Wall clock time and date at job start Wed Apr 1 2020 01:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47396 * 2 1 4 4 C 1.53003 * 109.47628 * 120.00420 * 2 1 3 5 5 C 1.50700 * 109.46820 * 295.00500 * 4 2 1 6 6 C 1.39673 * 119.64604 * 124.72673 * 5 4 2 7 7 N 1.31342 * 120.70648 * 179.74186 * 6 5 4 8 8 C 1.33758 * 119.70415 * 0.52250 * 7 6 5 9 9 C 1.40589 * 121.09253 * 179.73777 * 8 7 6 10 10 C 1.36056 * 119.71490 * 180.02562 * 9 8 7 11 11 C 1.39412 * 120.96740 * 359.97438 * 10 9 8 12 12 C 1.36063 * 120.96579 * 359.97438 * 11 10 9 13 13 C 1.40585 * 119.71775 * 0.02562 * 12 11 10 14 14 N 1.31336 * 119.64052 * 304.99459 * 5 4 2 15 15 C 1.50704 * 109.46906 * 240.00250 * 2 1 3 16 16 O 1.21276 * 120.00084 * 274.66616 * 15 2 1 17 17 N 1.34779 * 119.99720 * 94.67162 * 15 2 1 18 18 C 1.47584 * 134.49144 * 174.91150 * 17 15 2 19 19 C 1.53942 * 86.11483 * 155.35819 * 18 17 15 20 20 O 1.42904 * 113.74113 * 269.15446 * 19 18 17 21 21 C 1.50703 * 113.74131 * 137.95717 * 19 18 17 22 22 H 1.07996 * 119.99817 * 1.92063 * 21 19 18 23 23 C 1.37873 * 119.99925 * 182.19994 * 21 19 18 24 24 N 1.31512 * 120.00479 * 359.72033 * 23 21 19 25 25 Si 1.86804 * 120.00062 * 179.72269 * 23 21 19 26 26 H 1.48501 * 109.46788 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47196 * 119.99861 * 25 23 21 28 28 H 1.48503 * 109.47091 * 240.00129 * 25 23 21 29 29 C 1.47812 * 134.45847 * 354.78181 * 17 15 2 30 30 H 1.08998 * 109.47424 * 65.14890 * 1 2 3 31 31 H 1.09006 * 109.47286 * 185.14346 * 1 2 3 32 32 H 1.09000 * 109.47215 * 305.14219 * 1 2 3 33 33 H 1.09002 * 109.46834 * 54.99439 * 4 2 1 34 34 H 1.08993 * 109.47327 * 174.99927 * 4 2 1 35 35 H 1.07995 * 119.64828 * 359.97438 * 6 5 4 36 36 H 1.08000 * 120.14240 * 0.03863 * 9 8 7 37 37 H 1.08003 * 119.52321 * 180.02562 * 10 9 8 38 38 H 1.07997 * 119.51807 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.14052 * 180.02562 * 12 11 10 40 40 H 1.08998 * 113.76731 * 41.05647 * 18 17 15 41 41 H 1.08998 * 113.77265 * 269.66208 * 18 17 15 42 42 H 0.96697 * 113.99897 * 178.07742 * 20 19 18 43 43 H 0.96992 * 120.00725 * 180.02562 * 24 23 21 44 44 H 1.08998 * 113.77456 * 90.37809 * 29 17 15 45 45 H 1.08999 * 113.83211 * 318.91598 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0568 2.4766 6 6 0.9153 -0.5744 3.4892 7 7 0.5613 0.0826 4.5700 8 6 0.8900 1.3727 4.6989 9 6 0.5213 2.1053 5.8408 10 6 0.8700 3.4165 5.9425 11 6 1.5900 4.0480 4.9294 12 6 1.9650 3.3708 3.8104 13 6 1.6230 2.0145 3.6692 14 7 1.9757 1.3227 2.5801 15 6 2.0322 -0.7104 -1.2305 16 8 2.1538 -1.9170 -1.2270 17 7 2.3464 -0.0046 -2.3349 18 6 2.9377 -0.3419 -3.6444 19 6 2.2175 0.9111 -4.1748 20 8 0.9056 0.6508 -4.6780 21 6 3.0541 1.7390 -5.1159 22 1 4.0489 1.4139 -5.3823 23 6 2.5516 2.9145 -5.6322 24 7 1.3402 3.3105 -5.3078 25 14 3.5915 3.9448 -6.7927 26 1 4.9065 3.2856 -6.9964 27 1 2.8952 4.0752 -8.0977 28 1 3.7999 5.2930 -6.2059 29 6 2.2347 1.4177 -2.7212 30 1 -0.3634 0.4319 -0.9325 31 1 -0.3634 -1.0236 0.0921 32 1 -0.3633 0.5915 0.8403 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 0.6453 -1.6147 3.3840 36 1 -0.0361 1.6292 6.6339 37 1 0.5855 3.9762 6.8213 38 1 1.8548 5.0897 5.0347 39 1 2.5229 3.8731 3.0340 40 1 2.5653 -1.2748 -4.0674 41 1 4.0249 -0.2668 -3.6680 42 1 0.4385 1.4398 -4.9850 43 1 0.9866 4.1373 -5.6714 44 1 3.1148 2.0109 -2.4731 45 1 1.3019 1.8871 -2.4085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556742500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:22 Heat of formation + Delta-G solvation = 10.741744 kcal Electronic energy + Delta-G solvation = -28904.615055 eV Core-core repulsion = 24888.168507 eV Total energy + Delta-G solvation = -4016.446547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.67109 -39.65776 -38.12338 -37.42741 -35.38268 -34.11893 -33.92359 -32.22489 -31.11810 -30.81395 -28.60503 -27.53305 -25.65510 -25.25072 -25.14062 -23.95564 -22.49370 -21.88173 -19.77503 -18.83055 -18.40331 -17.97677 -17.41694 -16.77440 -16.26738 -15.73987 -15.35498 -15.22609 -14.87396 -14.80458 -14.66843 -14.23716 -14.09653 -14.05028 -13.65486 -12.96991 -12.87796 -12.53968 -12.47856 -12.16706 -12.05310 -12.03058 -11.93574 -11.86147 -11.81059 -11.75093 -11.56984 -11.10689 -11.08595 -10.98167 -10.91575 -10.51067 -10.28751 -9.56929 -9.30058 -9.13072 -9.08461 -8.82191 -8.76486 -8.40429 -7.81951 -6.39443 -4.49529 -0.01957 0.31351 1.70619 2.52399 3.13202 3.18363 3.22973 3.26669 3.50973 3.74312 3.79135 3.90144 4.04230 4.18570 4.43915 4.52288 4.69900 4.81241 4.84702 4.87545 5.01178 5.08584 5.14055 5.17527 5.49703 5.55723 5.58834 5.62534 5.76155 5.79916 5.80930 5.85613 5.98104 5.98988 6.04870 6.13377 6.21194 6.29682 6.38767 6.42198 6.54619 6.64655 6.69605 7.07708 7.10259 7.54846 7.62821 7.82331 8.49893 8.53981 8.76420 9.21649 9.42082 10.67247 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.002657 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.039107 B =10534.739056 C =11971.551534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.098 0.902 4 C -0.051 4.051 5 C 0.119 3.881 6 C 0.085 3.915 7 N -0.425 5.425 8 C 0.068 3.932 9 C -0.083 4.083 10 C -0.103 4.103 11 C -0.101 4.101 12 C -0.082 4.082 13 C 0.086 3.914 14 N -0.421 5.421 15 C 0.535 3.465 16 O -0.566 6.566 17 N -0.630 5.630 18 C 0.111 3.889 19 C 0.238 3.762 20 O -0.572 6.572 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.072 3.928 24 N -0.898 5.898 25 Si 0.906 3.094 26 H -0.270 1.270 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.079 3.921 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.176 0.824 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.391 0.609 43 H 0.272 0.728 44 H 0.081 0.919 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 1.300 19.802 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 H 0.116 0.884 4 C -0.090 4.090 5 C -0.036 4.036 6 C -0.090 4.090 7 N -0.138 5.138 8 C -0.056 4.056 9 C -0.102 4.102 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.101 4.101 13 C -0.039 4.039 14 N -0.135 5.135 15 C 0.324 3.676 16 O -0.447 6.447 17 N -0.363 5.363 18 C -0.011 4.011 19 C 0.197 3.803 20 O -0.384 6.384 21 C -0.574 4.574 22 H 0.090 0.910 23 C -0.131 4.131 24 N -0.538 5.538 25 Si 0.734 3.266 26 H -0.195 1.195 27 H -0.207 1.207 28 H -0.207 1.207 29 C -0.043 4.043 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.193 0.807 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.246 0.754 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.129 0.302 20.222 20.256 hybrid contribution 0.335 1.350 -0.661 1.540 sum -0.794 1.652 19.562 19.647 Atomic orbital electron populations 1.21688 0.92869 1.02451 1.02462 1.21107 0.97663 1.01131 0.91835 0.88414 1.20456 1.02663 0.97809 0.88074 1.22563 0.93363 0.91050 0.96671 1.23971 0.94260 1.01508 0.89277 1.68704 1.16681 1.06524 1.21928 1.19615 0.98492 0.91393 0.96088 1.20785 0.99448 0.93876 0.96138 1.21000 0.97561 0.94523 0.99245 1.21020 0.97252 1.00597 0.93237 1.20883 0.99239 0.91456 0.98529 1.19634 0.97384 0.95695 0.91167 1.68549 1.17176 1.06902 1.20910 1.20028 0.77724 0.86931 0.82931 1.90618 1.56403 1.14170 1.83496 1.50245 1.60059 1.12082 1.13919 1.23442 0.97738 1.00334 0.79594 1.19850 0.82627 0.89270 0.88584 1.86063 1.29114 1.39567 1.83640 1.21537 1.01680 1.05886 1.28318 0.91035 1.25065 0.95218 0.97099 0.95684 1.69408 1.15938 1.23989 1.44424 0.86301 0.80346 0.79682 0.80318 1.19456 1.20665 1.20709 1.24339 1.00754 0.81144 0.98087 0.91475 0.91792 0.92741 0.88328 0.88995 0.80713 0.84472 0.84817 0.84709 0.84109 0.91161 0.89638 0.75429 0.91782 0.90041 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.90 37.15 0.33 -1.65 16 2 C -0.10 -1.48 2.50 -91.77 -0.23 -1.71 16 3 H 0.10 1.57 7.44 -51.93 -0.39 1.19 16 4 C -0.05 -0.66 4.67 -27.88 -0.13 -0.79 16 5 C 0.12 1.49 5.26 -82.27 -0.43 1.06 16 6 C 0.09 0.96 10.83 -17.23 -0.19 0.77 16 7 N -0.43 -5.27 10.47 -10.80 -0.11 -5.38 16 8 C 0.07 0.83 6.59 -84.80 -0.56 0.27 16 9 C -0.08 -0.78 9.98 -39.48 -0.39 -1.17 16 10 C -0.10 -0.76 9.95 -39.93 -0.40 -1.16 16 11 C -0.10 -0.78 9.95 -39.93 -0.40 -1.18 16 12 C -0.08 -0.85 9.98 -39.48 -0.39 -1.24 16 13 C 0.09 1.10 6.59 -84.80 -0.56 0.54 16 14 N -0.42 -5.83 9.89 -7.06 -0.07 -5.90 16 15 C 0.53 10.48 7.06 -10.98 -0.08 10.40 16 16 O -0.57 -12.41 17.10 5.56 0.10 -12.32 16 17 N -0.63 -13.14 3.61 -178.13 -0.64 -13.78 16 18 C 0.11 2.40 8.23 -2.97 -0.02 2.37 16 19 C 0.24 5.63 1.40 -90.85 -0.13 5.51 16 20 O -0.57 -14.53 13.49 -35.23 -0.48 -15.01 16 21 C -0.54 -13.28 8.61 -34.44 -0.30 -13.57 16 22 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 23 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 24 N -0.90 -22.44 11.21 55.43 0.62 -21.82 16 25 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 29 C 0.08 1.69 7.76 -2.84 -0.02 1.67 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.73 7.55 -51.93 -0.39 0.33 16 33 H 0.10 1.16 7.74 -51.93 -0.40 0.76 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.18 1.40 7.94 -52.49 -0.42 0.98 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 42 H 0.39 10.01 6.61 45.56 0.30 10.31 16 43 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 44 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16 45 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -30.01 382.80 -9.32 -39.33 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -5.49 Total: 13.05 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -3.99 Total: 1.79 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.21 Total: -46.88 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.38 Total: -27.33 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.01 -9.32 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556742500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.067 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds