Wall clock time and date at job start Wed Apr 1 2020 01:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38237 * 119.99777 * 269.72715 * 16 15 14 18 18 C 1.38243 * 119.99728 * 179.76771 * 17 16 15 19 19 C 1.38241 * 119.99777 * 0.48845 * 18 17 16 20 20 S 1.76200 * 119.99710 * 179.76849 * 19 18 17 21 21 O 1.42099 * 104.28093 * 26.08821 * 20 19 18 22 22 O 1.42100 * 104.27473 * 153.94807 * 20 19 18 23 23 C 1.81403 * 104.44802 * 270.01757 * 20 19 18 24 24 C 1.53003 * 109.47174 * 180.02562 * 23 20 19 25 25 O 1.42895 * 109.47175 * 180.02562 * 24 23 20 26 26 C 1.38231 * 120.00149 * 359.78739 * 19 18 17 27 27 C 1.38231 * 120.00164 * 90.00268 * 16 15 14 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 31 31 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 32 32 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 33 33 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 34 34 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 35 35 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 36 36 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 37 37 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 38 38 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 39 39 H 1.07990 * 120.00514 * 359.97438 * 17 16 15 40 40 H 1.07992 * 119.99931 * 180.25016 * 18 17 16 41 41 H 1.09000 * 109.46930 * 300.00375 * 23 20 19 42 42 H 1.08997 * 109.47063 * 60.00386 * 23 20 19 43 43 H 1.08997 * 109.46622 * 300.00206 * 24 23 20 44 44 H 1.09000 * 109.46741 * 59.99681 * 24 23 20 45 45 H 0.96696 * 114.00205 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.00408 * 179.97438 * 26 19 18 47 47 H 1.08002 * 119.99842 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4976 -0.0761 -5.4865 18 6 0.1129 0.6657 -6.5878 19 6 0.9441 1.6549 -7.0795 20 16 0.4565 2.5962 -8.4869 21 8 -0.9636 2.5476 -8.4662 22 8 1.1496 3.8282 -8.3417 23 6 1.1047 1.6640 -9.9016 24 6 0.7424 2.3890 -11.1993 25 8 1.2525 1.6543 -12.3138 26 6 2.1578 1.9053 -6.4672 27 6 2.5401 1.1670 -5.3627 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2953 33 1 2.9286 -2.0221 3.0617 34 1 3.1263 -0.7997 -1.2054 35 1 1.6053 -1.7200 -1.2950 36 1 0.6529 0.1791 -2.4753 37 1 3.2127 -0.7042 -3.6399 38 1 1.6921 -1.6250 -3.7299 39 1 -0.1497 -0.8519 -5.1052 40 1 -0.8352 0.4698 -7.0664 41 1 2.1888 1.5864 -9.8196 42 1 0.6685 0.6651 -9.9091 43 1 -0.3416 2.4669 -11.2814 44 1 1.1789 3.3878 -11.1914 45 1 1.0600 2.0569 -13.1716 46 1 2.8074 2.6778 -6.8515 47 1 3.4886 1.3624 -4.8846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602629829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:16 Heat of formation + Delta-G solvation = -112.519827 kcal Electronic energy + Delta-G solvation = -26276.042131 eV Core-core repulsion = 22357.401761 eV Total energy + Delta-G solvation = -3918.640370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.79797 -37.70920 -37.57738 -37.14137 -36.41089 -34.59081 -32.58874 -32.02230 -31.40796 -31.00593 -26.89952 -26.41939 -24.61094 -23.97665 -23.23990 -22.40628 -21.73280 -19.51519 -19.31276 -18.75782 -17.88345 -16.90158 -16.77888 -16.32692 -16.24289 -15.95001 -15.41502 -15.06389 -14.94824 -14.72666 -14.55249 -13.91774 -13.84403 -13.70695 -13.43750 -13.17800 -13.16702 -12.76289 -12.54316 -12.44380 -12.33604 -12.20332 -12.10829 -11.70128 -11.57690 -11.50473 -11.36698 -11.07808 -11.00111 -10.80216 -10.69887 -10.29975 -10.09947 -9.90104 -9.63935 -9.44471 -9.37318 -8.50295 -8.36403 -8.30209 -6.33746 -4.02066 -0.51815 0.43585 0.97287 2.35689 2.95638 3.32387 3.44886 3.48156 3.61137 3.63770 3.71299 4.08912 4.09721 4.25999 4.38992 4.47584 4.54150 4.55027 4.59955 4.76869 4.96888 4.97641 5.02671 5.24134 5.27942 5.42432 5.46457 5.58373 5.59775 5.66324 5.70382 5.80577 5.90200 6.08284 6.18061 6.30490 6.40129 6.48238 6.73559 6.87447 6.96888 6.99294 7.12373 7.39075 7.41414 7.57560 8.25050 8.49431 8.91337 9.69426 11.06722 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031334 B = 0.001619 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.372947 B =17293.545140 C =17565.465851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 H 0.068 0.932 4 C 0.015 3.985 5 C -0.595 4.595 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.684 5.684 15 C 0.085 3.915 16 C -0.017 4.017 17 C -0.136 4.136 18 C -0.023 4.023 19 C -0.663 4.663 20 S 2.508 3.492 21 O -0.932 6.932 22 O -0.931 6.931 23 C -0.618 4.618 24 C 0.087 3.913 25 O -0.563 6.563 26 C -0.024 4.024 27 C -0.117 4.117 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.006 0.994 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.342 0.658 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.132 0.868 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.387 0.613 46 H 0.142 0.858 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 4.575 -33.225 33.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 H 0.086 0.914 4 C -0.023 4.023 5 C -0.633 4.633 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.899 3.101 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.044 4.044 16 C -0.018 4.018 17 C -0.155 4.155 18 C -0.042 4.042 19 C -0.752 4.752 20 S 2.687 3.313 21 O -0.929 6.929 22 O -0.928 6.928 23 C -0.746 4.746 24 C 0.008 3.992 25 O -0.369 6.369 26 C -0.043 4.043 27 C -0.137 4.137 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.161 0.839 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.235 0.765 46 H 0.160 0.840 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.857 5.360 -31.057 31.646 hybrid contribution -0.377 -1.285 -1.937 2.355 sum -3.234 4.075 -32.994 33.402 Atomic orbital electron populations 1.21738 0.96397 1.00444 1.00561 1.21096 0.95087 1.00091 0.93390 0.91396 1.19240 0.95357 0.95418 0.92239 1.22060 1.38696 1.10303 0.92245 0.93134 1.25828 0.94708 0.97116 1.01400 1.70756 1.36324 1.14703 1.33482 0.83525 0.76001 0.75238 0.75356 1.21501 1.21517 1.21089 1.22196 1.00454 0.94471 0.89358 1.60613 1.20068 1.50224 1.00651 1.21054 1.01499 0.94225 0.87579 1.20289 0.93311 0.94050 0.94164 1.21235 0.96628 1.00967 0.96682 1.20894 0.97402 0.91080 0.94836 1.30273 1.05797 1.16417 1.22693 1.05046 0.75089 0.75336 0.75853 1.93589 1.26742 1.86426 1.86161 1.93593 1.75327 1.38703 1.85202 1.30533 1.14820 1.15621 1.13615 1.21705 0.98542 0.93983 0.84976 1.86509 1.80827 1.52815 1.16772 1.20960 0.93223 0.96055 0.94032 1.21230 1.00807 0.95453 0.96198 0.94824 0.94074 0.91604 0.97577 0.97660 0.92190 0.91314 0.95636 0.83925 0.89637 0.93983 0.85043 0.84100 0.83861 0.83897 0.91703 0.91669 0.76456 0.84016 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.57 2.55 -90.62 -0.23 -1.80 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.01 0.38 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -16.80 8.41 -34.44 -0.29 -17.09 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -28.15 13.65 55.43 0.76 -27.39 16 9 Si 1.07 25.53 29.90 -169.99 -5.08 20.45 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 14 N -0.68 -9.51 6.49 -115.06 -0.75 -10.25 16 15 C 0.09 0.94 5.81 -4.98 -0.03 0.91 16 16 C -0.02 -0.18 5.39 -104.62 -0.56 -0.74 16 17 C -0.14 -1.27 9.70 -39.58 -0.38 -1.66 16 18 C -0.02 -0.21 9.47 -39.58 -0.37 -0.58 16 19 C -0.66 -5.89 5.66 -39.58 -0.22 -6.11 16 20 S 2.51 19.42 5.16 -107.50 -0.55 18.86 16 21 O -0.93 -9.72 17.13 -57.54 -0.99 -10.70 16 22 O -0.93 -9.79 17.13 -57.54 -0.99 -10.78 16 23 C -0.62 -3.05 6.35 37.16 0.24 -2.82 16 24 C 0.09 0.42 7.05 37.16 0.26 0.69 16 25 O -0.56 -3.06 13.66 -35.23 -0.48 -3.54 16 26 C -0.02 -0.22 9.47 -39.58 -0.37 -0.59 16 27 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 28 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 31 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 32 H 0.01 0.14 8.00 -51.93 -0.42 -0.28 16 33 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.34 4.62 6.98 -39.29 -0.27 4.34 16 37 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.14 0.98 7.57 -52.49 -0.40 0.59 16 41 H 0.14 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.14 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.39 0.26 9.12 45.56 0.42 0.67 16 46 H 0.14 1.03 7.57 -52.49 -0.40 0.64 16 47 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -37.41 399.71 -11.03 -48.44 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.72 Total: 0.84 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: -2.25 Total: -31.94 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.01 Total: -37.65 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -2.45 Total: -25.02 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Atomic # 16 Polarization: 19.42 SS G_CDS: -0.55 Total: 18.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.41 -11.03 -48.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602629829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.083 kcal (2) G-P(sol) polarization free energy of solvation -37.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds