Wall clock time and date at job start Wed Apr 1 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99808 * 2 1 4 4 H 1.09005 * 109.46816 * 29.99530 * 3 2 1 5 5 C 1.52996 * 109.47142 * 270.00015 * 3 2 1 6 6 C 1.50699 * 109.47300 * 64.99540 * 5 3 2 7 7 C 1.38234 * 119.99852 * 90.00531 * 6 5 3 8 8 C 1.38237 * 120.00211 * 179.97438 * 7 6 5 9 9 C 1.38240 * 119.99736 * 359.97438 * 8 7 6 10 10 C 1.38231 * 119.99732 * 0.27275 * 9 8 7 11 11 C 1.38232 * 120.00620 * 359.51659 * 10 9 8 12 12 C 1.52991 * 109.47111 * 149.99788 * 3 2 1 13 13 S 1.81406 * 109.47068 * 299.99769 * 12 3 2 14 14 O 1.42098 * 110.54429 * 291.62719 * 13 12 3 15 15 O 1.42098 * 110.54181 * 68.37834 * 13 12 3 16 16 N 1.65604 * 104.44841 * 180.02562 * 13 12 3 17 17 C 1.46508 * 119.99938 * 270.00238 * 16 13 12 18 18 C 1.46496 * 120.00346 * 90.00028 * 16 13 12 19 19 H 1.09006 * 109.47046 * 0.02562 * 18 16 13 20 20 C 1.52998 * 109.47463 * 240.00300 * 18 16 13 21 21 C 1.50703 * 109.47197 * 119.99690 * 18 16 13 22 22 H 1.07996 * 119.99776 * 35.00298 * 21 18 16 23 23 C 1.37873 * 120.00163 * 215.00378 * 21 18 16 24 24 N 1.31514 * 119.99896 * 184.91585 * 23 21 18 25 25 Si 1.86807 * 120.00119 * 4.91747 * 23 21 18 26 26 H 1.48497 * 109.47183 * 84.83118 * 25 23 21 27 27 H 1.48493 * 109.46982 * 204.83825 * 25 23 21 28 28 H 1.48501 * 109.46923 * 324.83638 * 25 23 21 29 29 H 1.09006 * 109.46785 * 60.00360 * 1 2 3 30 30 H 1.09005 * 109.46736 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47398 * 300.00371 * 1 2 3 32 32 H 1.09004 * 109.46847 * 305.00206 * 5 3 2 33 33 H 1.08991 * 109.47260 * 185.00014 * 5 3 2 34 34 H 1.08003 * 120.00384 * 359.97141 * 7 6 5 35 35 H 1.07997 * 120.00164 * 179.97438 * 8 7 6 36 36 H 1.08003 * 119.99893 * 180.02562 * 9 8 7 37 37 H 1.08007 * 119.99350 * 179.72265 * 10 9 8 38 38 H 1.07998 * 120.00400 * 180.27322 * 11 10 9 39 39 H 1.09000 * 109.47581 * 59.99685 * 12 3 2 40 40 H 1.09009 * 109.47363 * 180.02562 * 12 3 2 41 41 H 1.08998 * 109.47024 * 89.99936 * 17 16 13 42 42 H 1.09002 * 109.46855 * 210.00232 * 17 16 13 43 43 H 1.08997 * 109.47066 * 330.00058 * 17 16 13 44 44 H 1.08998 * 109.47434 * 54.97242 * 20 18 16 45 45 H 1.09003 * 109.47155 * 174.97965 * 20 18 16 46 46 H 1.09001 * 109.46588 * 294.97458 * 20 18 16 47 47 H 0.97000 * 119.99687 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 0.8791 1.9309 -2.1163 7 6 0.2190 3.1443 -2.0638 8 6 -1.0085 3.2907 -2.6823 9 6 -1.5757 2.2238 -3.3538 10 6 -0.9180 1.0090 -3.4020 11 6 0.3115 0.8637 -2.7872 12 6 3.3588 1.2634 0.7213 13 16 3.1128 0.7111 2.4316 14 8 2.4089 1.6950 3.1770 15 8 2.7175 -0.6535 2.4629 16 7 4.6328 0.7117 3.0887 17 6 5.4640 -0.4924 3.0132 18 6 5.1465 1.9163 3.7454 19 1 4.3925 2.7024 3.7039 20 6 6.4141 2.3865 3.0293 21 6 5.4684 1.6053 5.1845 22 1 5.8561 0.6339 5.4533 23 6 5.2680 2.5611 6.1578 24 7 5.6385 2.3250 7.3974 25 14 4.4700 4.1913 5.7158 26 1 2.9927 4.0450 5.7511 27 1 4.8883 5.2282 6.6930 28 1 4.8947 4.5966 4.3518 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.8099 1.0320 -1.9815 33 1 2.7412 2.7274 -1.4438 34 1 0.6623 3.9780 -1.5394 35 1 -1.5244 4.2386 -2.6409 36 1 -2.5346 2.3383 -3.8374 37 1 -1.3633 0.1742 -3.9228 38 1 0.8274 -0.0842 -2.8286 39 1 4.0241 0.5695 0.2075 40 1 3.8019 2.2593 0.7217 41 1 6.0571 -0.4678 2.0990 42 1 6.1284 -0.5299 3.8765 43 1 4.8249 -1.3753 3.0080 44 1 6.2022 2.5259 1.9693 45 1 6.7461 3.3308 3.4608 46 1 7.1973 1.6377 3.1478 47 1 5.4972 2.9973 8.0822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420663798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:47 Heat of formation + Delta-G solvation = -107.037076 kcal Electronic energy + Delta-G solvation = -28846.313686 eV Core-core repulsion = 24927.911066 eV Total energy + Delta-G solvation = -3918.402620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.82283 -38.95645 -38.20150 -37.91987 -36.87319 -34.63753 -34.47819 -32.36265 -31.78044 -31.61914 -27.99841 -27.34970 -27.25881 -26.96002 -23.51416 -23.45522 -22.28194 -21.84644 -19.70530 -19.28396 -18.46355 -18.08630 -17.87049 -17.28728 -17.14944 -16.58044 -16.24677 -16.08417 -15.87164 -15.60678 -15.32682 -14.65951 -14.49375 -14.33820 -14.30366 -14.20641 -13.99128 -13.71633 -13.65294 -13.51075 -13.34301 -13.15726 -13.05790 -13.03708 -12.76653 -12.73604 -12.54248 -12.47460 -12.08116 -12.01166 -11.95828 -11.75612 -11.75420 -11.61022 -11.23832 -10.95655 -10.71645 -9.79403 -9.62369 -9.40866 -8.31845 -6.34908 -0.69351 0.41060 0.49067 1.29125 1.40709 1.43183 1.81380 2.33054 2.52172 2.83284 2.98123 3.06559 3.25936 3.41197 3.75184 3.98054 4.00097 4.04489 4.10834 4.17958 4.19752 4.30720 4.36200 4.46641 4.49528 4.51482 4.64113 4.65362 4.74316 4.75960 4.84072 4.84785 4.91693 4.96112 5.01085 5.16469 5.17519 5.17874 5.39347 5.54384 5.57828 5.60287 5.63623 5.68646 5.98462 6.01159 6.11383 6.34684 6.71199 7.30274 8.84306 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.003213 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.855256 B = 8713.596247 C = 9292.903401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.393 6.393 3 C 0.094 3.906 4 H 0.070 0.930 5 C -0.088 4.088 6 C -0.101 4.101 7 C -0.132 4.132 8 C -0.129 4.129 9 C -0.128 4.128 10 C -0.129 4.129 11 C -0.117 4.117 12 C -0.609 4.609 13 S 2.586 3.414 14 O -1.004 7.004 15 O -0.982 6.982 16 N -0.991 5.991 17 C 0.089 3.911 18 C 0.231 3.769 19 H 0.049 0.951 20 C -0.145 4.145 21 C -0.518 4.518 22 H 0.047 0.953 23 C 0.018 3.982 24 N -0.941 5.941 25 Si 0.913 3.087 26 H -0.282 1.282 27 H -0.278 1.278 28 H -0.225 1.225 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.129 0.871 39 H 0.170 0.830 40 H 0.174 0.826 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 1.201 -26.939 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.312 6.312 3 C 0.035 3.965 4 H 0.088 0.912 5 C -0.127 4.127 6 C -0.101 4.101 7 C -0.150 4.150 8 C -0.147 4.147 9 C -0.146 4.146 10 C -0.147 4.147 11 C -0.135 4.135 12 C -0.741 4.741 13 S 2.685 3.315 14 O -0.994 6.994 15 O -0.972 6.972 16 N -0.829 5.829 17 C -0.056 4.056 18 C 0.126 3.874 19 H 0.067 0.933 20 C -0.204 4.204 21 C -0.558 4.558 22 H 0.065 0.935 23 C -0.180 4.180 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.208 1.208 27 H -0.204 1.204 28 H -0.147 1.147 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.049 0.951 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.147 0.853 39 H 0.188 0.812 40 H 0.192 0.808 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.055 0.830 -26.276 28.146 hybrid contribution -0.170 0.843 0.539 1.015 sum -10.224 1.673 -25.737 27.744 Atomic orbital electron populations 1.23431 0.79855 1.04402 1.01513 1.87986 1.21224 1.26810 1.95194 1.21869 0.91371 0.85934 0.97338 0.91172 1.21087 0.94858 1.04305 0.92431 1.19966 0.96897 0.94299 0.98979 1.21363 0.96001 0.97459 1.00151 1.21443 0.95607 0.99950 0.97697 1.21484 1.00727 0.93096 0.99280 1.21446 0.95137 0.98434 0.99716 1.21249 0.96276 0.98707 0.97228 1.30681 1.06167 1.16146 1.21110 1.05355 0.73741 0.73822 0.78560 1.93522 1.72605 1.63403 1.69904 1.93485 1.81391 1.34625 1.87718 1.57404 1.34628 1.20502 1.70406 1.21499 0.95576 0.85512 1.03052 1.19024 0.93948 0.83229 0.91178 0.93329 1.22167 0.97984 1.00903 0.99389 1.21492 1.42096 1.00297 0.91896 0.93481 1.25792 0.95388 1.02129 0.94728 1.70022 1.48742 1.36785 1.02559 0.86246 0.79338 0.80122 0.80594 1.20768 1.20364 1.14734 0.90361 0.88207 0.95078 0.88495 0.87530 0.85079 0.84485 0.84216 0.84252 0.85335 0.81176 0.80809 0.89843 0.91893 0.91514 0.91005 0.93018 0.92360 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.08 10.23 113.37 1.16 1.24 16 2 O -0.39 -10.41 9.25 -142.52 -1.32 -11.73 16 3 C 0.09 2.15 2.37 30.59 0.07 2.22 16 4 H 0.07 1.67 7.79 -2.38 -0.02 1.65 16 5 C -0.09 -1.44 5.06 29.85 0.15 -1.28 16 6 C -0.10 -1.72 3.89 -19.87 -0.08 -1.80 16 7 C -0.13 -2.13 9.70 22.27 0.22 -1.92 16 8 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 9 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 10 C -0.13 -1.78 9.94 22.27 0.22 -1.56 16 11 C -0.12 -1.87 6.80 22.27 0.15 -1.72 16 12 C -0.61 -13.93 5.90 71.98 0.42 -13.50 16 13 S 2.59 97.28 5.21 -56.49 -0.29 96.99 16 14 O -1.00 -46.39 16.57 -127.65 -2.11 -48.51 16 15 O -0.98 -41.46 15.91 -123.49 -1.96 -43.43 16 16 N -0.99 -39.04 2.99 -520.43 -1.56 -40.60 16 17 C 0.09 3.03 9.79 127.77 1.25 4.28 16 18 C 0.23 10.30 2.23 44.25 0.10 10.40 16 19 H 0.05 2.26 4.02 -2.38 -0.01 2.25 16 20 C -0.14 -5.11 9.10 71.98 0.66 -4.45 16 21 C -0.52 -29.12 8.72 25.60 0.22 -28.90 16 22 H 0.05 2.90 6.82 -2.91 -0.02 2.88 16 23 C 0.02 1.08 5.47 84.65 0.46 1.54 16 24 N -0.94 -59.07 13.96 21.45 0.30 -58.77 16 25 Si 0.91 44.63 26.99 68.60 1.85 46.48 16 26 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.22 -9.45 6.82 99.48 0.68 -8.77 16 29 H 0.08 1.52 3.84 -2.38 -0.01 1.51 16 30 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 32 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.11 1.31 8.08 -2.39 -0.02 1.29 16 34 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 38 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.17 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.17 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 2.40 6.56 -2.39 -0.02 2.39 16 43 H 0.07 2.28 6.91 -2.39 -0.02 2.26 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 46 H 0.06 2.00 7.84 -2.39 -0.02 1.99 16 47 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -79.80 386.69 1.28 -78.52 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.92 Total: 19.60 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 5.46 Total: -38.55 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -1.26 Total: -99.37 kcal Atomic # 8 Polarization: -98.26 SS G_CDS: -5.40 Total: -103.66 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.85 Total: 46.48 kcal Atomic # 16 Polarization: 97.28 SS G_CDS: -0.29 Total: 96.99 kcal Total: -79.80 1.28 -78.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420663798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.521 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds