Wall clock time and date at job start Wed Apr 1 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.53001 * 109.47376 * 239.99703 * 2 1 3 6 6 N 1.46497 * 109.46900 * 180.02562 * 5 2 1 7 7 C 1.46498 * 120.00008 * 274.99900 * 6 5 2 8 8 C 1.50700 * 109.46998 * 85.00110 * 7 6 5 9 9 C 1.38234 * 119.99994 * 269.72184 * 8 7 6 10 10 C 1.38239 * 119.99689 * 179.76335 * 9 8 7 11 11 C 1.38235 * 119.99879 * 0.51991 * 10 9 8 12 12 C 1.38236 * 120.00212 * 359.73606 * 11 10 9 13 13 C 1.38235 * 119.99718 * 90.00512 * 8 7 6 14 14 S 1.65602 * 120.00168 * 95.00309 * 6 5 2 15 15 O 1.42098 * 104.27726 * 206.07018 * 14 6 5 16 16 O 1.42105 * 104.27483 * 333.92494 * 14 6 5 17 17 C 1.81396 * 104.44840 * 89.99527 * 14 6 5 18 18 C 1.53006 * 109.46983 * 180.02562 * 17 14 6 19 19 C 1.52998 * 109.47297 * 180.02562 * 18 17 14 20 20 C 1.50699 * 109.47272 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99885 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99849 * 179.97438 * 20 19 18 23 23 N 1.31505 * 120.00022 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99539 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47295 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46697 * 120.00217 * 24 22 20 27 27 H 1.48496 * 109.47139 * 240.00040 * 24 22 20 28 28 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 29 29 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 30 30 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 31 31 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 32 32 H 1.08999 * 109.47164 * 300.00361 * 5 2 1 33 33 H 1.08997 * 109.47124 * 60.00063 * 5 2 1 34 34 H 1.08998 * 109.47429 * 205.00382 * 7 6 5 35 35 H 1.09002 * 109.47091 * 325.00119 * 7 6 5 36 36 H 1.07992 * 120.00214 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.99857 * 180.23601 * 10 9 8 38 38 H 1.07997 * 119.99688 * 179.72274 * 11 10 9 39 39 H 1.07994 * 119.99894 * 179.97438 * 12 11 10 40 40 H 1.08000 * 120.00142 * 0.02562 * 13 8 7 41 41 H 1.08998 * 109.47503 * 300.00114 * 17 14 6 42 42 H 1.09000 * 109.47337 * 60.00323 * 17 14 6 43 43 H 1.09003 * 109.47189 * 299.99861 * 18 17 14 44 44 H 1.08994 * 109.47316 * 60.00010 * 18 17 14 45 45 H 1.09003 * 109.46559 * 299.99844 * 19 18 17 46 46 H 1.08994 * 109.47259 * 59.99572 * 19 18 17 47 47 H 0.97008 * 119.99998 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0401 -0.7213 -1.2492 6 7 3.5051 -0.7218 -1.2488 7 6 4.2381 0.4279 -1.7847 8 6 4.3821 1.4763 -0.7117 9 6 3.4184 2.4572 -0.5702 10 6 3.5481 3.4160 0.4172 11 6 4.6467 3.4001 1.2560 12 6 5.6130 2.4223 1.1110 13 6 5.4807 1.4604 0.1271 14 16 4.3325 -2.0219 -0.6426 15 8 5.5791 -1.4811 -0.2269 16 8 3.4360 -2.6015 0.2953 17 6 4.5588 -3.1194 -2.0691 18 6 5.3198 -4.3729 -1.6324 19 6 5.5112 -5.2984 -2.8357 20 6 6.2602 -6.5333 -2.4055 21 1 6.5685 -6.6469 -1.3767 22 6 6.5510 -7.5186 -3.3251 23 7 6.1743 -7.3809 -4.5775 24 14 7.4801 -9.0489 -2.7920 25 1 7.7868 -8.9617 -1.3417 26 1 6.6451 -10.2496 -3.0495 27 1 8.7463 -9.1523 -3.5608 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7209 -1.5952 1.2330 32 1 1.6767 -1.7490 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 5.2263 0.1072 -2.1143 35 1 3.6911 0.8457 -2.6299 36 1 2.5622 2.4721 -1.2281 37 1 2.7933 4.1802 0.5303 38 1 4.7502 4.1519 2.0245 39 1 6.4715 2.4102 1.7661 40 1 6.2361 0.6970 0.0132 41 1 3.5846 -3.4059 -2.4653 42 1 5.1264 -2.5998 -2.8410 43 1 6.2940 -4.0869 -1.2360 44 1 4.7518 -4.8925 -0.8608 45 1 4.5371 -5.5845 -3.2325 46 1 6.0793 -4.7786 -3.6071 47 1 6.3785 -8.0743 -5.2245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533092807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:24 Heat of formation + Delta-G solvation = -133.686078 kcal Electronic energy + Delta-G solvation = -28623.263248 eV Core-core repulsion = 24703.705040 eV Total energy + Delta-G solvation = -3919.558208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.37341 -38.89079 -38.02755 -36.89849 -36.47666 -36.38601 -34.17706 -32.69345 -31.85196 -31.47662 -29.66020 -27.84850 -25.93623 -25.41382 -23.42012 -22.54898 -22.44113 -22.13102 -19.85699 -18.84110 -18.55819 -17.98622 -17.65630 -17.12019 -16.73647 -16.55196 -16.32118 -16.05638 -15.90741 -15.74655 -15.29583 -15.10785 -14.52221 -14.22295 -14.20758 -14.07897 -13.79168 -13.60384 -13.53037 -13.22100 -13.14912 -13.03798 -13.00486 -12.80217 -12.78441 -12.61041 -12.53186 -12.42979 -12.15009 -12.09416 -11.78694 -11.73342 -11.61041 -11.37747 -11.18192 -11.01131 -10.59824 -9.88483 -9.69864 -9.55447 -8.24596 -6.35614 -0.74864 0.47080 0.58140 1.38475 1.39251 1.52574 1.77693 2.38568 2.92612 2.95460 3.08926 3.21423 3.51519 3.73147 3.84360 3.87869 3.94184 4.01184 4.15770 4.22884 4.24428 4.35250 4.37199 4.41099 4.55504 4.61335 4.66690 4.73001 4.77949 4.82019 4.90785 4.94582 4.98399 5.05105 5.17842 5.22094 5.27270 5.40750 5.43175 5.59250 5.61069 5.63285 5.71072 5.77388 5.80795 6.17901 6.20586 6.79948 6.99308 7.33877 8.87112 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.002775 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.816915 B =10089.349858 C =10783.189929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 H 0.108 0.892 4 O -0.581 6.581 5 C 0.082 3.918 6 N -0.981 5.981 7 C 0.155 3.845 8 C -0.115 4.115 9 C -0.106 4.106 10 C -0.132 4.132 11 C -0.125 4.125 12 C -0.143 4.143 13 C -0.122 4.122 14 S 2.621 3.379 15 O -0.982 6.982 16 O -0.973 6.973 17 C -0.616 4.616 18 C -0.105 4.105 19 C 0.032 3.968 20 C -0.553 4.553 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.929 5.929 24 Si 0.962 3.038 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.276 1.276 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.382 0.618 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.004 0.996 46 H 0.002 0.998 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 23.665 5.326 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.005 3.995 3 H 0.125 0.875 4 O -0.389 6.389 5 C -0.043 4.043 6 N -0.817 5.817 7 C 0.031 3.969 8 C -0.116 4.116 9 C -0.125 4.125 10 C -0.149 4.149 11 C -0.144 4.144 12 C -0.161 4.161 13 C -0.141 4.141 14 S 2.717 3.283 15 O -0.973 6.973 16 O -0.963 6.963 17 C -0.745 4.745 18 C -0.144 4.144 19 C -0.006 4.006 20 C -0.591 4.591 21 H 0.077 0.923 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.787 3.213 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.232 0.768 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.145 0.855 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.325 24.041 6.146 27.277 hybrid contribution 0.457 -1.791 -0.566 1.933 sum -10.868 22.251 5.581 25.384 Atomic orbital electron populations 1.22429 0.94612 1.03155 1.03577 1.22787 0.94024 0.97772 0.84896 0.87472 1.86543 1.78059 1.29992 1.44353 1.22404 0.77862 1.03248 1.00741 1.57351 1.15013 1.30034 1.79321 1.20473 0.97888 0.84172 0.94415 1.20372 0.95185 0.97376 0.98710 1.21264 0.98419 0.94012 0.98774 1.21459 0.98332 0.99529 0.95608 1.21445 0.94470 0.98628 0.99824 1.21387 1.00265 0.95808 0.98657 1.21491 0.98783 0.98194 0.95655 1.04630 0.73283 0.74239 0.76174 1.93495 1.45984 1.77101 1.80686 1.93428 1.64948 1.79003 1.58963 1.30640 1.10932 1.11945 1.21007 1.21283 0.98987 0.93834 1.00272 1.18954 0.95733 0.93171 0.92759 1.21760 1.36760 1.04640 0.95901 0.92323 1.25928 0.96763 1.01895 0.94917 1.70069 1.47832 1.35609 1.03403 0.85436 0.78338 0.78764 0.78789 1.18863 1.20079 1.20142 0.92275 0.89213 0.91993 0.76815 0.89432 0.85647 0.89415 0.85550 0.83319 0.83692 0.84476 0.85851 0.86462 0.83858 0.84075 0.91982 0.91729 0.97807 0.97934 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.53 71.98 0.69 -1.53 16 2 C 0.07 1.15 3.63 30.60 0.11 1.26 16 3 H 0.11 1.85 4.43 -2.39 -0.01 1.84 16 4 O -0.58 -15.41 11.80 -128.87 -1.52 -16.93 16 5 C 0.08 1.25 5.11 86.38 0.44 1.69 16 6 N -0.98 -19.89 2.61 -519.86 -1.36 -21.25 16 7 C 0.15 2.72 5.44 85.63 0.47 3.18 16 8 C -0.11 -2.41 5.06 -19.87 -0.10 -2.51 16 9 C -0.11 -1.73 7.11 22.27 0.16 -1.57 16 10 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 11 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 12 C -0.14 -3.34 10.05 22.27 0.22 -3.12 16 13 C -0.12 -3.20 9.12 22.27 0.20 -3.00 16 14 S 2.62 76.01 5.26 -56.49 -0.30 75.72 16 15 O -0.98 -34.24 14.82 -127.65 -1.89 -36.13 16 16 O -0.97 -32.02 14.05 -119.53 -1.68 -33.70 16 17 C -0.62 -18.50 6.18 71.98 0.44 -18.05 16 18 C -0.10 -4.30 5.16 30.60 0.16 -4.15 16 19 C 0.03 1.66 4.97 29.85 0.15 1.81 16 20 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16 21 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 22 C 0.00 0.19 5.46 84.66 0.46 0.65 16 23 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 24 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.38 9.70 7.53 -74.06 -0.56 9.15 16 32 H 0.09 1.31 7.61 -2.39 -0.02 1.29 16 33 H 0.13 0.91 8.00 -2.39 -0.02 0.89 16 34 H 0.09 1.61 7.55 -2.39 -0.02 1.59 16 35 H 0.13 1.19 7.95 -2.39 -0.02 1.17 16 36 H 0.15 1.44 7.68 -2.91 -0.02 1.41 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.12 3.52 6.48 -2.91 -0.02 3.50 16 41 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 42 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 43 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -77.28 389.43 0.05 -77.23 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.40 Total: 24.89 kcal Atomic # 6 Polarization: -64.88 SS G_CDS: 4.08 Total: -60.80 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -1.07 Total: -76.58 kcal Atomic # 8 Polarization: -81.66 SS G_CDS: -5.09 Total: -86.76 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 76.01 SS G_CDS: -0.30 Total: 75.72 kcal Total: -77.28 0.05 -77.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533092807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.452 kcal (2) G-P(sol) polarization free energy of solvation -77.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds