Wall clock time and date at job start Wed Apr 1 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.53001 * 109.47376 * 239.99703 * 2 1 3 6 6 N 1.46497 * 109.46900 * 180.02562 * 5 2 1 7 7 C 1.46498 * 120.00008 * 274.99900 * 6 5 2 8 8 C 1.50700 * 109.46998 * 85.00110 * 7 6 5 9 9 C 1.38234 * 119.99994 * 269.72184 * 8 7 6 10 10 C 1.38239 * 119.99689 * 179.76335 * 9 8 7 11 11 C 1.38235 * 119.99879 * 0.51991 * 10 9 8 12 12 C 1.38236 * 120.00212 * 359.73606 * 11 10 9 13 13 C 1.38235 * 119.99718 * 90.00512 * 8 7 6 14 14 S 1.65602 * 120.00168 * 95.00309 * 6 5 2 15 15 O 1.42098 * 104.27726 * 206.07018 * 14 6 5 16 16 O 1.42105 * 104.27483 * 333.92494 * 14 6 5 17 17 C 1.81396 * 104.44840 * 89.99527 * 14 6 5 18 18 C 1.53006 * 109.46983 * 180.02562 * 17 14 6 19 19 C 1.52998 * 109.47297 * 180.02562 * 18 17 14 20 20 C 1.50699 * 109.47272 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99885 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99849 * 179.97438 * 20 19 18 23 23 N 1.31505 * 120.00022 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99539 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47295 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46697 * 120.00217 * 24 22 20 27 27 H 1.48496 * 109.47139 * 240.00040 * 24 22 20 28 28 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 29 29 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 30 30 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 31 31 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 32 32 H 1.08999 * 109.47164 * 300.00361 * 5 2 1 33 33 H 1.08997 * 109.47124 * 60.00063 * 5 2 1 34 34 H 1.08998 * 109.47429 * 205.00382 * 7 6 5 35 35 H 1.09002 * 109.47091 * 325.00119 * 7 6 5 36 36 H 1.07992 * 120.00214 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.99857 * 180.23601 * 10 9 8 38 38 H 1.07997 * 119.99688 * 179.72274 * 11 10 9 39 39 H 1.07994 * 119.99894 * 179.97438 * 12 11 10 40 40 H 1.08000 * 120.00142 * 0.02562 * 13 8 7 41 41 H 1.08998 * 109.47503 * 300.00114 * 17 14 6 42 42 H 1.09000 * 109.47337 * 60.00323 * 17 14 6 43 43 H 1.09003 * 109.47189 * 299.99861 * 18 17 14 44 44 H 1.08994 * 109.47316 * 60.00010 * 18 17 14 45 45 H 1.09003 * 109.46559 * 299.99844 * 19 18 17 46 46 H 1.08994 * 109.47259 * 59.99572 * 19 18 17 47 47 H 0.97008 * 119.99998 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0401 -0.7213 -1.2492 6 7 3.5051 -0.7218 -1.2488 7 6 4.2381 0.4279 -1.7847 8 6 4.3821 1.4763 -0.7117 9 6 3.4184 2.4572 -0.5702 10 6 3.5481 3.4160 0.4172 11 6 4.6467 3.4001 1.2560 12 6 5.6130 2.4223 1.1110 13 6 5.4807 1.4604 0.1271 14 16 4.3325 -2.0219 -0.6426 15 8 5.5791 -1.4811 -0.2269 16 8 3.4360 -2.6015 0.2953 17 6 4.5588 -3.1194 -2.0691 18 6 5.3198 -4.3729 -1.6324 19 6 5.5112 -5.2984 -2.8357 20 6 6.2602 -6.5333 -2.4055 21 1 6.5685 -6.6469 -1.3767 22 6 6.5510 -7.5186 -3.3251 23 7 6.1743 -7.3809 -4.5775 24 14 7.4801 -9.0489 -2.7920 25 1 7.7868 -8.9617 -1.3417 26 1 6.6451 -10.2496 -3.0495 27 1 8.7463 -9.1523 -3.5608 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7209 -1.5952 1.2330 32 1 1.6767 -1.7490 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 5.2263 0.1072 -2.1143 35 1 3.6911 0.8457 -2.6299 36 1 2.5622 2.4721 -1.2281 37 1 2.7933 4.1802 0.5303 38 1 4.7502 4.1519 2.0245 39 1 6.4715 2.4102 1.7661 40 1 6.2361 0.6970 0.0132 41 1 3.5846 -3.4059 -2.4653 42 1 5.1264 -2.5998 -2.8410 43 1 6.2940 -4.0869 -1.2360 44 1 4.7518 -4.8925 -0.8608 45 1 4.5371 -5.5845 -3.2325 46 1 6.0793 -4.7786 -3.6071 47 1 6.3785 -8.0743 -5.2245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533092807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:25 Heat of formation + Delta-G solvation = -110.811055 kcal Electronic energy + Delta-G solvation = -28622.271313 eV Core-core repulsion = 24703.705040 eV Total energy + Delta-G solvation = -3918.566272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.60042 -38.03914 -36.84413 -35.65517 -35.50755 -34.68163 -32.20517 -31.90895 -31.07641 -30.71421 -27.82408 -27.14718 -24.98931 -23.66361 -22.64371 -21.78499 -21.44785 -20.57778 -18.78867 -17.74171 -17.12156 -16.85991 -16.54898 -15.91713 -15.59679 -15.48127 -15.12170 -15.10870 -14.73215 -14.50296 -14.31660 -14.10472 -13.46713 -13.42043 -12.93379 -12.85507 -12.60056 -12.51549 -12.32515 -12.28293 -11.92993 -11.88974 -11.75690 -11.69297 -11.60702 -11.33804 -11.19430 -10.95660 -10.94837 -10.86614 -10.82336 -10.41200 -10.29802 -9.98006 -9.48565 -9.21514 -8.97724 -8.89933 -8.73491 -8.43137 -6.07754 -4.10767 0.41417 1.26502 1.38260 2.77671 3.28117 3.35733 3.40788 3.75898 4.09240 4.27718 4.31682 4.41151 4.53912 4.67798 4.71528 4.84949 4.92792 4.93789 5.02611 5.09459 5.11604 5.15676 5.24755 5.28876 5.36767 5.39228 5.46112 5.52782 5.60620 5.70971 5.82026 5.87049 5.92028 6.04714 6.09105 6.22541 6.37415 6.42504 6.43150 6.52186 6.60730 6.84929 6.97830 7.54778 7.64274 7.87721 7.90391 8.30855 8.95776 9.54177 11.03523 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.002775 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.816915 B =10089.349858 C =10783.189929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.073 3.927 3 H 0.107 0.893 4 O -0.553 6.553 5 C 0.092 3.908 6 N -0.991 5.991 7 C 0.163 3.837 8 C -0.104 4.104 9 C -0.108 4.108 10 C -0.129 4.129 11 C -0.118 4.118 12 C -0.123 4.123 13 C -0.092 4.092 14 S 2.603 3.397 15 O -0.955 6.955 16 O -0.953 6.953 17 C -0.615 4.615 18 C -0.105 4.105 19 C 0.031 3.969 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.383 0.617 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 22.297 5.819 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.012 3.988 3 H 0.125 0.875 4 O -0.361 6.361 5 C -0.034 4.034 6 N -0.825 5.825 7 C 0.038 3.962 8 C -0.106 4.106 9 C -0.127 4.127 10 C -0.147 4.147 11 C -0.136 4.136 12 C -0.141 4.141 13 C -0.110 4.110 14 S 2.700 3.300 15 O -0.945 6.945 16 O -0.944 6.944 17 C -0.746 4.746 18 C -0.144 4.144 19 C -0.008 4.008 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.535 5.535 24 Si 0.721 3.279 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.233 0.767 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.038 0.962 46 H 0.039 0.961 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.625 22.682 6.640 25.518 hybrid contribution -0.027 -1.476 -0.720 1.642 sum -9.652 21.206 5.919 24.039 Atomic orbital electron populations 1.22494 0.96576 1.02737 1.02600 1.22563 0.92426 0.98102 0.85666 0.87515 1.86571 1.77280 1.29864 1.42347 1.22081 0.79521 1.02386 0.99434 1.57680 1.14088 1.31173 1.79576 1.20182 0.97343 0.84973 0.93693 1.20188 0.95312 0.96458 0.98657 1.20921 0.98218 0.94971 0.98577 1.21045 0.98227 0.99132 0.96287 1.21142 0.94629 0.98727 0.99140 1.21201 0.99270 0.95202 0.98450 1.21470 0.97938 0.97754 0.93875 1.05401 0.73882 0.74023 0.76740 1.93520 1.44193 1.76611 1.80196 1.93454 1.64617 1.78089 1.58199 1.30677 1.10441 1.13757 1.19767 1.21484 0.98152 0.92400 1.02368 1.19064 0.97377 0.92993 0.91341 1.21293 1.36220 1.03197 0.95684 0.92307 1.25023 0.95912 0.98565 0.94902 1.69964 1.46799 1.34357 1.02331 0.86501 0.79589 0.82842 0.78918 1.19564 1.20929 1.20912 0.91703 0.91766 0.92086 0.76711 0.89734 0.89734 0.88984 0.89576 0.86393 0.86430 0.86467 0.86158 0.84127 0.85720 0.85619 0.91634 0.91662 0.96189 0.96148 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 9.53 37.16 0.35 -1.07 16 2 C 0.07 0.74 3.63 -26.73 -0.10 0.64 16 3 H 0.11 1.08 4.43 -51.93 -0.23 0.85 16 4 O -0.55 -7.51 11.80 -56.27 -0.66 -8.17 16 5 C 0.09 0.84 5.11 -4.04 -0.02 0.82 16 6 N -0.99 -10.99 2.61 -115.67 -0.30 -11.29 16 7 C 0.16 1.60 5.44 -5.19 -0.03 1.58 16 8 C -0.10 -1.17 5.06 -104.62 -0.53 -1.70 16 9 C -0.11 -1.04 7.11 -39.58 -0.28 -1.32 16 10 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 11 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 12 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 13 C -0.09 -1.17 9.12 -39.58 -0.36 -1.53 16 14 S 2.60 38.04 5.26 -107.50 -0.57 37.47 16 15 O -0.95 -16.18 14.82 -57.54 -0.85 -17.03 16 16 O -0.95 -15.67 14.05 -66.03 -0.93 -16.60 16 17 C -0.62 -9.38 6.18 37.16 0.23 -9.15 16 18 C -0.10 -2.11 5.16 -26.73 -0.14 -2.25 16 19 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 20 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 24 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.38 4.86 7.53 45.56 0.34 5.21 16 32 H 0.08 0.74 7.61 -51.93 -0.39 0.35 16 33 H 0.08 0.53 8.00 -51.93 -0.42 0.11 16 34 H 0.09 0.88 7.55 -51.93 -0.39 0.49 16 35 H 0.09 0.59 7.95 -51.93 -0.41 0.18 16 36 H 0.12 0.85 7.68 -52.49 -0.40 0.45 16 37 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.14 1.95 6.48 -52.49 -0.34 1.61 16 41 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -34.75 389.43 -11.20 -45.95 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.86 Total: 4.97 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: -2.61 Total: -31.92 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.43 Total: -37.04 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -2.44 Total: -41.80 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 38.04 SS G_CDS: -0.57 Total: 37.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.75 -11.20 -45.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533092807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.859 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds