Wall clock time and date at job start Tue Mar 31 2020 23:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47694 * 2 1 4 4 C 1.50697 * 109.47028 * 239.99776 * 2 1 3 5 5 H 1.08008 * 119.99665 * 240.00486 * 4 2 1 6 6 C 1.37872 * 120.00502 * 60.00454 * 4 2 1 7 7 N 1.31514 * 119.99488 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00462 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46967 * 59.99794 * 8 6 4 10 10 H 1.48505 * 109.47012 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46891 * 299.99867 * 8 6 4 12 12 C 1.53006 * 109.46689 * 120.00081 * 2 1 3 13 13 S 1.81400 * 109.47018 * 299.99567 * 12 2 1 14 14 O 1.42095 * 110.54326 * 66.59274 * 13 12 2 15 15 O 1.42101 * 110.54581 * 289.84038 * 13 12 2 16 16 N 1.65603 * 104.44784 * 178.21741 * 13 12 2 17 17 C 1.46493 * 120.00008 * 62.43199 * 16 13 12 18 18 C 1.53004 * 109.47410 * 51.50766 * 17 16 13 19 19 C 1.53005 * 109.47271 * 171.50642 * 17 16 13 20 20 O 1.42898 * 109.47093 * 60.00011 * 19 17 16 21 21 C 1.50699 * 109.47352 * 291.50657 * 17 16 13 22 22 C 1.38239 * 119.99605 * 316.97853 * 21 17 16 23 23 C 1.38239 * 119.99872 * 179.76847 * 22 21 17 24 24 C 1.38235 * 119.99706 * 0.50358 * 23 22 21 25 25 C 1.38230 * 120.00275 * 359.74694 * 24 23 22 26 26 C 1.38233 * 120.00158 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.47271 * 300.00388 * 1 2 3 28 28 H 1.09006 * 109.47075 * 60.00155 * 1 2 3 29 29 H 1.08998 * 109.47691 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47480 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46733 * 300.00054 * 3 2 1 32 32 H 1.09005 * 109.47078 * 59.99494 * 3 2 1 33 33 H 0.97003 * 120.00103 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47020 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.47426 * 59.99936 * 12 2 1 36 36 H 0.96993 * 119.99686 * 242.70711 * 16 13 12 37 37 H 1.08993 * 109.46938 * 52.15681 * 18 17 16 38 38 H 1.09003 * 109.47378 * 172.16170 * 18 17 16 39 39 H 1.09003 * 109.46402 * 292.16065 * 18 17 16 40 40 H 1.08997 * 109.46985 * 180.02562 * 19 17 16 41 41 H 1.09006 * 109.46557 * 299.99992 * 19 17 16 42 42 H 0.96701 * 114.00245 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.00023 * 359.97438 * 22 21 17 44 44 H 1.07995 * 120.00331 * 180.22887 * 23 22 21 45 45 H 1.08002 * 119.99933 * 179.72981 * 24 23 22 46 46 H 1.08002 * 120.00447 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.00514 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0079 9 1 1.8257 -2.5204 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8063 -1.1212 -4.0080 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0228 0.0165 2.8323 15 8 2.0782 1.3927 2.8768 16 7 2.0122 -0.7687 3.9932 17 6 3.4566 -0.9107 4.1923 18 6 4.1092 0.4732 4.1981 19 6 3.7213 -1.6049 5.5298 20 8 3.1119 -2.8974 5.5245 21 6 4.0392 -1.7360 3.0741 22 6 3.3838 -2.8735 2.6408 23 6 3.9157 -3.6280 1.6118 24 6 5.1082 -3.2508 1.0231 25 6 5.7662 -2.1163 1.4599 26 6 5.2319 -1.3592 2.4857 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7083 1.1608 -3.4844 34 1 3.1299 -0.7209 1.2496 35 1 1.6765 -1.7489 1.2493 36 1 1.3938 -1.2067 4.5987 37 1 3.5938 1.1149 4.9126 38 1 5.1570 0.3797 4.4836 39 1 4.0416 0.9108 3.2021 40 1 4.7960 -1.7101 5.6781 41 1 3.3000 -1.0079 6.3387 42 1 3.2391 -3.3957 6.3434 43 1 2.4546 -3.1708 3.1039 44 1 3.4018 -4.5145 1.2708 45 1 5.5260 -3.8426 0.2221 46 1 6.6981 -1.8218 1.0003 47 1 5.7462 -0.4730 2.8272 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590747793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:24 Heat of formation + Delta-G solvation = -87.319717 kcal Electronic energy + Delta-G solvation = -30782.282031 eV Core-core repulsion = 26864.734420 eV Total energy + Delta-G solvation = -3917.547611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.99150 -37.44406 -36.49864 -36.15384 -35.38319 -35.08870 -31.62438 -31.32867 -30.46898 -29.16253 -26.62694 -26.18113 -25.64560 -25.14785 -23.10050 -22.12686 -20.23242 -19.44257 -18.52405 -17.60813 -17.34507 -17.11655 -15.99555 -15.84175 -15.29957 -15.02589 -14.71506 -14.67823 -14.65522 -14.27018 -13.68470 -13.21048 -13.07505 -12.97021 -12.71422 -12.64192 -12.42866 -12.37998 -12.09200 -11.97625 -11.64000 -11.38368 -11.13938 -11.05845 -11.00033 -10.89079 -10.74881 -10.60286 -10.50181 -10.33293 -10.22761 -10.18906 -9.99814 -9.63558 -9.57828 -9.19673 -8.65558 -8.58110 -8.45441 -8.33182 -5.96340 -4.06864 0.99592 1.49370 1.65745 3.25579 3.30097 3.35431 3.37126 3.90753 4.08248 4.36337 4.44799 4.54974 4.80829 4.90421 5.03265 5.14543 5.21692 5.22555 5.29056 5.33768 5.41215 5.49481 5.69022 5.75048 5.84943 5.88035 5.94032 6.10938 6.18531 6.29128 6.41963 6.51992 6.68081 6.75953 6.80364 6.80755 6.87249 6.98345 7.09399 7.19885 7.25149 7.39381 7.43724 7.58121 7.75167 8.04543 8.17694 8.41694 8.91578 9.57542 11.05127 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.005584 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.648417 B = 5013.044517 C = 6237.520105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 C -0.161 4.161 4 C -0.493 4.493 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.576 4.576 13 S 2.589 3.411 14 O -0.970 6.970 15 O -0.965 6.965 16 N -1.114 6.114 17 C 0.227 3.773 18 C -0.176 4.176 19 C 0.087 3.913 20 O -0.562 6.562 21 C -0.117 4.117 22 C -0.077 4.077 23 C -0.120 4.120 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.112 4.112 27 H 0.028 0.972 28 H 0.094 0.906 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.094 0.906 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.377 0.623 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 -6.824 15.270 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.083 3.917 3 C -0.218 4.218 4 C -0.532 4.532 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.710 4.710 13 S 2.688 3.312 14 O -0.960 6.960 15 O -0.955 6.955 16 N -0.870 5.870 17 C 0.137 3.863 18 C -0.234 4.234 19 C 0.007 3.993 20 O -0.367 6.367 21 C -0.119 4.119 22 C -0.096 4.096 23 C -0.138 4.138 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.130 4.130 27 H 0.047 0.953 28 H 0.112 0.888 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.248 0.752 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.224 0.776 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.181 -5.608 14.552 17.611 hybrid contribution 0.614 -1.480 -0.409 1.653 sum 8.794 -7.087 14.143 18.100 Atomic orbital electron populations 1.22297 0.97174 1.00525 1.02282 1.17896 0.92567 0.92023 0.89262 1.22238 0.99599 0.97957 1.02041 1.20888 1.31232 1.11860 0.89260 0.92354 1.24916 0.95030 0.95010 0.98777 1.69796 1.36534 1.22724 1.23370 0.86649 0.79118 0.79750 0.82403 1.20363 1.21297 1.20356 1.30725 1.11760 1.12367 1.16142 1.05691 0.74188 0.75437 0.75862 1.93536 1.29489 1.86979 1.86024 1.93532 1.76555 1.40000 1.85371 1.55850 1.12292 1.71205 1.47625 1.18926 0.80411 0.94297 0.92640 1.22620 1.00269 0.94121 1.06428 1.22330 0.97050 0.84351 0.95546 1.86523 1.78634 1.29228 1.42329 1.20091 0.96484 0.97178 0.98123 1.20969 0.99567 0.93502 0.95519 1.21128 0.96035 1.00156 0.96529 1.21151 0.95465 0.96927 0.99039 1.21062 1.00267 0.95385 0.97199 1.21126 0.95606 0.99677 0.96641 0.95305 0.88763 0.94641 0.94560 0.88744 0.95730 0.92843 0.85822 0.86509 0.75195 0.90710 0.91380 0.88588 0.92333 0.92606 0.77576 0.85612 0.86223 0.86392 0.86181 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 7.77 37.16 0.29 -3.91 16 2 C 0.08 2.09 0.52 -155.66 -0.08 2.01 16 3 C -0.16 -4.01 7.78 37.15 0.29 -3.72 16 4 C -0.49 -13.06 8.01 -34.44 -0.28 -13.34 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -24.48 9.35 55.43 0.52 -23.96 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C -0.58 -11.84 3.09 37.16 0.11 -11.73 16 13 S 2.59 50.21 4.38 -107.50 -0.47 49.74 16 14 O -0.97 -21.51 15.56 -57.54 -0.90 -22.40 16 15 O -0.96 -20.05 12.39 -57.54 -0.71 -20.76 16 16 N -1.11 -16.27 4.77 -0.40 0.00 -16.27 16 17 C 0.23 2.86 0.79 -132.97 -0.11 2.76 16 18 C -0.18 -2.22 5.99 37.16 0.22 -2.00 16 19 C 0.09 0.80 5.97 37.16 0.22 1.02 16 20 O -0.56 -5.08 11.69 -35.23 -0.41 -5.49 16 21 C -0.12 -1.60 2.55 -104.62 -0.27 -1.86 16 22 C -0.08 -1.09 5.77 -39.58 -0.23 -1.32 16 23 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 24 C -0.11 -1.47 10.05 -39.59 -0.40 -1.86 16 25 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 26 C -0.11 -1.48 8.25 -39.58 -0.33 -1.81 16 27 H 0.03 0.70 5.38 -51.93 -0.28 0.42 16 28 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 29 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 32 H 0.02 0.58 5.55 -51.93 -0.29 0.29 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.12 2.43 5.43 -51.92 -0.28 2.15 16 35 H 0.12 2.29 7.01 -51.93 -0.36 1.93 16 36 H 0.41 5.38 8.34 -34.47 -0.29 5.09 16 37 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.07 0.64 7.28 -51.93 -0.38 0.26 16 39 H 0.10 1.46 5.94 -51.93 -0.31 1.15 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.38 1.70 9.12 45.56 0.42 2.11 16 43 H 0.13 1.74 7.34 -52.49 -0.39 1.36 16 44 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.13 1.42 6.14 -52.49 -0.32 1.10 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -32.99 361.30 -9.01 -42.00 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -6.03 Total: 14.02 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: -1.43 Total: -38.22 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.52 Total: -40.23 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -2.02 Total: -48.66 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 50.21 SS G_CDS: -0.47 Total: 49.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.99 -9.01 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590747793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.323 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds