Wall clock time and date at job start Wed Apr 1 2020 00:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 C 1.35360 * 126.38348 * 94.71745 * 4 2 1 6 6 C 1.41499 * 105.50100 * 179.86874 * 5 4 2 7 7 C 1.47715 * 126.51824 * 180.14681 * 6 5 4 8 8 O 1.21578 * 119.99861 * 0.32114 * 7 6 5 9 9 N 1.34771 * 120.00168 * 180.31917 * 7 6 5 10 10 C 1.47065 * 136.05602 * 359.63498 * 9 7 6 11 11 C 1.53245 * 88.07976 * 207.19835 * 10 9 7 12 12 O 1.42903 * 114.19544 * 87.73057 * 11 10 9 13 13 C 1.50700 * 114.32291 * 220.46745 * 11 10 9 14 14 H 1.08004 * 119.99860 * 93.76448 * 13 11 10 15 15 C 1.37879 * 120.00172 * 273.76027 * 13 11 10 16 16 N 1.31511 * 119.99873 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00092 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47036 * 119.99728 * 17 15 13 20 20 H 1.48506 * 109.46988 * 239.99921 * 17 15 13 21 21 C 1.47067 * 136.05658 * 179.97438 * 9 7 6 22 22 N 1.31807 * 106.96564 * 0.39471 * 6 5 4 23 23 N 1.28467 * 110.06988 * 359.75091 * 22 6 5 24 24 H 0.96998 * 124.88234 * 179.97438 * 23 22 6 25 25 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 26 26 C 1.38232 * 120.00143 * 59.72224 * 25 2 1 27 27 C 1.38232 * 120.00231 * 179.79026 * 26 25 2 28 28 C 1.38236 * 119.99863 * 0.44175 * 27 26 25 29 29 C 1.38242 * 120.00159 * 359.81528 * 28 27 26 30 30 C 1.38233 * 120.00058 * 239.99939 * 25 2 1 31 31 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 1.08006 * 127.24599 * 359.97438 * 5 4 2 35 35 H 1.08994 * 113.46804 * 321.93263 * 10 9 7 36 36 H 1.09002 * 113.46730 * 92.37208 * 10 9 7 37 37 H 0.96693 * 114.00140 * 86.29929 * 12 11 10 38 38 H 0.97003 * 120.00226 * 180.02562 * 16 15 13 39 39 H 1.09000 * 113.46855 * 267.62363 * 21 9 7 40 40 H 1.08993 * 113.46923 * 38.00902 * 21 9 7 41 41 H 1.08002 * 119.99951 * 359.97438 * 26 25 2 42 42 H 1.07993 * 120.00314 * 180.27371 * 27 26 25 43 43 H 1.08003 * 120.00025 * 179.83335 * 28 27 26 44 44 H 1.07990 * 120.00277 * 180.02562 * 29 28 27 45 45 H 1.08004 * 119.99547 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.3845 -0.1336 -2.4033 6 6 2.7890 -1.1988 -3.2423 7 6 3.2695 -1.0873 -4.6346 8 8 3.3519 0.0042 -5.1637 9 7 3.6167 -2.1955 -5.3185 10 6 3.6640 -3.6392 -5.0418 11 6 4.7810 -3.7502 -6.0850 12 8 6.0936 -3.5345 -5.5628 13 6 4.6845 -4.9655 -6.9708 14 1 4.1822 -4.9001 -7.9246 15 6 5.2377 -6.1611 -6.5636 16 7 5.8491 -6.2408 -5.4020 17 14 5.1188 -7.6674 -7.6619 18 1 4.3877 -7.3165 -8.9059 19 1 6.4845 -8.1375 -8.0068 20 1 4.3901 -8.7455 -6.9462 21 6 4.1206 -2.4928 -6.6678 22 7 2.6504 -2.3100 -2.5470 23 7 2.2096 -2.0418 -1.3705 24 1 2.0296 -2.7009 -0.6820 25 6 2.0324 -0.7105 1.2305 26 6 1.6937 -2.0322 1.4521 27 6 2.1581 -2.6852 2.5786 28 6 2.9536 -2.0137 3.4880 29 6 3.2879 -0.6903 3.2691 30 6 2.8271 -0.0387 2.1404 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.3630 0.9185 -2.6467 35 1 3.9919 -3.8767 -4.0299 36 1 2.7522 -4.1654 -5.3244 37 1 6.5065 -4.3285 -5.1966 38 1 6.2386 -7.0818 -5.1156 39 1 3.3316 -2.7109 -7.3875 40 1 4.8352 -1.7570 -7.0361 41 1 1.0688 -2.5556 0.7437 42 1 1.8972 -3.7191 2.7495 43 1 3.3142 -2.5230 4.3695 44 1 3.9097 -0.1658 3.9794 45 1 3.0883 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529071614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:35 Heat of formation + Delta-G solvation = 34.931793 kcal Electronic energy + Delta-G solvation = -28941.338485 eV Core-core repulsion = 24925.940897 eV Total energy + Delta-G solvation = -4015.397588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.86316 -41.18231 -40.30403 -39.01243 -36.14081 -35.88456 -34.12318 -33.12204 -31.84268 -31.55083 -30.33243 -29.83252 -27.43692 -26.82902 -25.36378 -24.56289 -23.46858 -22.62286 -21.93326 -21.54438 -19.84014 -19.20651 -18.74923 -18.02429 -17.33705 -17.22703 -16.95774 -16.67495 -16.37237 -16.07995 -15.90652 -15.73736 -15.05158 -14.84341 -14.79510 -14.53533 -14.46385 -14.20278 -14.09348 -13.93814 -13.75100 -13.41233 -13.11665 -12.89586 -12.79685 -12.78804 -12.55177 -12.22510 -12.15998 -11.97638 -11.83942 -11.70944 -11.54355 -11.07891 -10.67203 -10.52516 -10.23914 -10.03980 -9.89008 -9.72363 -9.59853 -8.26682 -6.44034 0.31937 0.43327 0.48808 1.05937 1.46356 1.50051 1.61394 1.72495 2.05985 2.31877 2.41768 2.81039 2.94640 3.27106 3.46472 3.59438 3.70486 3.87311 3.96970 4.07380 4.19394 4.21532 4.28614 4.35145 4.46643 4.51678 4.55255 4.61935 4.64245 4.66847 4.79933 4.88805 4.93987 4.98614 5.00268 5.06034 5.12061 5.22978 5.25562 5.31072 5.50727 5.58719 5.59520 5.73276 5.90681 6.00143 6.05233 6.62057 6.73696 6.76181 7.12469 7.29659 7.48021 8.80119 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.002709 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.808617 B =10334.126364 C =11561.449457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.025 3.975 3 H 0.124 0.876 4 C 0.044 3.956 5 C -0.188 4.188 6 C -0.028 4.028 7 C 0.612 3.388 8 O -0.584 6.584 9 N -0.625 5.625 10 C 0.101 3.899 11 C 0.218 3.782 12 O -0.586 6.586 13 C -0.549 4.549 14 H 0.078 0.922 15 C 0.029 3.971 16 N -0.919 5.919 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.277 1.277 21 C 0.109 3.891 22 N -0.268 5.268 23 N -0.368 5.368 24 H 0.450 0.550 25 C -0.090 4.090 26 C -0.145 4.145 27 C -0.121 4.121 28 C -0.131 4.131 29 C -0.120 4.120 30 C -0.120 4.120 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.172 0.828 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.389 0.611 38 H 0.276 0.724 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.123 0.877 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 7.668 19.807 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.005 3.995 3 H 0.142 0.858 4 C -0.082 4.082 5 C -0.216 4.216 6 C -0.188 4.188 7 C 0.401 3.599 8 O -0.465 6.465 9 N -0.357 5.357 10 C -0.022 4.022 11 C 0.177 3.823 12 O -0.399 6.399 13 C -0.587 4.587 14 H 0.096 0.904 15 C -0.171 4.171 16 N -0.560 5.560 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.203 1.203 21 C -0.013 4.013 22 N -0.104 5.104 23 N -0.086 5.086 24 H 0.300 0.700 25 C -0.091 4.091 26 C -0.164 4.164 27 C -0.139 4.139 28 C -0.148 4.148 29 C -0.138 4.138 30 C -0.138 4.138 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.190 0.810 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.244 0.756 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.744 7.753 19.445 23.530 hybrid contribution 0.169 -0.967 -0.008 0.982 sum -10.575 6.786 19.437 23.145 Atomic orbital electron populations 1.21875 0.91236 1.02852 1.03708 1.18907 0.97226 0.98930 0.84388 0.85800 1.21557 1.04331 0.84233 0.98104 1.21632 1.07407 1.00523 0.92074 1.21726 1.09745 0.91856 0.95435 1.16846 0.76637 0.82333 0.84044 1.90681 1.58175 1.27052 1.70604 1.49570 1.62238 1.07450 1.16425 1.23855 1.00465 0.76634 1.01287 1.19814 0.80603 0.91594 0.90320 1.86024 1.31077 1.41320 1.81507 1.21679 1.37770 0.93962 1.05315 0.90423 1.25835 0.93260 1.01873 0.96138 1.69358 1.37365 1.28298 1.20944 0.85248 0.77861 0.78131 0.78810 1.18872 1.20680 1.20263 1.23405 0.96829 0.96043 0.84997 1.73719 1.16141 1.26224 0.94339 1.43785 1.46353 1.07934 1.10570 0.69999 1.19870 0.98602 0.94563 0.96024 1.21132 1.01573 0.94739 0.98922 1.21436 0.97454 1.00866 0.94143 1.21519 0.98109 0.95141 1.00069 1.21515 0.99435 0.95182 0.97701 1.21354 0.97067 1.01098 0.94233 0.91324 0.89707 0.92601 0.81019 0.92303 0.89645 0.75568 0.91414 0.87366 0.92191 0.85955 0.84305 0.84220 0.83998 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.99 71.98 0.65 -1.05 16 2 C 0.03 0.38 2.96 -12.28 -0.04 0.35 16 3 H 0.12 1.49 7.88 -2.39 -0.02 1.47 16 4 C 0.04 1.05 5.87 41.40 0.24 1.30 16 5 C -0.19 -5.76 10.73 22.41 0.24 -5.52 16 6 C -0.03 -1.11 7.10 42.46 0.30 -0.81 16 7 C 0.61 28.44 8.08 86.75 0.70 29.14 16 8 O -0.58 -29.23 17.70 -3.96 -0.07 -29.30 16 9 N -0.63 -29.44 3.69 -862.82 -3.19 -32.62 16 10 C 0.10 4.77 7.19 83.10 0.60 5.36 16 11 C 0.22 11.10 1.57 -11.29 -0.02 11.08 16 12 O -0.59 -32.48 13.54 -148.98 -2.02 -34.50 16 13 C -0.55 -28.15 8.69 25.60 0.22 -27.93 16 14 H 0.08 3.81 7.81 -2.91 -0.02 3.79 16 15 C 0.03 1.46 5.39 84.66 0.46 1.92 16 16 N -0.92 -47.86 11.01 21.45 0.24 -47.62 16 17 Si 0.97 39.97 29.54 68.60 2.03 42.00 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 21 C 0.11 5.08 8.04 83.19 0.67 5.75 16 22 N -0.27 -9.73 10.77 -48.17 -0.52 -10.25 16 23 N -0.37 -9.82 6.52 -47.93 -0.31 -10.14 16 24 H 0.45 9.45 5.69 -220.00 -1.25 8.20 16 25 C -0.09 -1.39 4.75 -19.87 -0.09 -1.48 16 26 C -0.15 -2.19 7.55 22.27 0.17 -2.02 16 27 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 28 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 29 C -0.12 -1.59 10.05 22.27 0.22 -1.36 16 30 C -0.12 -1.69 9.67 22.27 0.22 -1.47 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.70 7.37 -2.38 -0.02 0.69 16 34 H 0.17 4.69 8.06 -2.91 -0.02 4.67 16 35 H 0.06 2.92 7.51 -2.39 -0.02 2.90 16 36 H 0.09 3.86 8.10 -2.39 -0.02 3.84 16 37 H 0.39 21.73 6.32 -74.06 -0.47 21.27 16 38 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 39 H 0.11 4.48 8.10 -2.39 -0.02 4.46 16 40 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.12 1.58 5.98 -2.91 -0.02 1.57 16 42 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.14 1.27 8.06 -2.92 -0.02 1.24 16 45 H 0.14 1.47 7.95 -2.91 -0.02 1.45 16 Total: -1.00 -68.23 378.49 0.46 -67.77 By element: Atomic # 1 Polarization: 45.08 SS G_CDS: -0.68 Total: 44.40 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 4.98 Total: 10.26 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -3.78 Total: -100.63 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -2.09 Total: -63.80 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -68.23 0.46 -67.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529071614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.701 kcal (2) G-P(sol) polarization free energy of solvation -68.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds