Wall clock time and date at job start Wed Apr 1 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47144 * 119.99764 * 2 1 3 5 5 H 1.08002 * 119.99821 * 114.49102 * 4 2 1 6 6 C 1.37869 * 120.00229 * 294.49202 * 4 2 1 7 7 N 1.31515 * 120.00095 * 164.52587 * 6 4 2 8 8 Si 1.86802 * 120.00055 * 344.79770 * 6 4 2 9 9 H 1.48500 * 109.47226 * 269.72753 * 8 6 4 10 10 H 1.48504 * 109.46735 * 29.72658 * 8 6 4 11 11 H 1.48497 * 109.47182 * 149.72492 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46508 * 119.99926 * 299.99455 * 12 2 1 14 14 S 1.65596 * 120.00083 * 120.00020 * 12 2 1 15 15 O 1.42102 * 104.27707 * 206.07098 * 14 12 2 16 16 O 1.42101 * 104.27468 * 333.92541 * 14 12 2 17 17 C 1.81402 * 104.45120 * 89.99644 * 14 12 2 18 18 C 1.52999 * 109.46982 * 180.02562 * 17 14 12 19 19 C 1.53002 * 109.46889 * 179.97438 * 18 17 14 20 20 O 1.42901 * 109.47125 * 179.97438 * 19 18 17 21 21 C 1.42901 * 114.00309 * 180.02562 * 20 19 18 22 22 C 1.50693 * 109.47408 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.00056 * 269.72541 * 22 21 20 24 24 C 1.38231 * 119.99766 * 179.76656 * 23 22 21 25 25 C 1.38229 * 120.00363 * 0.50394 * 24 23 22 26 26 C 1.38235 * 120.00109 * 359.74917 * 25 24 23 27 27 C 1.38234 * 119.99873 * 89.99437 * 22 21 20 28 28 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 29 29 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 30 30 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 31 31 H 0.96993 * 120.00377 * 355.18434 * 7 6 4 32 32 H 1.08998 * 109.46944 * 90.00357 * 13 12 2 33 33 H 1.08996 * 109.46907 * 209.99921 * 13 12 2 34 34 H 1.08998 * 109.46952 * 330.00279 * 13 12 2 35 35 H 1.09006 * 109.46779 * 300.00106 * 17 14 12 36 36 H 1.08995 * 109.46674 * 60.00020 * 17 14 12 37 37 H 1.08999 * 109.47107 * 299.99937 * 18 17 14 38 38 H 1.09007 * 109.47361 * 59.99988 * 18 17 14 39 39 H 1.08999 * 109.47400 * 300.00009 * 19 18 17 40 40 H 1.09002 * 109.46632 * 60.00329 * 19 18 17 41 41 H 1.09002 * 109.46611 * 300.00148 * 21 20 19 42 42 H 1.09007 * 109.47016 * 59.99442 * 21 20 19 43 43 H 1.07999 * 119.99910 * 359.97438 * 23 22 21 44 44 H 1.07998 * 119.99735 * 180.22762 * 24 23 22 45 45 H 1.08000 * 120.00266 * 179.72778 * 25 24 23 46 46 H 1.07996 * 120.00590 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.00054 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9703 0.1141 -2.2863 15 8 2.7431 -0.5613 -3.5157 16 8 2.6121 1.4795 -2.1235 17 6 4.6649 -0.1729 -1.7060 18 6 5.6503 0.5296 -2.6420 19 6 7.0796 0.2880 -2.1522 20 8 8.0001 0.9437 -3.0267 21 6 9.3706 0.7795 -2.6570 22 6 10.2475 1.5086 -3.6421 23 6 10.7179 0.8540 -4.7652 24 6 11.5182 1.5243 -5.6713 25 6 11.8568 2.8459 -5.4491 26 6 11.3907 3.4990 -4.3234 27 6 10.5860 2.8303 -3.4199 28 1 -0.3634 0.6073 -0.8290 29 1 -0.3633 -1.0217 -0.1115 30 1 -0.3633 0.4141 0.9405 31 1 2.1679 -1.8619 3.4633 32 1 0.7376 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 4.7757 0.2249 -0.6972 36 1 4.8700 -1.2434 -1.6990 37 1 5.5396 0.1321 -3.6509 38 1 5.4450 1.6001 -2.6487 39 1 7.1901 0.6858 -1.1434 40 1 7.2851 -0.7824 -2.1453 41 1 9.5290 1.1876 -1.6588 42 1 9.6233 -0.2808 -2.6604 43 1 10.4573 -0.1800 -4.9364 44 1 11.8827 1.0140 -6.5506 45 1 12.4857 3.3683 -6.1548 46 1 11.6555 4.5315 -4.1496 47 1 10.2224 3.3402 -2.5401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289131506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:21 Heat of formation + Delta-G solvation = -116.770097 kcal Electronic energy + Delta-G solvation = -27158.594688 eV Core-core repulsion = 23239.770012 eV Total energy + Delta-G solvation = -3918.824676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.32886 -38.83963 -38.28466 -38.02078 -36.99864 -35.20065 -34.59607 -32.71726 -31.81720 -31.61430 -28.18906 -27.25423 -26.60232 -26.38427 -23.50702 -23.13794 -22.35814 -22.12563 -19.81618 -19.48890 -18.59259 -18.05363 -17.77811 -17.57785 -17.05462 -16.92059 -16.35156 -16.19136 -15.86231 -15.47828 -15.14146 -15.00051 -14.89663 -14.56263 -14.29221 -13.93978 -13.86139 -13.65185 -13.51148 -13.48999 -13.39218 -13.36809 -13.22573 -13.16896 -12.96605 -12.57282 -12.45769 -12.21300 -12.19520 -11.90054 -11.89758 -11.88598 -11.68408 -11.40590 -11.07215 -10.66906 -10.48266 -9.85082 -9.80668 -9.74889 -8.64575 -6.32809 -0.71142 0.30676 0.47185 1.53047 1.54308 1.69825 1.75712 2.45863 2.50157 2.84978 3.08126 3.09667 3.16907 3.63896 3.71900 3.79605 3.88492 3.98273 4.10300 4.14546 4.20799 4.27403 4.31924 4.39143 4.45209 4.50780 4.57182 4.63841 4.67178 4.73425 4.76524 4.82532 4.85368 4.88571 4.94791 5.04988 5.10622 5.13002 5.30567 5.52237 5.53658 5.58518 5.63765 5.76029 5.99149 6.06316 6.12263 6.13142 6.68087 7.41935 8.69861 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.002295 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.608277 B =12196.701615 C =13011.567054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.241 3.759 3 H 0.048 0.952 4 C -0.598 4.598 5 H 0.047 0.953 6 C -0.007 4.007 7 N -0.935 5.935 8 Si 1.055 2.945 9 H -0.273 1.273 10 H -0.242 1.242 11 H -0.285 1.285 12 N -0.990 5.990 13 C 0.100 3.900 14 S 2.611 3.389 15 O -0.983 6.983 16 O -0.990 6.990 17 C -0.611 4.611 18 C -0.115 4.115 19 C 0.069 3.931 20 O -0.403 6.403 21 C 0.098 3.902 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.116 4.116 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.258 0.742 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.132 0.868 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.699 3.070 -15.214 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.135 3.865 3 H 0.065 0.935 4 C -0.637 4.637 5 H 0.065 0.935 6 C -0.207 4.207 7 N -0.571 5.571 8 Si 0.877 3.123 9 H -0.198 1.198 10 H -0.166 1.166 11 H -0.211 1.211 12 N -0.827 5.827 13 C -0.046 4.046 14 S 2.708 3.292 15 O -0.974 6.974 16 O -0.981 6.981 17 C -0.743 4.743 18 C -0.154 4.154 19 C -0.008 4.008 20 O -0.323 6.323 21 C 0.022 3.978 22 C -0.111 4.111 23 C -0.131 4.131 24 C -0.149 4.149 25 C -0.139 4.139 26 C -0.150 4.150 27 C -0.134 4.134 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.149 0.851 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.925 4.802 -15.023 23.134 hybrid contribution 0.727 -2.006 0.125 2.137 sum 17.652 2.796 -14.898 23.267 Atomic orbital electron populations 1.22361 0.97426 1.01162 1.00297 1.18882 0.92343 0.92676 0.82623 0.93463 1.22390 1.39048 1.10338 0.91953 0.93519 1.26700 0.94154 1.07809 0.92050 1.70927 1.46460 1.07897 1.31822 0.84002 0.78245 0.72601 0.77438 1.19834 1.16592 1.21102 1.57176 1.64928 1.22359 1.38246 1.21376 1.00948 0.80491 1.01740 1.04702 0.77636 0.73323 0.73509 1.93517 1.85191 1.75549 1.43124 1.93517 1.82470 1.35540 1.86574 1.30437 1.20196 1.12231 1.11393 1.21239 0.93607 1.01630 0.98924 1.22472 0.87301 0.97666 0.93367 1.87903 1.15826 1.75467 1.53105 1.21458 0.80131 0.99695 0.96487 1.19811 0.98915 0.95218 0.97124 1.21324 0.97417 1.00821 0.93579 1.21480 0.98286 0.95321 0.99805 1.21564 0.99605 0.95022 0.97675 1.21475 0.97837 1.00994 0.94683 1.21325 0.97916 0.93862 1.00287 0.93804 0.92617 0.92738 0.93306 0.92701 0.90203 0.91435 0.83920 0.82711 0.89175 0.89978 0.91880 0.91050 0.91488 0.91016 0.85053 0.83852 0.83694 0.84046 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.37 8.57 71.98 0.62 -5.75 16 2 C 0.24 10.63 2.12 44.24 0.09 10.73 16 3 H 0.05 2.16 5.50 -2.39 -0.01 2.14 16 4 C -0.60 -30.14 8.37 25.60 0.21 -29.93 16 5 H 0.05 2.49 7.38 -2.91 -0.02 2.46 16 6 C -0.01 -0.36 5.33 84.65 0.45 0.09 16 7 N -0.94 -54.50 13.70 21.44 0.29 -54.21 16 8 Si 1.05 47.32 26.17 68.60 1.80 49.12 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.24 -9.90 5.53 99.48 0.55 -9.35 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 N -0.99 -37.46 2.99 -520.43 -1.56 -39.02 16 13 C 0.10 3.28 9.07 127.77 1.16 4.44 16 14 S 2.61 90.18 5.37 -56.49 -0.30 89.88 16 15 O -0.98 -36.01 17.09 -127.65 -2.18 -38.19 16 16 O -0.99 -40.53 16.57 -127.65 -2.12 -42.64 16 17 C -0.61 -16.02 6.18 71.98 0.44 -15.57 16 18 C -0.11 -2.80 5.59 30.59 0.17 -2.63 16 19 C 0.07 1.48 5.94 71.98 0.43 1.91 16 20 O -0.40 -9.53 10.33 -148.98 -1.54 -11.07 16 21 C 0.10 1.83 6.06 71.23 0.43 2.26 16 22 C -0.11 -2.14 5.51 -19.87 -0.11 -2.25 16 23 C -0.11 -1.96 9.70 22.27 0.22 -1.75 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 25 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.12 -2.10 9.70 22.27 0.22 -1.89 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 2.20 7.47 -2.38 -0.02 2.18 16 30 H 0.05 2.28 5.06 -2.39 -0.01 2.27 16 31 H 0.26 15.06 8.73 -92.71 -0.81 14.25 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 34 H 0.07 2.38 6.92 -2.39 -0.02 2.36 16 35 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 36 H 0.15 3.29 8.14 -2.39 -0.02 3.28 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 42 H 0.07 1.11 8.08 -2.38 -0.02 1.09 16 43 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 44 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 46 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 47 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -69.07 394.67 0.14 -68.93 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.74 Total: 22.47 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 5.00 Total: -45.26 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -1.26 Total: -93.23 kcal Atomic # 8 Polarization: -86.07 SS G_CDS: -5.83 Total: -91.90 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.80 Total: 49.12 kcal Atomic # 16 Polarization: 90.18 SS G_CDS: -0.30 Total: 89.88 kcal Total: -69.07 0.14 -68.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289131506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.843 kcal (2) G-P(sol) polarization free energy of solvation -69.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds