Wall clock time and date at job start Wed Apr 1 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47144 * 119.99764 * 2 1 3 5 5 H 1.08002 * 119.99821 * 114.49102 * 4 2 1 6 6 C 1.37869 * 120.00229 * 294.49202 * 4 2 1 7 7 N 1.31515 * 120.00095 * 164.52587 * 6 4 2 8 8 Si 1.86802 * 120.00055 * 344.79770 * 6 4 2 9 9 H 1.48500 * 109.47226 * 269.72753 * 8 6 4 10 10 H 1.48504 * 109.46735 * 29.72658 * 8 6 4 11 11 H 1.48497 * 109.47182 * 149.72492 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46508 * 119.99926 * 299.99455 * 12 2 1 14 14 S 1.65596 * 120.00083 * 120.00020 * 12 2 1 15 15 O 1.42102 * 104.27707 * 206.07098 * 14 12 2 16 16 O 1.42101 * 104.27468 * 333.92541 * 14 12 2 17 17 C 1.81402 * 104.45120 * 89.99644 * 14 12 2 18 18 C 1.52999 * 109.46982 * 180.02562 * 17 14 12 19 19 C 1.53002 * 109.46889 * 179.97438 * 18 17 14 20 20 O 1.42901 * 109.47125 * 179.97438 * 19 18 17 21 21 C 1.42901 * 114.00309 * 180.02562 * 20 19 18 22 22 C 1.50693 * 109.47408 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.00056 * 269.72541 * 22 21 20 24 24 C 1.38231 * 119.99766 * 179.76656 * 23 22 21 25 25 C 1.38229 * 120.00363 * 0.50394 * 24 23 22 26 26 C 1.38235 * 120.00109 * 359.74917 * 25 24 23 27 27 C 1.38234 * 119.99873 * 89.99437 * 22 21 20 28 28 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 29 29 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 30 30 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 31 31 H 0.96993 * 120.00377 * 355.18434 * 7 6 4 32 32 H 1.08998 * 109.46944 * 90.00357 * 13 12 2 33 33 H 1.08996 * 109.46907 * 209.99921 * 13 12 2 34 34 H 1.08998 * 109.46952 * 330.00279 * 13 12 2 35 35 H 1.09006 * 109.46779 * 300.00106 * 17 14 12 36 36 H 1.08995 * 109.46674 * 60.00020 * 17 14 12 37 37 H 1.08999 * 109.47107 * 299.99937 * 18 17 14 38 38 H 1.09007 * 109.47361 * 59.99988 * 18 17 14 39 39 H 1.08999 * 109.47400 * 300.00009 * 19 18 17 40 40 H 1.09002 * 109.46632 * 60.00329 * 19 18 17 41 41 H 1.09002 * 109.46611 * 300.00148 * 21 20 19 42 42 H 1.09007 * 109.47016 * 59.99442 * 21 20 19 43 43 H 1.07999 * 119.99910 * 359.97438 * 23 22 21 44 44 H 1.07998 * 119.99735 * 180.22762 * 24 23 22 45 45 H 1.08000 * 120.00266 * 179.72778 * 25 24 23 46 46 H 1.07996 * 120.00590 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.00054 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9703 0.1141 -2.2863 15 8 2.7431 -0.5613 -3.5157 16 8 2.6121 1.4795 -2.1235 17 6 4.6649 -0.1729 -1.7060 18 6 5.6503 0.5296 -2.6420 19 6 7.0796 0.2880 -2.1522 20 8 8.0001 0.9437 -3.0267 21 6 9.3706 0.7795 -2.6570 22 6 10.2475 1.5086 -3.6421 23 6 10.7179 0.8540 -4.7652 24 6 11.5182 1.5243 -5.6713 25 6 11.8568 2.8459 -5.4491 26 6 11.3907 3.4990 -4.3234 27 6 10.5860 2.8303 -3.4199 28 1 -0.3634 0.6073 -0.8290 29 1 -0.3633 -1.0217 -0.1115 30 1 -0.3633 0.4141 0.9405 31 1 2.1679 -1.8619 3.4633 32 1 0.7376 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 4.7757 0.2249 -0.6972 36 1 4.8700 -1.2434 -1.6990 37 1 5.5396 0.1321 -3.6509 38 1 5.4450 1.6001 -2.6487 39 1 7.1901 0.6858 -1.1434 40 1 7.2851 -0.7824 -2.1453 41 1 9.5290 1.1876 -1.6588 42 1 9.6233 -0.2808 -2.6604 43 1 10.4573 -0.1800 -4.9364 44 1 11.8827 1.0140 -6.5506 45 1 12.4857 3.3683 -6.1548 46 1 11.6555 4.5315 -4.1496 47 1 10.2224 3.3402 -2.5401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289131506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:23 Heat of formation + Delta-G solvation = -95.908875 kcal Electronic energy + Delta-G solvation = -27157.690077 eV Core-core repulsion = 23239.770012 eV Total energy + Delta-G solvation = -3917.920065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.67079 -38.01324 -36.74017 -36.40297 -35.48927 -34.18881 -32.65028 -32.00153 -31.20496 -29.87980 -27.26291 -25.82826 -25.49451 -24.69106 -22.88853 -22.10304 -21.52135 -20.56380 -18.29976 -17.61557 -17.25417 -17.08106 -16.81729 -16.60370 -15.84342 -15.74905 -15.60584 -15.18375 -14.40235 -14.34989 -13.97710 -13.71726 -13.67043 -13.28216 -13.10882 -12.93945 -12.80567 -12.46977 -12.43752 -12.11042 -12.01821 -11.81405 -11.68138 -11.64756 -11.55465 -11.39356 -11.33716 -11.20029 -11.11933 -10.76858 -10.59041 -10.35276 -10.10368 -9.83467 -9.63305 -9.21959 -9.18372 -9.13908 -8.49038 -8.10978 -6.55867 -4.23567 0.68796 0.95895 1.10307 3.12127 3.27600 3.36701 3.42093 3.54861 3.76543 4.25193 4.40279 4.49452 4.50762 4.52635 4.69662 4.73915 4.80955 4.81262 4.95439 5.03177 5.08585 5.13028 5.23388 5.26438 5.34411 5.35432 5.48135 5.61922 5.65868 5.73185 5.81844 5.94443 6.05452 6.13440 6.14909 6.19521 6.29092 6.36795 6.48356 6.55221 6.67150 6.67406 6.94511 6.96441 7.28012 7.41854 7.88872 8.24573 8.76710 9.45495 10.80276 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.002295 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.608277 B =12196.701615 C =13011.567054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.242 3.758 3 H 0.052 0.948 4 C -0.615 4.615 5 H 0.065 0.935 6 C 0.038 3.962 7 N -0.900 5.900 8 Si 1.028 2.972 9 H -0.283 1.283 10 H -0.265 1.265 11 H -0.283 1.283 12 N -0.979 5.979 13 C 0.106 3.894 14 S 2.609 3.391 15 O -0.970 6.970 16 O -0.957 6.957 17 C -0.634 4.634 18 C -0.108 4.108 19 C 0.070 3.930 20 O -0.383 6.383 21 C 0.101 3.899 22 C -0.090 4.090 23 C -0.099 4.099 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.098 4.098 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.269 0.731 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.501 2.669 -13.743 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.137 3.863 3 H 0.070 0.930 4 C -0.654 4.654 5 H 0.083 0.917 6 C -0.168 4.168 7 N -0.533 5.533 8 Si 0.855 3.145 9 H -0.209 1.209 10 H -0.190 1.190 11 H -0.209 1.209 12 N -0.818 5.818 13 C -0.040 4.040 14 S 2.702 3.298 15 O -0.960 6.960 16 O -0.948 6.948 17 C -0.762 4.762 18 C -0.147 4.147 19 C -0.008 4.008 20 O -0.303 6.303 21 C 0.025 3.975 22 C -0.090 4.090 23 C -0.117 4.117 24 C -0.142 4.142 25 C -0.134 4.134 26 C -0.142 4.142 27 C -0.116 4.116 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.769 4.408 -13.517 21.232 hybrid contribution 0.978 -1.829 -0.221 2.085 sum 16.746 2.580 -13.737 21.813 Atomic orbital electron populations 1.22381 0.98279 1.00394 0.99935 1.19072 0.91587 0.93057 0.82554 0.93007 1.22266 1.40753 1.11410 0.90936 0.91669 1.25670 0.94042 1.05255 0.91880 1.70821 1.43458 1.08265 1.30794 0.84332 0.77821 0.75671 0.76648 1.20901 1.18982 1.20862 1.57222 1.63635 1.21551 1.39344 1.21227 0.99320 0.81566 1.01910 1.04899 0.76512 0.74370 0.74038 1.93538 1.84253 1.75654 1.42582 1.93563 1.81090 1.33801 1.86297 1.30708 1.23781 1.10237 1.11438 1.21150 0.92821 1.01912 0.98812 1.22479 0.88329 0.96599 0.93367 1.87941 1.14623 1.75084 1.52609 1.21312 0.81359 0.98744 0.96078 1.19636 0.98206 0.94685 0.96439 1.21094 0.96997 1.00173 0.93454 1.21155 0.98750 0.94970 0.99371 1.21208 0.99777 0.94935 0.97499 1.21172 0.98232 1.00032 0.94753 1.21118 0.97229 0.93697 0.99594 0.95207 0.93241 0.92295 0.92075 0.93563 0.92915 0.90139 0.84093 0.85292 0.89839 0.89555 0.92407 0.92755 0.92213 0.92329 0.85891 0.85898 0.86020 0.85850 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.57 37.16 0.32 -2.92 16 2 C 0.24 5.48 2.12 -69.08 -0.15 5.34 16 3 H 0.05 1.22 5.50 -51.93 -0.29 0.93 16 4 C -0.61 -15.58 8.37 -34.45 -0.29 -15.86 16 5 H 0.07 1.73 7.38 -52.49 -0.39 1.34 16 6 C 0.04 1.02 5.33 -17.82 -0.09 0.93 16 7 N -0.90 -25.88 13.70 55.43 0.76 -25.12 16 8 Si 1.03 23.84 26.17 -169.99 -4.45 19.39 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.26 -5.73 5.53 56.52 0.31 -5.42 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.98 -19.20 2.99 -115.85 -0.35 -19.55 16 13 C 0.11 1.82 9.07 59.85 0.54 2.36 16 14 S 2.61 46.97 5.37 -107.50 -0.58 46.40 16 15 O -0.97 -18.58 17.09 -57.54 -0.98 -19.56 16 16 O -0.96 -20.00 16.57 -57.54 -0.95 -20.95 16 17 C -0.63 -9.01 6.18 37.16 0.23 -8.78 16 18 C -0.11 -1.42 5.59 -26.73 -0.15 -1.57 16 19 C 0.07 0.82 5.94 37.16 0.22 1.04 16 20 O -0.38 -4.79 10.33 -35.23 -0.36 -5.16 16 21 C 0.10 1.01 6.06 36.00 0.22 1.22 16 22 C -0.09 -0.90 5.51 -104.63 -0.58 -1.48 16 23 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 24 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 25 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 27 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 30 H 0.06 1.28 5.06 -51.93 -0.26 1.02 16 31 H 0.27 7.67 8.73 -40.82 -0.36 7.31 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 34 H 0.08 1.45 6.92 -51.93 -0.36 1.09 16 35 H 0.14 2.03 8.14 -51.92 -0.42 1.61 16 36 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 42 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 46 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -32.49 394.67 -10.32 -42.81 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.66 Total: 2.28 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -1.69 Total: -26.47 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.41 Total: -44.67 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -2.30 Total: -45.67 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.45 Total: 19.39 kcal Atomic # 16 Polarization: 46.97 SS G_CDS: -0.58 Total: 46.40 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.49 -10.32 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289131506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.104 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds