Wall clock time and date at job start Tue Mar 31 2020 23:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47694 * 2 1 4 4 C 1.50697 * 109.47028 * 239.99776 * 2 1 3 5 5 H 1.08008 * 119.99665 * 240.00486 * 4 2 1 6 6 C 1.37872 * 120.00502 * 60.00454 * 4 2 1 7 7 N 1.31514 * 119.99488 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00462 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46967 * 59.99794 * 8 6 4 10 10 H 1.48505 * 109.47012 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46891 * 299.99867 * 8 6 4 12 12 C 1.53006 * 109.46689 * 120.00081 * 2 1 3 13 13 S 1.81400 * 109.47018 * 299.99567 * 12 2 1 14 14 O 1.42095 * 110.54326 * 66.59274 * 13 12 2 15 15 O 1.42101 * 110.54581 * 289.84038 * 13 12 2 16 16 N 1.65603 * 104.44784 * 178.21741 * 13 12 2 17 17 C 1.46493 * 120.00008 * 62.43199 * 16 13 12 18 18 C 1.53004 * 109.47410 * 51.50766 * 17 16 13 19 19 C 1.53005 * 109.47271 * 171.50642 * 17 16 13 20 20 O 1.42898 * 109.47093 * 60.00011 * 19 17 16 21 21 C 1.50699 * 109.47352 * 291.50657 * 17 16 13 22 22 C 1.38239 * 119.99605 * 316.97853 * 21 17 16 23 23 C 1.38239 * 119.99872 * 179.76847 * 22 21 17 24 24 C 1.38235 * 119.99706 * 0.50358 * 23 22 21 25 25 C 1.38230 * 120.00275 * 359.74694 * 24 23 22 26 26 C 1.38233 * 120.00158 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.47271 * 300.00388 * 1 2 3 28 28 H 1.09006 * 109.47075 * 60.00155 * 1 2 3 29 29 H 1.08998 * 109.47691 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47480 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46733 * 300.00054 * 3 2 1 32 32 H 1.09005 * 109.47078 * 59.99494 * 3 2 1 33 33 H 0.97003 * 120.00103 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47020 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.47426 * 59.99936 * 12 2 1 36 36 H 0.96993 * 119.99686 * 242.70711 * 16 13 12 37 37 H 1.08993 * 109.46938 * 52.15681 * 18 17 16 38 38 H 1.09003 * 109.47378 * 172.16170 * 18 17 16 39 39 H 1.09003 * 109.46402 * 292.16065 * 18 17 16 40 40 H 1.08997 * 109.46985 * 180.02562 * 19 17 16 41 41 H 1.09006 * 109.46557 * 299.99992 * 19 17 16 42 42 H 0.96701 * 114.00245 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.00023 * 359.97438 * 22 21 17 44 44 H 1.07995 * 120.00331 * 180.22887 * 23 22 21 45 45 H 1.08002 * 119.99933 * 179.72981 * 24 23 22 46 46 H 1.08002 * 120.00447 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.00514 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0079 9 1 1.8257 -2.5204 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8063 -1.1212 -4.0080 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0228 0.0165 2.8323 15 8 2.0782 1.3927 2.8768 16 7 2.0122 -0.7687 3.9932 17 6 3.4566 -0.9107 4.1923 18 6 4.1092 0.4732 4.1981 19 6 3.7213 -1.6049 5.5298 20 8 3.1119 -2.8974 5.5245 21 6 4.0392 -1.7360 3.0741 22 6 3.3838 -2.8735 2.6408 23 6 3.9157 -3.6280 1.6118 24 6 5.1082 -3.2508 1.0231 25 6 5.7662 -2.1163 1.4599 26 6 5.2319 -1.3592 2.4857 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7083 1.1608 -3.4844 34 1 3.1299 -0.7209 1.2496 35 1 1.6765 -1.7489 1.2493 36 1 1.3938 -1.2067 4.5987 37 1 3.5938 1.1149 4.9126 38 1 5.1570 0.3797 4.4836 39 1 4.0416 0.9108 3.2021 40 1 4.7960 -1.7101 5.6781 41 1 3.3000 -1.0079 6.3387 42 1 3.2391 -3.3957 6.3434 43 1 2.4546 -3.1708 3.1039 44 1 3.4018 -4.5145 1.2708 45 1 5.5260 -3.8426 0.2221 46 1 6.6981 -1.8218 1.0003 47 1 5.7462 -0.4730 2.8272 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590747793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:23 Heat of formation + Delta-G solvation = -110.964688 kcal Electronic energy + Delta-G solvation = -30783.307354 eV Core-core repulsion = 26864.734420 eV Total energy + Delta-G solvation = -3918.572934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.98183 -38.45162 -38.04496 -37.97559 -36.88206 -36.13334 -33.61449 -32.42415 -31.53875 -30.16916 -28.21682 -27.68343 -27.21412 -27.14575 -24.06403 -23.14156 -21.45064 -21.15981 -19.99302 -18.82639 -18.42316 -18.03916 -17.84061 -17.06973 -16.85742 -16.65758 -16.23718 -15.82948 -15.65816 -15.26877 -14.99922 -14.71057 -14.52291 -14.44642 -14.16976 -13.86472 -13.81763 -13.66615 -13.39199 -13.36927 -13.01814 -12.86525 -12.76561 -12.67332 -12.61477 -12.46624 -12.19689 -12.16111 -12.09762 -11.95475 -11.75632 -11.56216 -11.54583 -11.35354 -10.86685 -10.67950 -10.39107 -10.36926 -9.66474 -9.50718 -7.99849 -6.16847 -0.55449 0.46921 0.63149 1.44549 1.44815 1.51998 1.90245 2.45565 2.84741 2.94633 3.22104 3.28527 3.40637 3.63328 3.87551 4.01490 4.13973 4.20271 4.26037 4.33631 4.37155 4.48578 4.62048 4.64438 4.67655 4.72439 4.79898 4.87336 4.89962 4.94474 5.01032 5.08297 5.09882 5.20041 5.28571 5.39014 5.43598 5.52705 5.67128 5.67722 5.74167 5.78146 5.98482 6.13461 6.15392 6.21039 6.38471 6.86661 7.02181 7.50280 9.00109 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.005584 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.648417 B = 5013.044517 C = 6237.520105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.075 3.925 3 C -0.154 4.154 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.574 4.574 13 S 2.607 3.393 14 O -1.001 7.001 15 O -0.979 6.979 16 N -1.098 6.098 17 C 0.218 3.782 18 C -0.180 4.180 19 C 0.092 3.908 20 O -0.579 6.579 21 C -0.123 4.123 22 C -0.090 4.090 23 C -0.136 4.136 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.121 4.121 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.424 0.576 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.398 0.602 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.138 0.862 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.527 -7.823 16.609 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.073 3.927 3 C -0.212 4.212 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.548 5.548 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.197 1.197 12 C -0.707 4.707 13 S 2.705 3.295 14 O -0.991 6.991 15 O -0.969 6.969 16 N -0.858 5.858 17 C 0.130 3.870 18 C -0.239 4.239 19 C 0.012 3.988 20 O -0.388 6.388 21 C -0.124 4.124 22 C -0.108 4.108 23 C -0.154 4.154 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.139 4.139 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.260 0.740 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.248 0.752 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.156 0.844 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.844 -6.626 15.901 19.840 hybrid contribution 0.130 -1.195 -0.757 1.421 sum 9.974 -7.821 15.143 19.747 Atomic orbital electron populations 1.22234 0.98163 1.00196 1.01305 1.17872 0.91885 0.92061 0.90874 1.22144 0.99692 0.98288 1.01107 1.21164 1.31154 1.11943 0.90206 0.92280 1.25617 0.95288 0.95661 1.01422 1.69934 1.37358 1.23785 1.23726 0.85749 0.78820 0.78735 0.79142 1.19919 1.21353 1.19650 1.30634 1.12229 1.12343 1.15476 1.04872 0.73247 0.75363 0.75994 1.93487 1.31621 1.87474 1.86509 1.93521 1.76613 1.41160 1.85574 1.55430 1.13827 1.70646 1.45862 1.19247 0.78541 0.94798 0.94452 1.22637 1.02575 0.93790 1.04848 1.22282 0.98464 0.84506 0.93520 1.86470 1.78801 1.29336 1.44150 1.20236 0.96724 0.97070 0.98410 1.21049 0.99790 0.94038 0.95910 1.21352 0.96506 1.00700 0.96801 1.21419 0.95542 0.97458 0.99530 1.21381 1.00993 0.95212 0.97238 1.21419 0.95684 1.00233 0.96556 0.95022 0.90933 0.94579 0.94185 0.91030 0.95241 0.93035 0.84970 0.85918 0.73992 0.90751 0.87953 0.91317 0.90211 0.90916 0.75194 0.85771 0.85451 0.85111 0.84385 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.33 7.77 71.98 0.56 -7.78 16 2 C 0.08 3.72 0.52 -52.93 -0.03 3.70 16 3 C -0.15 -7.81 7.78 71.98 0.56 -7.25 16 4 C -0.51 -26.78 8.01 25.60 0.21 -26.57 16 5 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 6 C 0.02 1.03 5.15 84.65 0.44 1.46 16 7 N -0.91 -51.01 9.35 21.45 0.20 -50.81 16 8 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 C -0.57 -23.36 3.09 71.98 0.22 -23.14 16 13 S 2.61 99.51 4.38 -56.49 -0.25 99.26 16 14 O -1.00 -44.18 15.56 -127.65 -1.99 -46.16 16 15 O -0.98 -40.12 12.39 -127.65 -1.58 -41.70 16 16 N -1.10 -30.26 4.77 -155.19 -0.74 -31.00 16 17 C 0.22 4.98 0.79 2.86 0.00 4.99 16 18 C -0.18 -4.11 5.99 71.98 0.43 -3.68 16 19 C 0.09 1.38 5.97 71.98 0.43 1.81 16 20 O -0.58 -8.78 11.69 -148.98 -1.74 -10.52 16 21 C -0.12 -3.11 2.55 -19.86 -0.05 -3.16 16 22 C -0.09 -2.42 5.77 22.27 0.13 -2.29 16 23 C -0.14 -3.65 10.05 22.27 0.22 -3.42 16 24 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 25 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 26 C -0.12 -2.93 8.25 22.27 0.18 -2.74 16 27 H 0.03 1.57 5.38 -2.38 -0.01 1.56 16 28 H 0.07 4.05 6.07 -2.38 -0.01 4.03 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 3.93 6.07 -2.38 -0.01 3.92 16 32 H 0.03 1.41 5.55 -2.38 -0.01 1.40 16 33 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.13 5.10 5.43 -2.39 -0.01 5.09 16 35 H 0.12 4.78 7.01 -2.39 -0.02 4.76 16 36 H 0.42 10.23 8.34 -96.75 -0.81 9.42 16 37 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.10 1.57 7.28 -2.39 -0.02 1.55 16 39 H 0.07 1.98 5.94 -2.39 -0.01 1.96 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.40 2.33 9.12 -74.06 -0.68 1.65 16 43 H 0.12 3.30 7.34 -2.91 -0.02 3.28 16 44 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 45 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 46 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 47 H 0.14 2.85 6.14 -2.91 -0.02 2.83 16 Total: -1.00 -70.47 361.30 -0.80 -71.27 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.48 Total: 38.82 kcal Atomic # 6 Polarization: -77.71 SS G_CDS: 3.75 Total: -73.96 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -0.54 Total: -81.80 kcal Atomic # 8 Polarization: -93.08 SS G_CDS: -5.31 Total: -98.39 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 99.51 SS G_CDS: -0.25 Total: 99.26 kcal Total: -70.47 -0.80 -71.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590747793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.697 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds