Wall clock time and date at job start Wed Apr 1 2020 01:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47396 * 2 1 4 4 C 1.53003 * 109.47628 * 120.00420 * 2 1 3 5 5 C 1.50700 * 109.46820 * 295.00500 * 4 2 1 6 6 C 1.39673 * 119.64604 * 124.72673 * 5 4 2 7 7 N 1.31342 * 120.70648 * 179.74186 * 6 5 4 8 8 C 1.33758 * 119.70415 * 0.52250 * 7 6 5 9 9 C 1.40589 * 121.09253 * 179.73777 * 8 7 6 10 10 C 1.36056 * 119.71490 * 180.02562 * 9 8 7 11 11 C 1.39412 * 120.96740 * 359.97438 * 10 9 8 12 12 C 1.36063 * 120.96579 * 359.97438 * 11 10 9 13 13 C 1.40585 * 119.71775 * 0.02562 * 12 11 10 14 14 N 1.31336 * 119.64052 * 304.99459 * 5 4 2 15 15 C 1.50704 * 109.46906 * 240.00250 * 2 1 3 16 16 O 1.21276 * 120.00084 * 274.66616 * 15 2 1 17 17 N 1.34779 * 119.99720 * 94.67162 * 15 2 1 18 18 C 1.47584 * 134.49144 * 174.91150 * 17 15 2 19 19 C 1.53942 * 86.11483 * 155.35819 * 18 17 15 20 20 O 1.42904 * 113.74113 * 269.15446 * 19 18 17 21 21 C 1.50703 * 113.74131 * 137.95717 * 19 18 17 22 22 H 1.07996 * 119.99817 * 1.92063 * 21 19 18 23 23 C 1.37873 * 119.99925 * 182.19994 * 21 19 18 24 24 N 1.31512 * 120.00479 * 359.72033 * 23 21 19 25 25 Si 1.86804 * 120.00062 * 179.72269 * 23 21 19 26 26 H 1.48501 * 109.46788 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47196 * 119.99861 * 25 23 21 28 28 H 1.48503 * 109.47091 * 240.00129 * 25 23 21 29 29 C 1.47812 * 134.45847 * 354.78181 * 17 15 2 30 30 H 1.08998 * 109.47424 * 65.14890 * 1 2 3 31 31 H 1.09006 * 109.47286 * 185.14346 * 1 2 3 32 32 H 1.09000 * 109.47215 * 305.14219 * 1 2 3 33 33 H 1.09002 * 109.46834 * 54.99439 * 4 2 1 34 34 H 1.08993 * 109.47327 * 174.99927 * 4 2 1 35 35 H 1.07995 * 119.64828 * 359.97438 * 6 5 4 36 36 H 1.08000 * 120.14240 * 0.03863 * 9 8 7 37 37 H 1.08003 * 119.52321 * 180.02562 * 10 9 8 38 38 H 1.07997 * 119.51807 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.14052 * 180.02562 * 12 11 10 40 40 H 1.08998 * 113.76731 * 41.05647 * 18 17 15 41 41 H 1.08998 * 113.77265 * 269.66208 * 18 17 15 42 42 H 0.96697 * 113.99897 * 178.07742 * 20 19 18 43 43 H 0.96992 * 120.00725 * 180.02562 * 24 23 21 44 44 H 1.08998 * 113.77456 * 90.37809 * 29 17 15 45 45 H 1.08999 * 113.83211 * 318.91598 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0568 2.4766 6 6 0.9153 -0.5744 3.4892 7 7 0.5613 0.0826 4.5700 8 6 0.8900 1.3727 4.6989 9 6 0.5213 2.1053 5.8408 10 6 0.8700 3.4165 5.9425 11 6 1.5900 4.0480 4.9294 12 6 1.9650 3.3708 3.8104 13 6 1.6230 2.0145 3.6692 14 7 1.9757 1.3227 2.5801 15 6 2.0322 -0.7104 -1.2305 16 8 2.1538 -1.9170 -1.2270 17 7 2.3464 -0.0046 -2.3349 18 6 2.9377 -0.3419 -3.6444 19 6 2.2175 0.9111 -4.1748 20 8 0.9056 0.6508 -4.6780 21 6 3.0541 1.7390 -5.1159 22 1 4.0489 1.4139 -5.3823 23 6 2.5516 2.9145 -5.6322 24 7 1.3402 3.3105 -5.3078 25 14 3.5915 3.9448 -6.7927 26 1 4.9065 3.2856 -6.9964 27 1 2.8952 4.0752 -8.0977 28 1 3.7999 5.2930 -6.2059 29 6 2.2347 1.4177 -2.7212 30 1 -0.3634 0.4319 -0.9325 31 1 -0.3634 -1.0236 0.0921 32 1 -0.3633 0.5915 0.8403 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 0.6453 -1.6147 3.3840 36 1 -0.0361 1.6292 6.6339 37 1 0.5855 3.9762 6.8213 38 1 1.8548 5.0897 5.0347 39 1 2.5229 3.8731 3.0340 40 1 2.5653 -1.2748 -4.0674 41 1 4.0249 -0.2668 -3.6680 42 1 0.4385 1.4398 -4.9850 43 1 0.9866 4.1373 -5.6714 44 1 3.1148 2.0109 -2.4731 45 1 1.3019 1.8871 -2.4085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556742500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:20 Heat of formation + Delta-G solvation = -9.120034 kcal Electronic energy + Delta-G solvation = -28905.476326 eV Core-core repulsion = 24888.168507 eV Total energy + Delta-G solvation = -4017.307819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50761 -41.28665 -39.41976 -38.58659 -36.38713 -35.79407 -35.18437 -34.14958 -32.06898 -31.54844 -30.27339 -28.54878 -27.35680 -27.00661 -26.09049 -24.97155 -23.25006 -23.12674 -21.43967 -19.83168 -19.57529 -19.23803 -19.02822 -18.12602 -17.32428 -17.28141 -16.78678 -16.41509 -16.22272 -15.91564 -15.87686 -15.45663 -15.32294 -15.12293 -14.78541 -14.39291 -14.37015 -14.18506 -13.69031 -13.55801 -13.41867 -13.28759 -13.01195 -12.83669 -12.81984 -12.78539 -12.72111 -12.66762 -12.63013 -12.25130 -12.19700 -12.15661 -12.08120 -11.32380 -10.88619 -10.63245 -10.24512 -10.12757 -9.87788 -9.56508 -9.55707 -8.26215 -6.43062 -0.79920 -0.48634 0.90195 1.45027 1.49807 1.59221 1.60716 1.79475 1.96306 2.40874 2.86273 2.96609 2.97376 3.13216 3.20345 3.36215 3.61761 3.72612 3.86119 3.92278 3.94388 4.10028 4.17314 4.19591 4.30442 4.31817 4.40773 4.48335 4.59670 4.62603 4.65173 4.73743 4.80638 4.85740 4.89349 4.91362 4.96052 5.06354 5.10836 5.18720 5.22594 5.24816 5.37307 5.72972 5.75389 5.93304 6.23303 6.62751 6.68485 6.84776 7.13789 7.30589 7.43813 8.79840 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.002657 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.039107 B =10534.739056 C =11971.551534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 H 0.090 0.910 4 C -0.042 4.042 5 C 0.110 3.890 6 C 0.083 3.917 7 N -0.438 5.438 8 C 0.049 3.951 9 C -0.097 4.097 10 C -0.088 4.088 11 C -0.086 4.086 12 C -0.106 4.106 13 C 0.060 3.940 14 N -0.446 5.446 15 C 0.531 3.469 16 O -0.589 6.589 17 N -0.634 5.634 18 C 0.111 3.889 19 C 0.219 3.781 20 O -0.585 6.585 21 C -0.555 4.555 22 H 0.072 0.928 23 C 0.033 3.967 24 N -0.916 5.916 25 Si 0.967 3.033 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.277 1.277 29 C 0.095 3.905 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.204 0.796 36 H 0.152 0.848 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.141 0.859 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.387 0.613 43 H 0.275 0.725 44 H 0.089 0.911 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 2.620 21.777 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.107 4.107 3 H 0.109 0.891 4 C -0.081 4.081 5 C -0.046 4.046 6 C -0.092 4.092 7 N -0.152 5.152 8 C -0.075 4.075 9 C -0.116 4.116 10 C -0.108 4.108 11 C -0.106 4.106 12 C -0.125 4.125 13 C -0.064 4.064 14 N -0.161 5.161 15 C 0.322 3.678 16 O -0.471 6.471 17 N -0.367 5.367 18 C -0.011 4.011 19 C 0.178 3.822 20 O -0.397 6.397 21 C -0.593 4.593 22 H 0.090 0.910 23 C -0.168 4.168 24 N -0.556 5.556 25 Si 0.793 3.207 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.203 1.203 29 C -0.028 4.028 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.221 0.779 36 H 0.170 0.830 37 H 0.191 0.809 38 H 0.186 0.814 39 H 0.158 0.842 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.241 0.759 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.033 1.617 22.213 22.296 hybrid contribution 0.287 1.002 -1.205 1.594 sum -0.747 2.619 21.008 21.184 Atomic orbital electron populations 1.21619 0.91921 1.03130 1.01952 1.21055 0.98243 1.00456 0.90944 0.89125 1.20363 1.02386 0.98235 0.87089 1.22465 0.94306 0.90952 0.96858 1.24334 0.93643 1.02601 0.88599 1.68752 1.17215 1.06919 1.22302 1.20027 0.98800 0.91660 0.96986 1.21092 1.00018 0.94773 0.95724 1.21476 0.95476 0.93830 0.99972 1.21463 0.95316 1.01912 0.91869 1.21077 1.00535 0.90937 0.99985 1.19986 0.98415 0.96734 0.91299 1.68473 1.17914 1.07680 1.22002 1.20731 0.76812 0.86773 0.83441 1.90598 1.57291 1.15252 1.83986 1.50284 1.60395 1.11861 1.14179 1.23438 0.98577 0.99030 0.80087 1.20118 0.81941 0.90555 0.89549 1.86049 1.30089 1.39577 1.83954 1.21746 1.01922 1.06462 1.29127 0.91012 1.25739 0.96217 0.97975 0.96867 1.69473 1.16859 1.24307 1.44946 0.85357 0.78878 0.78229 0.78253 1.19195 1.20803 1.20257 1.24098 1.00801 0.81368 0.96534 0.93302 0.90827 0.91488 0.86933 0.89500 0.77945 0.82996 0.80929 0.81373 0.84167 0.92159 0.87910 0.75929 0.91533 0.89266 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 8.90 71.98 0.64 -3.05 16 2 C -0.09 -2.65 2.50 -11.54 -0.03 -2.68 16 3 H 0.09 2.96 7.44 -2.39 -0.02 2.94 16 4 C -0.04 -1.08 4.67 29.85 0.14 -0.94 16 5 C 0.11 2.73 5.26 42.98 0.23 2.95 16 6 C 0.08 1.81 10.83 85.11 0.92 2.73 16 7 N -0.44 -10.53 10.47 -188.09 -1.97 -12.50 16 8 C 0.05 1.16 6.59 40.29 0.27 1.42 16 9 C -0.10 -1.60 9.98 22.34 0.22 -1.38 16 10 C -0.09 -0.99 9.95 22.04 0.22 -0.77 16 11 C -0.09 -1.08 9.95 22.05 0.22 -0.87 16 12 C -0.11 -2.10 9.98 22.34 0.22 -1.87 16 13 C 0.06 1.52 6.59 40.29 0.27 1.78 16 14 N -0.45 -12.45 9.89 -176.25 -1.74 -14.19 16 15 C 0.53 20.94 7.06 87.66 0.62 21.56 16 16 O -0.59 -25.86 17.10 -3.02 -0.05 -25.91 16 17 N -0.63 -26.70 3.61 -839.69 -3.03 -29.73 16 18 C 0.11 4.85 8.23 86.48 0.71 5.56 16 19 C 0.22 10.51 1.40 -10.88 -0.02 10.49 16 20 O -0.59 -30.38 13.49 -148.98 -2.01 -32.39 16 21 C -0.55 -27.52 8.61 25.60 0.22 -27.30 16 22 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 23 C 0.03 1.60 5.40 84.65 0.46 2.06 16 24 N -0.92 -45.87 11.21 21.45 0.24 -45.63 16 25 Si 0.97 39.21 29.54 68.60 2.03 41.23 16 26 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 27 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 28 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 29 C 0.09 4.07 7.76 86.44 0.67 4.74 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.07 1.76 7.55 -2.39 -0.02 1.74 16 33 H 0.11 2.53 7.74 -2.39 -0.02 2.52 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.20 2.93 7.94 -2.91 -0.02 2.91 16 36 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 38 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.10 4.07 8.09 -2.39 -0.02 4.05 16 42 H 0.39 20.31 6.61 -74.06 -0.49 19.82 16 43 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 44 H 0.09 3.67 8.09 -2.39 -0.02 3.65 16 45 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -64.98 382.80 -0.03 -65.01 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: 0.53 Total: 39.67 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 5.98 Total: 14.44 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -6.50 Total: -102.05 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -2.06 Total: -58.30 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Total: -64.98 -0.03 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556742500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.890 kcal (2) G-P(sol) polarization free energy of solvation -64.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds