Wall clock time and date at job start Wed Apr 1 2020 01:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53002 * 109.47645 * 174.99822 * 4 2 1 6 6 H 1.09009 * 109.46393 * 55.00173 * 5 4 2 7 7 O 1.42898 * 109.47110 * 295.00674 * 5 4 2 8 8 C 1.50697 * 109.47440 * 174.99944 * 5 4 2 9 9 C 1.38235 * 119.99660 * 84.72800 * 8 5 4 10 10 C 1.38239 * 119.99859 * 179.78653 * 9 8 5 11 11 C 1.38229 * 119.99925 * 0.44819 * 10 9 8 12 12 C 1.38238 * 120.00022 * 359.80783 * 11 10 9 13 13 C 1.38224 * 119.99919 * 359.97438 * 12 11 10 14 14 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 15 15 S 1.65595 * 120.00153 * 265.00098 * 14 2 1 16 16 O 1.42094 * 104.27936 * 181.07005 * 15 14 2 17 17 O 1.42106 * 104.27597 * 308.92873 * 15 14 2 18 18 C 1.81402 * 104.44891 * 64.99572 * 15 14 2 19 19 C 1.52998 * 109.46884 * 180.02562 * 18 15 14 20 20 C 1.52999 * 109.47127 * 180.02562 * 19 18 15 21 21 C 1.50703 * 109.47552 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99544 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00155 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99924 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46961 * 89.99945 * 25 23 21 27 27 H 1.48498 * 109.47257 * 209.99992 * 25 23 21 28 28 H 1.48498 * 109.47311 * 330.00113 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 33 33 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 34 34 H 0.96699 * 113.99565 * 299.99318 * 7 5 4 35 35 H 1.08004 * 120.00117 * 0.02562 * 9 8 5 36 36 H 1.07999 * 119.99746 * 180.27341 * 10 9 8 37 37 H 1.08007 * 119.99939 * 179.83201 * 11 10 9 38 38 H 1.08003 * 119.99931 * 180.02562 * 12 11 10 39 39 H 1.08004 * 120.00306 * 180.02562 * 13 12 11 40 40 H 0.96995 * 119.99699 * 84.99801 * 14 2 1 41 41 H 1.08998 * 109.47249 * 299.99880 * 18 15 14 42 42 H 1.08994 * 109.46963 * 60.00537 * 18 15 14 43 43 H 1.09006 * 109.47286 * 299.99492 * 19 18 15 44 44 H 1.09000 * 109.47597 * 59.99719 * 19 18 15 45 45 H 1.08998 * 109.47238 * 299.99922 * 20 19 18 46 46 H 1.09000 * 109.47279 * 59.99320 * 20 19 18 47 47 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 8 3.9386 0.7548 -1.4881 8 6 4.0774 -1.4260 -2.4747 9 6 4.1118 -0.8752 -3.7421 10 6 4.5861 -1.6191 -4.8064 11 6 5.0171 -2.9169 -4.6048 12 6 4.9777 -3.4695 -3.3383 13 6 4.5077 -2.7241 -2.2734 14 7 2.0184 -0.6906 1.1962 15 16 2.4122 0.1771 2.5505 16 8 2.8606 -0.8029 3.4765 17 8 3.2875 1.1906 2.0750 18 6 0.8408 0.8989 3.0985 19 6 1.0754 1.7350 4.3581 20 6 -0.2501 2.3433 4.8207 21 6 -0.0192 3.1663 6.0618 22 1 0.9737 3.2471 6.4792 23 6 -1.0754 3.8162 6.6645 24 7 -2.2842 3.7182 6.1559 25 14 -0.7892 4.8358 8.2033 26 1 -0.4713 6.2344 7.8183 27 1 -2.0140 4.8196 9.0427 28 1 0.3454 4.2640 8.9721 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.5896 1.1581 -2.2947 35 1 3.7719 0.1377 -3.9002 36 1 4.6171 -1.1873 -5.7958 37 1 5.3851 -3.4991 -5.4368 38 1 5.3149 -4.4834 -3.1808 39 1 4.4773 -3.1557 -1.2838 40 1 2.1110 -1.6561 1.1949 41 1 0.4387 1.5353 2.3101 42 1 0.1316 0.1010 3.3185 43 1 1.4776 1.0990 5.1467 44 1 1.7845 2.5329 4.1378 45 1 -0.6528 2.9792 4.0324 46 1 -0.9589 1.5451 5.0411 47 1 -3.0273 4.1752 6.5802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122720459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:21 Heat of formation + Delta-G solvation = -149.726144 kcal Electronic energy + Delta-G solvation = -27403.049882 eV Core-core repulsion = 23482.796125 eV Total energy + Delta-G solvation = -3920.253757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.67501 -38.69923 -38.09979 -37.03332 -36.79763 -36.46804 -34.17588 -32.82292 -31.73169 -31.30868 -29.76603 -29.03497 -25.66558 -25.01920 -23.47030 -22.50677 -22.25497 -21.85624 -20.44180 -18.82868 -18.64893 -18.43741 -17.41884 -17.17701 -16.81539 -16.60149 -16.50693 -16.18582 -16.11863 -15.62684 -15.11298 -14.95161 -14.54372 -14.44546 -14.18959 -14.17570 -13.96288 -13.64205 -13.47306 -13.27050 -13.16650 -13.10959 -12.98140 -12.81336 -12.75601 -12.65878 -12.53308 -12.31963 -12.16731 -12.12129 -11.88974 -11.74828 -11.70612 -11.37739 -11.14346 -10.94701 -10.57594 -10.40829 -9.81943 -9.60827 -8.22936 -6.33715 -0.70803 0.41427 0.50238 1.39873 1.40564 1.51990 1.81320 2.39591 2.77626 2.84686 3.10440 3.25904 3.45940 3.61282 3.74599 3.90435 3.94909 3.97955 4.05273 4.17809 4.18669 4.30167 4.37906 4.45198 4.47801 4.58796 4.65070 4.66373 4.70476 4.89445 4.93196 5.00517 5.05164 5.06267 5.09932 5.17487 5.33877 5.42716 5.45697 5.56829 5.62969 5.63218 5.67642 5.79201 6.10995 6.17440 6.19844 6.81528 6.86815 7.35376 8.88399 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.002058 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.263333 B =13601.451163 C =13820.397910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.137 4.137 5 C 0.143 3.857 6 H 0.090 0.910 7 O -0.567 6.567 8 C -0.124 4.124 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.131 4.131 12 C -0.127 4.127 13 C -0.129 4.129 14 N -1.103 6.103 15 S 2.624 3.376 16 O -0.996 6.996 17 O -0.985 6.985 18 C -0.611 4.611 19 C -0.107 4.107 20 C 0.033 3.967 21 C -0.553 4.553 22 H 0.059 0.941 23 C 0.003 3.997 24 N -0.928 5.928 25 Si 0.963 3.037 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.266 1.266 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.384 0.616 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.425 0.575 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.004 0.996 46 H 0.003 0.997 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -14.596 -25.751 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.034 3.966 3 H 0.106 0.894 4 C -0.176 4.176 5 C 0.084 3.916 6 H 0.108 0.892 7 O -0.375 6.375 8 C -0.125 4.125 9 C -0.140 4.140 10 C -0.143 4.143 11 C -0.149 4.149 12 C -0.145 4.145 13 C -0.147 4.147 14 N -0.865 5.865 15 S 2.719 3.281 16 O -0.986 6.986 17 O -0.974 6.974 18 C -0.741 4.741 19 C -0.146 4.146 20 C -0.006 4.006 21 C -0.591 4.591 22 H 0.077 0.923 23 C -0.195 4.195 24 N -0.568 5.568 25 Si 0.787 3.213 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.190 1.190 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.234 0.766 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.261 0.739 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.061 -14.388 -24.815 30.398 hybrid contribution -1.022 0.297 0.434 1.150 sum 9.039 -14.091 -24.381 29.575 Atomic orbital electron populations 1.22503 0.93879 1.04057 1.03625 1.20996 0.94543 0.96936 0.84167 0.89411 1.22501 0.94193 1.03109 0.97808 1.20833 0.94413 0.80979 0.95356 0.89245 1.86747 1.77808 1.24809 1.48110 1.20666 1.00425 0.95565 0.95815 1.21159 1.00075 1.00754 0.91983 1.21444 0.98446 0.94692 0.99702 1.21506 0.99711 0.95982 0.97687 1.21423 0.99416 1.00721 0.92958 1.21236 0.99317 0.94143 1.00005 1.55405 1.84080 1.20008 1.26980 1.04343 0.76749 0.73836 0.73158 1.93525 1.80738 1.59964 1.64418 1.93570 1.62512 1.61581 1.79773 1.30632 1.22613 1.12468 1.08407 1.21312 1.00824 0.98324 0.94108 1.18948 0.91898 0.94725 0.95002 1.21745 0.94852 1.30629 1.11912 0.92296 1.25926 0.94862 0.97807 1.00950 1.70067 1.00331 1.44428 1.41978 0.85482 0.77906 0.78983 0.78924 1.19706 1.20457 1.19023 0.89505 0.92512 0.90458 0.88670 0.87801 0.76608 0.84398 0.84098 0.84269 0.84496 0.85411 0.73857 0.83684 0.83525 0.91783 0.91691 0.97757 0.97829 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.48 71.98 0.68 -1.79 16 2 C 0.14 2.29 2.76 44.99 0.12 2.41 16 3 H 0.09 1.73 7.03 -2.39 -0.02 1.72 16 4 C -0.14 -1.65 4.47 30.59 0.14 -1.51 16 5 C 0.14 2.45 3.15 29.85 0.09 2.54 16 6 H 0.09 1.85 7.53 -2.38 -0.02 1.83 16 7 O -0.57 -11.46 12.59 -148.98 -1.88 -13.33 16 8 C -0.12 -1.94 5.00 -19.87 -0.10 -2.04 16 9 C -0.12 -1.58 9.33 22.27 0.21 -1.38 16 10 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 11 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 12 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 13 C -0.13 -1.96 9.68 22.27 0.22 -1.75 16 14 N -1.10 -21.38 4.73 -169.39 -0.80 -22.19 16 15 S 2.62 76.87 5.44 -56.49 -0.31 76.56 16 16 O -1.00 -35.15 18.08 -127.65 -2.31 -37.46 16 17 O -0.98 -35.59 17.39 -127.65 -2.22 -37.81 16 18 C -0.61 -18.54 5.22 71.98 0.38 -18.17 16 19 C -0.11 -4.41 5.16 30.59 0.16 -4.25 16 20 C 0.03 1.69 4.97 29.85 0.15 1.84 16 21 C -0.55 -31.78 9.11 25.60 0.23 -31.54 16 22 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 23 C 0.00 0.16 5.46 84.66 0.46 0.63 16 24 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 25 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.93 5.78 -2.39 -0.01 0.91 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.83 8.14 -2.38 -0.02 0.82 16 34 H 0.38 4.41 7.40 -74.06 -0.55 3.86 16 35 H 0.14 1.17 6.62 -2.91 -0.02 1.15 16 36 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 38 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.42 6.27 8.80 -96.75 -0.85 5.42 16 41 H 0.15 3.87 6.77 -2.39 -0.02 3.85 16 42 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 43 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 44 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.26 14.89 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -80.38 397.81 -2.21 -82.60 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.42 Total: 19.53 kcal Atomic # 6 Polarization: -62.45 SS G_CDS: 3.41 Total: -59.04 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -0.52 Total: -77.56 kcal Atomic # 8 Polarization: -82.20 SS G_CDS: -6.40 Total: -88.60 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 76.87 SS G_CDS: -0.31 Total: 76.56 kcal Total: -80.38 -2.21 -82.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122720459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.130 kcal (2) G-P(sol) polarization free energy of solvation -80.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds