20893 1.00151 0.99837 0.92240 1.21130 0.98922 0.94586 0.98878 1.21184 1.00124 0.95642 0.97217 1.21168 0.99526 0.99954 0.92891 1.21038 0.98769 0.93822 0.99365 1.55840 1.84310 1.19489 1.28064 1.05416 0.77621 0.74635 0.73076 1.93572 1.80153 1.59288 1.62665 1.93610 1.61385 1.60124 1.79107 1.30667 1.21251 1.12176 1.10207 1.21497 1.03580 0.97712 0.91735 1.19057 0.89834 0.95632 0.96205 1.21264 0.94611 1.29913 1.10618 0.92365 1.25021 0.95138 0.96632 0.97628 1.69958 0.99503 1.43526 1.40457 0.86551 0.77699 0.80583 0.82951 1.20569 1.21193 1.19747 0.91227 0.91253 0.91769 0.90068 0.90010 0.78391 0.86101 0.85993 0.86121 0.85947 0.85808 0.75469 0.85441 0.85365 0.91649 0.91551 0.96141 0.96161 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.15 1.31 2.76 -67.93 -0.19 1.12 16 3 H 0.10 1.05 7.03 -51.93 -0.37 0.69 16 4 C -0.15 -1.03 4.47 -26.73 -0.12 -1.15 16 5 C 0.14 1.29 3.15 -27.88 -0.09 1.20 16 6 H 0.11 1.14 7.53 -51.92 -0.39 0.75 16 7 O -0.54 -5.63 12.59 -35.23 -0.44 -6.08 16 8 C -0.11 -0.94 5.00 -104.63 -0.52 -1.46 16 9 C -0.11 -0.83 9.33 -39.58 -0.37 -1.20 16 10 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 11 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 12 C -0.12 -0.84 10.05 -39.59 -0.40 -1.24 16 13 C -0.11 -0.89 9.68 -39.59 -0.38 -1.28 16 14 N -1.12 -11.47 4.73 -4.89 -0.02 -11.49 16 15 S 2.60 38.37 5.44 -107.50 -0.58 37.79 16 16 O -0.97 -17.12 18.08 -57.54 -1.04 -18.16 16 17 O -0.95 -17.11 17.39 -57.54 -1.00 -18.11 16 18 C -0.61 -9.40 5.22 37.16 0.19 -9.21 16 19 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 20 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 21 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 22 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 25 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.63 5.78 -51.93 -0.30 0.33 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.37 2.32 7.40 45.56 0.34 2.66 16 35 H 0.12 0.63 6.62 -52.48 -0.35 0.29 16 36 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.41 3.33 8.80 -34.47 -0.30 3.03 16 41 H 0.13 1.74 6.77 -51.93 -0.35 1.39 16 42 H 0.13 1.76 8.14 -51.93 -0.42 1.33 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -37.19 397.81 -11.15 -48.33 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.76 Total: 2.95 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: -3.01 Total: -32.06 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.71 Total: -37.34 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -2.48 Total: -42.34 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 38.37 SS G_CDS: -0.58 Total: 37.79 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.19 -11.15 -48.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122720459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.195 kcal (2) G-P(sol) polarization free energy of solvation -37.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds