Wall clock time and date at job start Wed Apr 1 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99808 * 2 1 4 4 H 1.09005 * 109.46816 * 29.99530 * 3 2 1 5 5 C 1.52996 * 109.47142 * 270.00015 * 3 2 1 6 6 C 1.50699 * 109.47300 * 64.99540 * 5 3 2 7 7 C 1.38234 * 119.99852 * 90.00531 * 6 5 3 8 8 C 1.38237 * 120.00211 * 179.97438 * 7 6 5 9 9 C 1.38240 * 119.99736 * 359.97438 * 8 7 6 10 10 C 1.38231 * 119.99732 * 0.27275 * 9 8 7 11 11 C 1.38232 * 120.00620 * 359.51659 * 10 9 8 12 12 C 1.52991 * 109.47111 * 149.99788 * 3 2 1 13 13 S 1.81406 * 109.47068 * 299.99769 * 12 3 2 14 14 O 1.42098 * 110.54429 * 291.62719 * 13 12 3 15 15 O 1.42098 * 110.54181 * 68.37834 * 13 12 3 16 16 N 1.65604 * 104.44841 * 180.02562 * 13 12 3 17 17 C 1.46508 * 119.99938 * 270.00238 * 16 13 12 18 18 C 1.46496 * 120.00346 * 90.00028 * 16 13 12 19 19 H 1.09006 * 109.47046 * 0.02562 * 18 16 13 20 20 C 1.52998 * 109.47463 * 240.00300 * 18 16 13 21 21 C 1.50703 * 109.47197 * 119.99690 * 18 16 13 22 22 H 1.07996 * 119.99776 * 35.00298 * 21 18 16 23 23 C 1.37873 * 120.00163 * 215.00378 * 21 18 16 24 24 N 1.31514 * 119.99896 * 184.91585 * 23 21 18 25 25 Si 1.86807 * 120.00119 * 4.91747 * 23 21 18 26 26 H 1.48497 * 109.47183 * 84.83118 * 25 23 21 27 27 H 1.48493 * 109.46982 * 204.83825 * 25 23 21 28 28 H 1.48501 * 109.46923 * 324.83638 * 25 23 21 29 29 H 1.09006 * 109.46785 * 60.00360 * 1 2 3 30 30 H 1.09005 * 109.46736 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47398 * 300.00371 * 1 2 3 32 32 H 1.09004 * 109.46847 * 305.00206 * 5 3 2 33 33 H 1.08991 * 109.47260 * 185.00014 * 5 3 2 34 34 H 1.08003 * 120.00384 * 359.97141 * 7 6 5 35 35 H 1.07997 * 120.00164 * 179.97438 * 8 7 6 36 36 H 1.08003 * 119.99893 * 180.02562 * 9 8 7 37 37 H 1.08007 * 119.99350 * 179.72265 * 10 9 8 38 38 H 1.07998 * 120.00400 * 180.27322 * 11 10 9 39 39 H 1.09000 * 109.47581 * 59.99685 * 12 3 2 40 40 H 1.09009 * 109.47363 * 180.02562 * 12 3 2 41 41 H 1.08998 * 109.47024 * 89.99936 * 17 16 13 42 42 H 1.09002 * 109.46855 * 210.00232 * 17 16 13 43 43 H 1.08997 * 109.47066 * 330.00058 * 17 16 13 44 44 H 1.08998 * 109.47434 * 54.97242 * 20 18 16 45 45 H 1.09003 * 109.47155 * 174.97965 * 20 18 16 46 46 H 1.09001 * 109.46588 * 294.97458 * 20 18 16 47 47 H 0.97000 * 119.99687 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 0.8791 1.9309 -2.1163 7 6 0.2190 3.1443 -2.0638 8 6 -1.0085 3.2907 -2.6823 9 6 -1.5757 2.2238 -3.3538 10 6 -0.9180 1.0090 -3.4020 11 6 0.3115 0.8637 -2.7872 12 6 3.3588 1.2634 0.7213 13 16 3.1128 0.7111 2.4316 14 8 2.4089 1.6950 3.1770 15 8 2.7175 -0.6535 2.4629 16 7 4.6328 0.7117 3.0887 17 6 5.4640 -0.4924 3.0132 18 6 5.1465 1.9163 3.7454 19 1 4.3925 2.7024 3.7039 20 6 6.4141 2.3865 3.0293 21 6 5.4684 1.6053 5.1845 22 1 5.8561 0.6339 5.4533 23 6 5.2680 2.5611 6.1578 24 7 5.6385 2.3250 7.3974 25 14 4.4700 4.1913 5.7158 26 1 2.9927 4.0450 5.7511 27 1 4.8883 5.2282 6.6930 28 1 4.8947 4.5966 4.3518 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.8099 1.0320 -1.9815 33 1 2.7412 2.7274 -1.4438 34 1 0.6623 3.9780 -1.5394 35 1 -1.5244 4.2386 -2.6409 36 1 -2.5346 2.3383 -3.8374 37 1 -1.3633 0.1742 -3.9228 38 1 0.8274 -0.0842 -2.8286 39 1 4.0241 0.5695 0.2075 40 1 3.8019 2.2593 0.7217 41 1 6.0571 -0.4678 2.0990 42 1 6.1284 -0.5299 3.8765 43 1 4.8249 -1.3753 3.0080 44 1 6.2022 2.5259 1.9693 45 1 6.7461 3.3308 3.4608 46 1 7.1973 1.6377 3.1478 47 1 5.4972 2.9973 8.0822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420663798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:49 Heat of formation + Delta-G solvation = -83.265880 kcal Electronic energy + Delta-G solvation = -28845.282890 eV Core-core repulsion = 24927.911066 eV Total energy + Delta-G solvation = -3917.371824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.09391 -38.09836 -36.56247 -36.28344 -35.26198 -33.77892 -32.44322 -31.53583 -31.14477 -29.92929 -27.09382 -26.45229 -25.65246 -25.16044 -22.86743 -22.55490 -21.18815 -20.50799 -18.16415 -17.46025 -17.18470 -17.10374 -16.63224 -16.13802 -15.74816 -15.38797 -15.24595 -15.19654 -14.64708 -14.41491 -13.69929 -13.64486 -13.42509 -13.21818 -13.08450 -12.94850 -12.72557 -12.62339 -12.47370 -12.37897 -11.93316 -11.88333 -11.80761 -11.43753 -11.33894 -11.29527 -11.26200 -11.05830 -10.97104 -10.81431 -10.69554 -10.41955 -10.28659 -10.03055 -9.78506 -9.34828 -9.17192 -8.74066 -8.59148 -7.99790 -6.15970 -4.15739 0.75501 1.05146 1.10824 3.22716 3.32645 3.37921 3.45292 3.47970 3.51943 4.20288 4.38555 4.47785 4.55226 4.59859 4.71880 4.78630 4.80757 4.89103 4.93231 5.12519 5.17614 5.22933 5.29644 5.33326 5.37325 5.44862 5.53762 5.67011 5.70856 5.74590 5.77615 5.82553 6.06611 6.14254 6.18135 6.23365 6.31237 6.33779 6.40990 6.56516 6.65311 6.71006 6.92036 6.96149 7.17324 7.50494 7.65937 8.44407 8.88734 9.45448 10.95953 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.003213 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.855256 B = 8713.596247 C = 9292.903401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.374 6.374 3 C 0.106 3.894 4 H 0.075 0.925 5 C -0.096 4.096 6 C -0.087 4.087 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.106 4.106 12 C -0.647 4.647 13 S 2.597 3.403 14 O -0.955 6.955 15 O -0.952 6.952 16 N -0.977 5.977 17 C 0.092 3.908 18 C 0.230 3.770 19 H 0.057 0.943 20 C -0.149 4.149 21 C -0.513 4.513 22 H 0.083 0.917 23 C 0.078 3.922 24 N -0.888 5.888 25 Si 0.866 3.134 26 H -0.264 1.264 27 H -0.286 1.286 28 H -0.264 1.264 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.024 0.976 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 -0.074 -22.563 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.292 6.292 3 C 0.046 3.954 4 H 0.093 0.907 5 C -0.135 4.135 6 C -0.087 4.087 7 C -0.137 4.137 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.142 4.142 11 C -0.124 4.124 12 C -0.772 4.772 13 S 2.689 3.311 14 O -0.945 6.945 15 O -0.942 6.942 16 N -0.816 5.816 17 C -0.054 4.054 18 C 0.127 3.873 19 H 0.075 0.925 20 C -0.209 4.209 21 C -0.553 4.553 22 H 0.101 0.899 23 C -0.126 4.126 24 N -0.525 5.525 25 Si 0.693 3.307 26 H -0.188 1.188 27 H -0.212 1.212 28 H -0.189 1.189 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.927 -0.419 -21.961 24.104 hybrid contribution -0.102 1.389 -0.662 1.541 sum -10.029 0.970 -22.623 24.765 Atomic orbital electron populations 1.23289 0.80562 1.03575 1.01239 1.88023 1.20304 1.25920 1.94992 1.21625 0.92124 0.86261 0.95374 0.90699 1.21136 0.94292 1.03170 0.94873 1.19902 0.96643 0.93872 0.98251 1.21147 0.95499 0.97208 0.99808 1.21159 0.95675 0.99005 0.97941 1.21171 0.99986 0.93335 0.99671 1.21174 0.95384 0.97669 0.99978 1.21111 0.95736 0.98657 0.96881 1.30999 1.04415 1.13686 1.28076 1.05521 0.74710 0.74754 0.76162 1.93581 1.71557 1.62734 1.66641 1.93522 1.81250 1.33129 1.86255 1.57726 1.34560 1.20551 1.68810 1.21371 0.95811 0.86427 1.01772 1.19151 0.92401 0.82553 0.93197 0.92514 1.22286 1.00279 1.01285 0.97050 1.21122 1.43263 1.02003 0.88909 0.89924 1.24996 0.94429 0.98446 0.94764 1.69886 1.46020 1.35330 1.01296 0.87019 0.81598 0.83616 0.78505 1.18845 1.21233 1.18883 0.92016 0.89151 0.93949 0.89461 0.89492 0.85858 0.86008 0.86158 0.85975 0.85552 0.84433 0.84200 0.94487 0.89635 0.91231 0.95704 0.92607 0.92619 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 10.23 101.05 1.03 1.15 16 2 O -0.37 -5.34 9.25 -41.98 -0.39 -5.73 16 3 C 0.11 1.37 2.37 -26.74 -0.06 1.31 16 4 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 5 C -0.10 -0.98 5.06 -27.89 -0.14 -1.12 16 6 C -0.09 -0.86 3.89 -104.62 -0.41 -1.27 16 7 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 8 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 9 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 10 C -0.12 -1.02 9.94 -39.59 -0.39 -1.41 16 11 C -0.11 -0.98 6.80 -39.58 -0.27 -1.25 16 12 C -0.65 -8.80 5.90 37.15 0.22 -8.58 16 13 S 2.60 50.45 5.21 -107.50 -0.56 49.89 16 14 O -0.95 -22.02 16.57 -57.54 -0.95 -22.98 16 15 O -0.95 -20.16 15.91 -61.89 -0.98 -21.14 16 16 N -0.98 -19.86 2.99 -115.85 -0.35 -20.21 16 17 C 0.09 1.62 9.79 59.85 0.59 2.21 16 18 C 0.23 5.28 2.23 -69.08 -0.15 5.12 16 19 H 0.06 1.36 4.02 -51.93 -0.21 1.15 16 20 C -0.15 -2.88 9.10 37.16 0.34 -2.54 16 21 C -0.51 -14.02 8.72 -34.44 -0.30 -14.32 16 22 H 0.08 2.40 6.82 -52.49 -0.36 2.04 16 23 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 24 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 25 Si 0.87 21.59 26.99 -169.99 -4.59 17.00 16 26 H -0.26 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 28 H -0.26 -6.05 6.82 56.52 0.39 -5.66 16 29 H 0.06 0.65 3.84 -51.93 -0.20 0.45 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.14 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.14 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.60 6.56 -51.93 -0.34 1.26 16 43 H 0.07 1.19 6.91 -51.93 -0.36 0.83 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -34.41 386.69 -9.39 -43.80 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.34 Total: 2.28 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -0.83 Total: -22.87 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.43 Total: -46.08 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -2.33 Total: -49.85 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.59 Total: 17.00 kcal Atomic # 16 Polarization: 50.45 SS G_CDS: -0.56 Total: 49.89 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.41 -9.39 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420663798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.465 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds