Wall clock time and date at job start Wed Apr 1 2020 00:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 C 1.35360 * 126.38348 * 94.71745 * 4 2 1 6 6 C 1.41499 * 105.50100 * 179.86874 * 5 4 2 7 7 C 1.47715 * 126.51824 * 180.14681 * 6 5 4 8 8 O 1.21578 * 119.99861 * 0.32114 * 7 6 5 9 9 N 1.34771 * 120.00168 * 180.31917 * 7 6 5 10 10 C 1.47065 * 136.05602 * 359.63498 * 9 7 6 11 11 C 1.53245 * 88.07976 * 207.19835 * 10 9 7 12 12 O 1.42903 * 114.19544 * 87.73057 * 11 10 9 13 13 C 1.50700 * 114.32291 * 220.46745 * 11 10 9 14 14 H 1.08004 * 119.99860 * 93.76448 * 13 11 10 15 15 C 1.37879 * 120.00172 * 273.76027 * 13 11 10 16 16 N 1.31511 * 119.99873 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00092 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47036 * 119.99728 * 17 15 13 20 20 H 1.48506 * 109.46988 * 239.99921 * 17 15 13 21 21 C 1.47067 * 136.05658 * 179.97438 * 9 7 6 22 22 N 1.31807 * 106.96564 * 0.39471 * 6 5 4 23 23 N 1.28467 * 110.06988 * 359.75091 * 22 6 5 24 24 H 0.96998 * 124.88234 * 179.97438 * 23 22 6 25 25 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 26 26 C 1.38232 * 120.00143 * 59.72224 * 25 2 1 27 27 C 1.38232 * 120.00231 * 179.79026 * 26 25 2 28 28 C 1.38236 * 119.99863 * 0.44175 * 27 26 25 29 29 C 1.38242 * 120.00159 * 359.81528 * 28 27 26 30 30 C 1.38233 * 120.00058 * 239.99939 * 25 2 1 31 31 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 1.08006 * 127.24599 * 359.97438 * 5 4 2 35 35 H 1.08994 * 113.46804 * 321.93263 * 10 9 7 36 36 H 1.09002 * 113.46730 * 92.37208 * 10 9 7 37 37 H 0.96693 * 114.00140 * 86.29929 * 12 11 10 38 38 H 0.97003 * 120.00226 * 180.02562 * 16 15 13 39 39 H 1.09000 * 113.46855 * 267.62363 * 21 9 7 40 40 H 1.08993 * 113.46923 * 38.00902 * 21 9 7 41 41 H 1.08002 * 119.99951 * 359.97438 * 26 25 2 42 42 H 1.07993 * 120.00314 * 180.27371 * 27 26 25 43 43 H 1.08003 * 120.00025 * 179.83335 * 28 27 26 44 44 H 1.07990 * 120.00277 * 180.02562 * 29 28 27 45 45 H 1.08004 * 119.99547 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.3845 -0.1336 -2.4033 6 6 2.7890 -1.1988 -3.2423 7 6 3.2695 -1.0873 -4.6346 8 8 3.3519 0.0042 -5.1637 9 7 3.6167 -2.1955 -5.3185 10 6 3.6640 -3.6392 -5.0418 11 6 4.7810 -3.7502 -6.0850 12 8 6.0936 -3.5345 -5.5628 13 6 4.6845 -4.9655 -6.9708 14 1 4.1822 -4.9001 -7.9246 15 6 5.2377 -6.1611 -6.5636 16 7 5.8491 -6.2408 -5.4020 17 14 5.1188 -7.6674 -7.6619 18 1 4.3877 -7.3165 -8.9059 19 1 6.4845 -8.1375 -8.0068 20 1 4.3901 -8.7455 -6.9462 21 6 4.1206 -2.4928 -6.6678 22 7 2.6504 -2.3100 -2.5470 23 7 2.2096 -2.0418 -1.3705 24 1 2.0296 -2.7009 -0.6820 25 6 2.0324 -0.7105 1.2305 26 6 1.6937 -2.0322 1.4521 27 6 2.1581 -2.6852 2.5786 28 6 2.9536 -2.0137 3.4880 29 6 3.2879 -0.6903 3.2691 30 6 2.8271 -0.0387 2.1404 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.3630 0.9185 -2.6467 35 1 3.9919 -3.8767 -4.0299 36 1 2.7522 -4.1654 -5.3244 37 1 6.5065 -4.3285 -5.1966 38 1 6.2386 -7.0818 -5.1156 39 1 3.3316 -2.7109 -7.3875 40 1 4.8352 -1.7570 -7.0361 41 1 1.0688 -2.5556 0.7437 42 1 1.8972 -3.7191 2.7495 43 1 3.3142 -2.5230 4.3695 44 1 3.9097 -0.1658 3.9794 45 1 3.0883 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529071614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:36 Heat of formation + Delta-G solvation = 55.325784 kcal Electronic energy + Delta-G solvation = -28940.454135 eV Core-core repulsion = 24925.940897 eV Total energy + Delta-G solvation = -4014.513238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.63603 -39.74067 -39.27789 -37.17023 -35.37638 -33.91555 -32.12186 -31.89335 -31.18702 -30.51499 -29.20304 -28.44561 -25.57316 -24.95823 -24.61292 -23.26008 -22.67531 -21.72928 -20.87142 -19.81379 -18.11445 -17.69167 -17.42081 -16.96516 -16.04868 -15.73563 -15.60408 -15.34585 -15.06031 -14.88501 -14.34608 -14.14657 -14.05102 -13.97495 -13.77216 -13.41520 -13.32374 -13.03650 -12.58066 -12.50755 -12.32761 -12.15915 -11.92322 -11.85711 -11.49051 -11.33459 -11.18884 -11.04981 -10.94337 -10.56169 -10.39533 -10.14481 -9.73001 -9.31495 -9.20291 -9.17987 -9.09833 -8.87925 -8.71890 -8.28390 -7.73985 -6.34052 -4.43914 0.93022 1.01688 1.91587 2.26083 2.94382 3.16846 3.25956 3.30024 3.40575 3.65408 3.97071 4.19565 4.22935 4.34985 4.50991 4.61761 4.73658 4.75894 4.89410 4.89710 5.00304 5.09210 5.19776 5.32170 5.41381 5.53459 5.59085 5.64516 5.70005 5.74539 5.81970 5.93994 6.07640 6.09792 6.15096 6.20188 6.26265 6.46622 6.53245 6.61025 6.67593 6.78205 6.92351 7.11005 7.20821 7.69156 7.88111 8.06022 8.54818 8.60165 8.87315 9.26918 9.57556 10.72630 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.002709 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.808617 B =10334.126364 C =11561.449457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.020 3.980 3 H 0.106 0.894 4 C 0.014 3.986 5 C -0.175 4.175 6 C 0.006 3.994 7 C 0.618 3.382 8 O -0.559 6.559 9 N -0.620 5.620 10 C 0.083 3.917 11 C 0.236 3.764 12 O -0.571 6.571 13 C -0.530 4.530 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.108 3.892 22 N -0.242 5.242 23 N -0.383 5.383 24 H 0.438 0.562 25 C -0.077 4.077 26 C -0.134 4.134 27 C -0.110 4.110 28 C -0.123 4.123 29 C -0.112 4.112 30 C -0.110 4.110 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.160 0.840 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.393 0.607 38 H 0.272 0.728 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 7.837 18.326 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.000 4.000 3 H 0.124 0.876 4 C -0.112 4.112 5 C -0.203 4.203 6 C -0.156 4.156 7 C 0.406 3.594 8 O -0.438 6.438 9 N -0.351 5.351 10 C -0.040 4.040 11 C 0.194 3.806 12 O -0.384 6.384 13 C -0.569 4.569 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.014 4.014 22 N -0.077 5.077 23 N -0.100 5.100 24 H 0.285 0.715 25 C -0.077 4.077 26 C -0.152 4.152 27 C -0.128 4.128 28 C -0.141 4.141 29 C -0.130 4.130 30 C -0.128 4.128 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.178 0.822 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.641 7.923 17.955 21.866 hybrid contribution -0.174 -1.043 0.307 1.101 sum -9.815 6.879 18.262 21.844 Atomic orbital electron populations 1.21878 0.92606 1.02619 1.02828 1.18749 0.96250 0.98631 0.86348 0.87613 1.21053 1.07262 0.85105 0.97733 1.21422 1.06726 1.00433 0.91730 1.21989 1.07290 0.89961 0.96327 1.16334 0.77297 0.82967 0.82818 1.90722 1.57016 1.26418 1.69596 1.49518 1.61857 1.07381 1.16393 1.24111 1.00886 0.76338 1.02655 1.19544 0.81063 0.90525 0.89424 1.86040 1.29785 1.41340 1.81278 1.21466 1.37047 0.93443 1.04921 0.90895 1.25081 0.93770 0.99313 0.94973 1.69290 1.37158 1.27517 1.19813 0.86271 0.78051 0.81659 0.80466 1.19420 1.20676 1.20735 1.23371 0.96455 0.97156 0.84391 1.73819 1.14969 1.26094 0.92838 1.43709 1.47935 1.06842 1.11518 0.71462 1.19827 0.97819 0.94274 0.95812 1.20964 1.01237 0.94565 0.98429 1.21168 0.97434 1.00017 0.94186 1.21203 0.98439 0.94883 0.99546 1.21211 0.99389 0.94952 0.97443 1.21089 0.97362 1.00220 0.94164 0.91252 0.91527 0.92454 0.82195 0.90931 0.90426 0.75045 0.91740 0.89541 0.91398 0.86545 0.85678 0.85886 0.85782 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.99 37.16 0.33 -0.71 16 2 C 0.02 0.18 2.96 -92.92 -0.28 -0.10 16 3 H 0.11 0.80 7.88 -51.93 -0.41 0.39 16 4 C 0.01 0.18 5.87 -82.21 -0.48 -0.30 16 5 C -0.17 -2.73 10.73 -39.37 -0.42 -3.15 16 6 C 0.01 0.11 7.10 -82.76 -0.59 -0.48 16 7 C 0.62 14.06 8.08 -12.39 -0.10 13.96 16 8 O -0.56 -13.68 17.70 5.30 0.09 -13.58 16 9 N -0.62 -14.31 3.69 -186.53 -0.69 -15.00 16 10 C 0.08 1.94 7.19 -8.63 -0.06 1.87 16 11 C 0.24 5.92 1.57 -91.38 -0.14 5.78 16 12 O -0.57 -15.42 13.54 -35.23 -0.48 -15.90 16 13 C -0.53 -13.60 8.69 -34.44 -0.30 -13.90 16 14 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 15 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 16 N -0.90 -23.28 11.01 55.43 0.61 -22.67 16 17 Si 0.91 19.72 29.54 -169.99 -5.02 14.70 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.11 2.48 8.04 -8.49 -0.07 2.41 16 22 N -0.24 -4.39 10.77 33.42 0.36 -4.03 16 23 N -0.38 -5.30 6.52 33.50 0.22 -5.08 16 24 H 0.44 4.87 5.69 -190.44 -1.08 3.78 16 25 C -0.08 -0.68 4.75 -104.62 -0.50 -1.17 16 26 C -0.13 -1.13 7.55 -39.59 -0.30 -1.43 16 27 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 29 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 30 C -0.11 -0.91 9.67 -39.58 -0.38 -1.29 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.43 7.37 -51.93 -0.38 0.04 16 34 H 0.16 2.25 8.06 -52.48 -0.42 1.82 16 35 H 0.07 1.76 7.51 -51.93 -0.39 1.37 16 36 H 0.08 1.74 8.10 -51.93 -0.42 1.32 16 37 H 0.39 10.69 6.32 45.56 0.29 10.97 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.09 1.79 8.10 -51.93 -0.42 1.37 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.12 0.85 5.98 -52.49 -0.31 0.54 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.83 7.95 -52.48 -0.42 0.41 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -31.60 378.49 -9.83 -41.43 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -6.05 Total: 15.11 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -4.58 Total: -0.67 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.50 Total: -46.79 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.38 Total: -29.48 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.60 -9.83 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529071614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.752 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds