Wall clock time and date at job start Wed Apr 1 2020 00:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47354 * 2 1 4 4 C 1.50703 * 109.47401 * 120.00061 * 2 1 3 5 5 C 1.38235 * 119.99791 * 59.72389 * 4 2 1 6 6 C 1.38235 * 120.00008 * 179.81488 * 5 4 2 7 7 C 1.38238 * 120.00133 * 0.39431 * 6 5 4 8 8 C 1.38237 * 119.99445 * 359.86273 * 7 6 5 9 9 C 1.38229 * 120.00497 * 359.95088 * 8 7 6 10 10 C 1.52998 * 109.47316 * 239.99899 * 2 1 3 11 11 H 1.08998 * 109.46991 * 300.00323 * 10 2 1 12 12 O 1.42902 * 109.47471 * 179.97438 * 10 2 1 13 13 C 1.53005 * 109.46989 * 60.00097 * 10 2 1 14 14 N 1.46493 * 109.47062 * 184.99848 * 13 10 2 15 15 S 1.65608 * 119.99916 * 164.99917 * 14 13 10 16 16 O 1.42102 * 104.27862 * 180.79934 * 15 14 13 17 17 O 1.42098 * 104.27532 * 308.65568 * 15 14 13 18 18 C 1.81401 * 104.44690 * 64.72499 * 15 14 13 19 19 C 1.53001 * 109.46754 * 179.97438 * 18 15 14 20 20 C 1.53005 * 109.46695 * 179.97438 * 19 18 15 21 21 C 1.50702 * 109.46586 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00755 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99774 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00026 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46961 * 89.99634 * 25 23 21 27 27 H 1.48496 * 109.47226 * 209.99899 * 25 23 21 28 28 H 1.48501 * 109.46914 * 329.99931 * 25 23 21 29 29 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47334 * 300.00019 * 1 2 3 31 31 H 1.08996 * 109.47314 * 59.99924 * 1 2 3 32 32 H 1.08001 * 119.99824 * 0.02562 * 5 4 2 33 33 H 1.07999 * 120.00406 * 180.23444 * 6 5 4 34 34 H 1.07993 * 120.00223 * 179.83088 * 7 6 5 35 35 H 1.08006 * 119.99454 * 179.97438 * 8 7 6 36 36 H 1.08005 * 120.00456 * 180.02562 * 9 8 7 37 37 H 0.96704 * 114.00035 * 300.00448 * 12 10 2 38 38 H 1.09002 * 109.46785 * 64.99783 * 13 10 2 39 39 H 1.08994 * 109.46912 * 305.00363 * 13 10 2 40 40 H 0.97000 * 120.00740 * 344.72579 * 14 13 10 41 41 H 1.08996 * 109.47201 * 299.99843 * 18 15 14 42 42 H 1.08997 * 109.46951 * 60.00554 * 18 15 14 43 43 H 1.08997 * 109.47212 * 300.00514 * 19 18 15 44 44 H 1.08997 * 109.46811 * 60.00625 * 19 18 15 45 45 H 1.08996 * 109.47312 * 300.00032 * 20 19 18 46 46 H 1.08997 * 109.46899 * 60.00779 * 20 19 18 47 47 H 0.97000 * 120.00376 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6937 -2.0322 1.4521 6 6 2.1577 -2.6850 2.5788 7 6 2.9536 -2.0137 3.4880 8 6 3.2878 -0.6903 3.2691 9 6 2.8270 -0.0386 2.1405 10 6 2.0400 -0.7213 -1.2492 11 1 1.6766 -1.7489 -1.2492 12 8 3.4690 -0.7208 -1.2495 13 6 1.5300 0.0000 -2.4985 14 7 1.9176 -0.7565 -3.6916 15 16 1.2001 -0.4305 -5.1481 16 8 1.7998 -1.3521 -6.0483 17 8 -0.1928 -0.4779 -4.8710 18 6 1.7145 1.2651 -5.5365 19 6 1.1089 1.6874 -6.8766 20 6 1.5423 3.1179 -7.2038 21 6 0.9452 3.5340 -8.5235 22 1 0.3197 2.8470 -9.0739 23 6 1.1985 4.7917 -9.0287 24 7 1.9607 5.6283 -8.3587 25 14 0.4591 5.3074 -10.6648 26 1 -0.8649 5.9386 -10.4326 27 1 1.3614 6.2806 -11.3310 28 1 0.2929 4.1129 -11.5313 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.0694 -2.5558 0.7432 33 1 1.8962 -3.7188 2.7500 34 1 3.3138 -2.5229 4.3696 35 1 3.9093 -0.1657 3.9797 36 1 3.0885 0.9952 1.9692 37 1 3.8620 0.1628 -1.2497 38 1 1.9646 0.9986 -2.5443 39 1 0.4437 0.0783 -2.4548 40 1 2.5973 -1.4457 -3.6293 41 1 1.3682 1.9385 -4.7525 42 1 2.8018 1.3095 -5.5995 43 1 1.4556 1.0140 -7.6603 44 1 0.0216 1.6430 -6.8140 45 1 1.1952 3.7910 -6.4200 46 1 2.6295 3.1628 -7.2663 47 1 2.1386 6.5132 -8.7139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595381485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:57 Heat of formation + Delta-G solvation = -150.935464 kcal Electronic energy + Delta-G solvation = -27052.183454 eV Core-core repulsion = 23131.877256 eV Total energy + Delta-G solvation = -3920.306197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.68957 -38.84032 -38.15100 -37.04423 -36.45760 -35.38883 -34.94650 -34.15709 -31.73753 -30.68478 -29.64600 -28.18543 -25.61710 -25.36425 -23.73167 -22.87883 -22.42234 -21.20262 -20.27025 -18.70949 -18.58805 -18.28720 -17.52539 -17.22466 -17.08198 -16.59665 -16.47464 -15.98451 -15.80999 -15.62054 -15.34486 -15.19238 -14.60093 -14.48016 -14.13154 -14.11329 -13.87303 -13.60922 -13.50433 -13.27931 -13.20077 -13.13288 -13.02409 -12.94587 -12.82744 -12.75509 -12.61854 -12.41714 -12.15236 -12.00653 -11.80389 -11.74049 -11.49052 -11.37785 -11.13321 -10.85196 -10.57191 -10.36803 -9.74768 -9.51112 -8.22740 -6.33358 -0.72358 0.52366 0.57267 1.40337 1.40813 1.52196 1.79627 2.39778 2.77193 2.93523 3.10831 3.23656 3.44689 3.58749 3.71104 3.82266 3.94822 4.02558 4.12771 4.18709 4.21515 4.33706 4.37729 4.41589 4.49928 4.54712 4.66593 4.68064 4.75161 4.84762 4.95480 4.97120 5.01433 5.08212 5.14532 5.22104 5.24408 5.38746 5.45996 5.63950 5.64748 5.69503 5.78255 5.79884 6.09855 6.19456 6.20218 6.82280 6.86764 7.35846 8.88555 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.002021 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.499468 B =13851.096916 C =14538.528495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 H 0.102 0.898 4 C -0.071 4.071 5 C -0.128 4.128 6 C -0.131 4.131 7 C -0.138 4.138 8 C -0.129 4.129 9 C -0.126 4.126 10 C 0.119 3.881 11 H 0.100 0.900 12 O -0.565 6.565 13 C 0.066 3.934 14 N -1.106 6.106 15 S 2.631 3.369 16 O -0.996 6.996 17 O -0.989 6.989 18 C -0.608 4.608 19 C -0.108 4.108 20 C 0.031 3.969 21 C -0.553 4.553 22 H 0.059 0.941 23 C 0.003 3.997 24 N -0.929 5.929 25 Si 0.962 3.038 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.266 1.266 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.388 0.612 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.425 0.575 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.005 0.995 46 H 0.002 0.998 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 -13.027 25.767 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.098 4.098 3 H 0.120 0.880 4 C -0.071 4.071 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.147 4.147 9 C -0.144 4.144 10 C 0.058 3.942 11 H 0.117 0.883 12 O -0.372 6.372 13 C -0.060 4.060 14 N -0.867 5.867 15 S 2.727 3.273 16 O -0.986 6.986 17 O -0.979 6.979 18 C -0.739 4.739 19 C -0.147 4.147 20 C -0.007 4.007 21 C -0.591 4.591 22 H 0.077 0.923 23 C -0.196 4.196 24 N -0.569 5.569 25 Si 0.786 3.214 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.190 1.190 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.238 0.762 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.262 0.738 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.293 -13.985 25.275 28.915 hybrid contribution 0.463 1.332 -0.654 1.554 sum 1.756 -12.654 24.621 27.737 Atomic orbital electron populations 1.21958 0.93130 1.02871 1.03084 1.20852 0.97073 1.00246 0.91611 0.88010 1.19767 0.97304 0.94197 0.95817 1.21171 1.00615 0.94823 0.98035 1.21383 0.98174 1.00601 0.94746 1.21415 0.98828 0.95265 1.00040 1.21417 1.00098 0.95187 0.97982 1.21299 0.97894 1.00623 0.94536 1.22046 0.81206 1.00223 0.90703 0.88254 1.86605 1.18578 1.35244 1.96732 1.22463 1.02299 0.96207 0.85045 1.55215 1.57823 1.50786 1.22911 1.04162 0.73656 0.76736 0.72777 1.93534 1.78669 1.61457 1.64976 1.93528 1.33065 1.87184 1.84108 1.30490 1.12937 1.23259 1.07210 1.21317 1.00257 0.99858 0.93252 1.18960 0.95566 0.90829 0.95337 1.21752 1.30971 0.99708 1.06639 0.92250 1.25922 0.95543 0.96708 1.01383 1.70062 1.38676 1.07712 1.40406 0.85493 0.78382 0.78253 0.79229 1.19683 1.20574 1.19035 0.92193 0.91701 0.90953 0.85907 0.85071 0.84820 0.84672 0.84785 0.76208 0.88743 0.88808 0.73839 0.83326 0.83635 0.91814 0.91437 0.97624 0.97927 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.66 71.98 0.62 -1.12 16 2 C -0.08 -0.87 2.34 -11.54 -0.03 -0.89 16 3 H 0.10 0.82 7.88 -2.39 -0.02 0.80 16 4 C -0.07 -0.99 4.43 -19.86 -0.09 -1.08 16 5 C -0.13 -1.94 8.71 22.27 0.19 -1.74 16 6 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 7 C -0.14 -1.85 10.05 22.27 0.22 -1.62 16 8 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 9 C -0.13 -1.67 9.67 22.27 0.22 -1.46 16 10 C 0.12 1.53 2.46 30.60 0.08 1.61 16 11 H 0.10 1.46 7.40 -2.39 -0.02 1.44 16 12 O -0.56 -7.86 12.76 -148.98 -1.90 -9.76 16 13 C 0.07 0.94 5.55 86.38 0.48 1.42 16 14 N -1.11 -20.61 5.85 -187.50 -1.10 -21.71 16 15 S 2.63 71.26 5.46 -56.49 -0.31 70.95 16 16 O -1.00 -34.08 18.08 -127.65 -2.31 -36.39 16 17 O -0.99 -32.30 17.51 -127.65 -2.23 -34.54 16 18 C -0.61 -17.06 6.07 71.98 0.44 -16.62 16 19 C -0.11 -4.26 5.16 30.60 0.16 -4.10 16 20 C 0.03 1.58 4.97 29.85 0.15 1.73 16 21 C -0.55 -31.16 9.11 25.60 0.23 -30.92 16 22 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 23 C 0.00 0.15 5.46 84.66 0.46 0.62 16 24 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 25 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H 0.06 0.70 7.38 -2.39 -0.02 0.69 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.79 6.32 -2.39 -0.02 0.77 16 32 H 0.12 1.65 7.10 -2.91 -0.02 1.63 16 33 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 36 H 0.13 1.29 7.95 -2.91 -0.02 1.27 16 37 H 0.39 2.96 9.05 -74.05 -0.67 2.29 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.38 5.73 -2.39 -0.01 1.37 16 40 H 0.43 7.28 8.47 -96.75 -0.82 6.46 16 41 H 0.15 3.45 8.14 -2.39 -0.02 3.43 16 42 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -77.35 399.17 -2.47 -79.82 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.51 Total: 17.78 kcal Atomic # 6 Polarization: -60.90 SS G_CDS: 3.58 Total: -57.31 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -0.81 Total: -76.48 kcal Atomic # 8 Polarization: -74.25 SS G_CDS: -6.44 Total: -80.69 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 71.26 SS G_CDS: -0.31 Total: 70.95 kcal Total: -77.35 -2.47 -79.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595381485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.111 kcal (2) G-P(sol) polarization free energy of solvation -77.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds