Wall clock time and date at job start Wed Apr 1 2020 00:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47354 * 2 1 4 4 C 1.50703 * 109.47401 * 120.00061 * 2 1 3 5 5 C 1.38235 * 119.99791 * 59.72389 * 4 2 1 6 6 C 1.38235 * 120.00008 * 179.81488 * 5 4 2 7 7 C 1.38238 * 120.00133 * 0.39431 * 6 5 4 8 8 C 1.38237 * 119.99445 * 359.86273 * 7 6 5 9 9 C 1.38229 * 120.00497 * 359.95088 * 8 7 6 10 10 C 1.52998 * 109.47316 * 239.99899 * 2 1 3 11 11 H 1.08998 * 109.46991 * 300.00323 * 10 2 1 12 12 O 1.42902 * 109.47471 * 179.97438 * 10 2 1 13 13 C 1.53005 * 109.46989 * 60.00097 * 10 2 1 14 14 N 1.46493 * 109.47062 * 184.99848 * 13 10 2 15 15 S 1.65608 * 119.99916 * 164.99917 * 14 13 10 16 16 O 1.42102 * 104.27862 * 180.79934 * 15 14 13 17 17 O 1.42098 * 104.27532 * 308.65568 * 15 14 13 18 18 C 1.81401 * 104.44690 * 64.72499 * 15 14 13 19 19 C 1.53001 * 109.46754 * 179.97438 * 18 15 14 20 20 C 1.53005 * 109.46695 * 179.97438 * 19 18 15 21 21 C 1.50702 * 109.46586 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00755 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99774 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00026 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46961 * 89.99634 * 25 23 21 27 27 H 1.48496 * 109.47226 * 209.99899 * 25 23 21 28 28 H 1.48501 * 109.46914 * 329.99931 * 25 23 21 29 29 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47334 * 300.00019 * 1 2 3 31 31 H 1.08996 * 109.47314 * 59.99924 * 1 2 3 32 32 H 1.08001 * 119.99824 * 0.02562 * 5 4 2 33 33 H 1.07999 * 120.00406 * 180.23444 * 6 5 4 34 34 H 1.07993 * 120.00223 * 179.83088 * 7 6 5 35 35 H 1.08006 * 119.99454 * 179.97438 * 8 7 6 36 36 H 1.08005 * 120.00456 * 180.02562 * 9 8 7 37 37 H 0.96704 * 114.00035 * 300.00448 * 12 10 2 38 38 H 1.09002 * 109.46785 * 64.99783 * 13 10 2 39 39 H 1.08994 * 109.46912 * 305.00363 * 13 10 2 40 40 H 0.97000 * 120.00740 * 344.72579 * 14 13 10 41 41 H 1.08996 * 109.47201 * 299.99843 * 18 15 14 42 42 H 1.08997 * 109.46951 * 60.00554 * 18 15 14 43 43 H 1.08997 * 109.47212 * 300.00514 * 19 18 15 44 44 H 1.08997 * 109.46811 * 60.00625 * 19 18 15 45 45 H 1.08996 * 109.47312 * 300.00032 * 20 19 18 46 46 H 1.08997 * 109.46899 * 60.00779 * 20 19 18 47 47 H 0.97000 * 120.00376 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6937 -2.0322 1.4521 6 6 2.1577 -2.6850 2.5788 7 6 2.9536 -2.0137 3.4880 8 6 3.2878 -0.6903 3.2691 9 6 2.8270 -0.0386 2.1405 10 6 2.0400 -0.7213 -1.2492 11 1 1.6766 -1.7489 -1.2492 12 8 3.4690 -0.7208 -1.2495 13 6 1.5300 0.0000 -2.4985 14 7 1.9176 -0.7565 -3.6916 15 16 1.2001 -0.4305 -5.1481 16 8 1.7998 -1.3521 -6.0483 17 8 -0.1928 -0.4779 -4.8710 18 6 1.7145 1.2651 -5.5365 19 6 1.1089 1.6874 -6.8766 20 6 1.5423 3.1179 -7.2038 21 6 0.9452 3.5340 -8.5235 22 1 0.3197 2.8470 -9.0739 23 6 1.1985 4.7917 -9.0287 24 7 1.9607 5.6283 -8.3587 25 14 0.4591 5.3074 -10.6648 26 1 -0.8649 5.9386 -10.4326 27 1 1.3614 6.2806 -11.3310 28 1 0.2929 4.1129 -11.5313 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.0694 -2.5558 0.7432 33 1 1.8962 -3.7188 2.7500 34 1 3.3138 -2.5229 4.3696 35 1 3.9093 -0.1657 3.9797 36 1 3.0885 0.9952 1.9692 37 1 3.8620 0.1628 -1.2497 38 1 1.9646 0.9986 -2.5443 39 1 0.4437 0.0783 -2.4548 40 1 2.5973 -1.4457 -3.6293 41 1 1.3682 1.9385 -4.7525 42 1 2.8018 1.3095 -5.5995 43 1 1.4556 1.0140 -7.6603 44 1 0.0216 1.6430 -6.8140 45 1 1.1952 3.7910 -6.4200 46 1 2.6295 3.1628 -7.2663 47 1 2.1386 6.5132 -8.7139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595381485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:58 Heat of formation + Delta-G solvation = -124.347257 kcal Electronic energy + Delta-G solvation = -27051.030502 eV Core-core repulsion = 23131.877256 eV Total energy + Delta-G solvation = -3919.153246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.15924 -38.25132 -36.89397 -35.77275 -34.69289 -34.62048 -34.39326 -32.20626 -31.22292 -30.12852 -27.83414 -27.55482 -24.80215 -23.75165 -23.18413 -22.30961 -20.83000 -20.51987 -19.18243 -17.78294 -17.49102 -16.97550 -16.57594 -16.42167 -15.75210 -15.68541 -15.32960 -15.04738 -14.83139 -14.58231 -14.49319 -14.24456 -13.94675 -13.62914 -13.31530 -13.03598 -12.71626 -12.60788 -12.35016 -12.26116 -12.03206 -11.96307 -11.88744 -11.84211 -11.79170 -11.47243 -11.29849 -11.25259 -10.97998 -10.93573 -10.86816 -10.45946 -10.27420 -9.97514 -9.76230 -9.34770 -9.21159 -9.11151 -8.97024 -8.42640 -6.07666 -4.10679 0.44479 1.05806 1.10940 2.80834 3.29176 3.35376 3.39548 3.47218 3.89521 4.00155 4.10047 4.30751 4.40269 4.41008 4.57820 4.65897 4.69254 4.74287 4.81695 4.91436 4.99924 5.06914 5.14838 5.17236 5.21527 5.25422 5.28931 5.44876 5.48843 5.62161 5.68322 5.73104 5.74939 5.86108 5.88869 6.16790 6.21975 6.24566 6.31138 6.42361 6.70118 6.84435 6.90600 7.29049 7.54487 7.64364 7.90315 8.30799 8.95548 9.54123 11.03520 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.002021 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.499468 B =13851.096916 C =14538.528495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.086 0.914 4 C -0.063 4.063 5 C -0.112 4.112 6 C -0.118 4.118 7 C -0.126 4.126 8 C -0.119 4.119 9 C -0.115 4.115 10 C 0.111 3.889 11 H 0.108 0.892 12 O -0.551 6.551 13 C 0.078 3.922 14 N -1.120 6.120 15 S 2.601 3.399 16 O -0.962 6.962 17 O -0.963 6.963 18 C -0.609 4.609 19 C -0.106 4.106 20 C 0.031 3.969 21 C -0.526 4.526 22 H 0.058 0.942 23 C 0.057 3.943 24 N -0.895 5.895 25 Si 0.895 3.105 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.273 1.273 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.376 0.624 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.419 0.581 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -13.126 25.083 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.105 0.895 4 C -0.063 4.063 5 C -0.130 4.130 6 C -0.136 4.136 7 C -0.145 4.145 8 C -0.137 4.137 9 C -0.133 4.133 10 C 0.050 3.950 11 H 0.126 0.874 12 O -0.356 6.356 13 C -0.050 4.050 14 N -0.879 5.879 15 S 2.697 3.303 16 O -0.953 6.953 17 O -0.953 6.953 18 C -0.741 4.741 19 C -0.146 4.146 20 C -0.008 4.008 21 C -0.565 4.565 22 H 0.076 0.924 23 C -0.144 4.144 24 N -0.534 5.534 25 Si 0.722 3.278 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.223 0.777 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.253 0.747 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.039 0.961 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.244 -14.085 24.593 28.368 hybrid contribution 0.440 1.376 -0.545 1.544 sum 1.683 -12.709 24.048 27.252 Atomic orbital electron populations 1.21943 0.93061 1.02954 1.02944 1.20899 0.97221 0.99735 0.92627 0.89520 1.19612 0.97183 0.94170 0.95325 1.20977 1.00124 0.94317 0.97604 1.21129 0.98008 0.99819 0.94644 1.21136 0.98882 0.94944 0.99492 1.21124 0.99973 0.94973 0.97606 1.21040 0.97952 0.99813 0.94484 1.22175 0.81360 1.00636 0.90845 0.87400 1.86626 1.18371 1.33874 1.96740 1.22145 1.01864 0.95150 0.85793 1.55618 1.57931 1.50569 1.23739 1.05282 0.74529 0.77808 0.72674 1.93584 1.78207 1.60429 1.63046 1.93561 1.31189 1.87033 1.83526 1.30544 1.12060 1.22060 1.09409 1.21503 0.99815 1.02956 0.90287 1.19061 0.96964 0.87954 0.96776 1.21257 1.30740 0.99256 1.05214 0.92353 1.25026 0.95145 0.96610 0.97630 1.69954 1.37543 1.07284 1.38658 0.86547 0.78997 0.78495 0.83722 1.20572 1.21168 1.19739 0.91915 0.91824 0.91156 0.86233 0.86213 0.86334 0.86226 0.86208 0.77700 0.91217 0.88840 0.74679 0.85652 0.85274 0.91541 0.91563 0.96165 0.96125 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.66 37.15 0.32 -0.64 16 2 C -0.09 -0.55 2.34 -91.78 -0.21 -0.76 16 3 H 0.09 0.46 7.88 -51.93 -0.41 0.05 16 4 C -0.06 -0.48 4.43 -104.62 -0.46 -0.94 16 5 C -0.11 -0.88 8.71 -39.58 -0.34 -1.23 16 6 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 7 C -0.13 -0.92 10.05 -39.58 -0.40 -1.31 16 8 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 9 C -0.11 -0.85 9.67 -39.58 -0.38 -1.23 16 10 C 0.11 0.81 2.46 -26.73 -0.07 0.75 16 11 H 0.11 0.85 7.40 -51.93 -0.38 0.47 16 12 O -0.55 -4.39 12.76 -35.23 -0.45 -4.84 16 13 C 0.08 0.64 5.55 -4.04 -0.02 0.62 16 14 N -1.12 -11.49 5.85 -10.62 -0.06 -11.55 16 15 S 2.60 36.86 5.46 -107.50 -0.59 36.27 16 16 O -0.96 -16.82 18.08 -57.54 -1.04 -17.86 16 17 O -0.96 -16.25 17.51 -57.54 -1.01 -17.26 16 18 C -0.61 -9.00 6.07 37.16 0.23 -8.77 16 19 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 20 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 21 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 22 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 25 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 6.32 -51.93 -0.33 0.11 16 32 H 0.12 0.82 7.10 -52.49 -0.37 0.45 16 33 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 36 H 0.12 0.70 7.95 -52.48 -0.42 0.28 16 37 H 0.38 1.89 9.05 45.56 0.41 2.30 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.79 5.73 -51.93 -0.30 0.49 16 40 H 0.42 3.96 8.47 -34.47 -0.29 3.67 16 41 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -36.28 399.17 -10.91 -47.19 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.66 Total: 2.43 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -2.83 Total: -31.22 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.67 Total: -37.20 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -2.50 Total: -39.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 36.86 SS G_CDS: -0.59 Total: 36.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.28 -10.91 -47.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595381485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.156 kcal (2) G-P(sol) polarization free energy of solvation -36.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds