Wall clock time and date at job start Wed Apr 1 2020 01:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38237 * 119.99777 * 269.72715 * 16 15 14 18 18 C 1.38243 * 119.99728 * 179.76771 * 17 16 15 19 19 C 1.38241 * 119.99777 * 0.48845 * 18 17 16 20 20 S 1.76200 * 119.99710 * 179.76849 * 19 18 17 21 21 O 1.42099 * 104.28093 * 26.08821 * 20 19 18 22 22 O 1.42100 * 104.27473 * 153.94807 * 20 19 18 23 23 C 1.81403 * 104.44802 * 270.01757 * 20 19 18 24 24 C 1.53003 * 109.47174 * 180.02562 * 23 20 19 25 25 O 1.42895 * 109.47175 * 180.02562 * 24 23 20 26 26 C 1.38231 * 120.00149 * 359.78739 * 19 18 17 27 27 C 1.38231 * 120.00164 * 90.00268 * 16 15 14 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 31 31 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 32 32 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 33 33 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 34 34 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 35 35 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 36 36 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 37 37 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 38 38 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 39 39 H 1.07990 * 120.00514 * 359.97438 * 17 16 15 40 40 H 1.07992 * 119.99931 * 180.25016 * 18 17 16 41 41 H 1.09000 * 109.46930 * 300.00375 * 23 20 19 42 42 H 1.08997 * 109.47063 * 60.00386 * 23 20 19 43 43 H 1.08997 * 109.46622 * 300.00206 * 24 23 20 44 44 H 1.09000 * 109.46741 * 59.99681 * 24 23 20 45 45 H 0.96696 * 114.00205 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.00408 * 179.97438 * 26 19 18 47 47 H 1.08002 * 119.99842 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4976 -0.0761 -5.4865 18 6 0.1129 0.6657 -6.5878 19 6 0.9441 1.6549 -7.0795 20 16 0.4565 2.5962 -8.4869 21 8 -0.9636 2.5476 -8.4662 22 8 1.1496 3.8282 -8.3417 23 6 1.1047 1.6640 -9.9016 24 6 0.7424 2.3890 -11.1993 25 8 1.2525 1.6543 -12.3138 26 6 2.1578 1.9053 -6.4672 27 6 2.5401 1.1670 -5.3627 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2953 33 1 2.9286 -2.0221 3.0617 34 1 3.1263 -0.7997 -1.2054 35 1 1.6053 -1.7200 -1.2950 36 1 0.6529 0.1791 -2.4753 37 1 3.2127 -0.7042 -3.6399 38 1 1.6921 -1.6250 -3.7299 39 1 -0.1497 -0.8519 -5.1052 40 1 -0.8352 0.4698 -7.0664 41 1 2.1888 1.5864 -9.8196 42 1 0.6685 0.6651 -9.9091 43 1 -0.3416 2.4669 -11.2814 44 1 1.1789 3.3878 -11.1914 45 1 1.0600 2.0569 -13.1716 46 1 2.8074 2.6778 -6.8515 47 1 3.4886 1.3624 -4.8846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602629829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:15 Heat of formation + Delta-G solvation = -141.579104 kcal Electronic energy + Delta-G solvation = -26277.302236 eV Core-core repulsion = 22357.401761 eV Total energy + Delta-G solvation = -3919.900475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.52480 -38.51766 -38.28404 -38.04043 -37.12398 -36.10285 -34.29651 -32.43510 -32.15015 -32.08518 -28.61519 -27.72930 -26.01560 -24.52978 -24.10570 -23.90698 -22.54577 -20.95597 -20.11827 -19.26770 -18.89993 -18.42831 -17.53811 -17.23863 -16.82350 -16.57739 -16.19348 -16.07739 -15.78598 -15.62246 -15.56873 -15.37057 -15.11914 -14.96816 -14.53667 -14.19708 -13.90206 -13.61273 -13.54988 -13.50842 -13.26424 -13.17032 -13.13069 -12.93875 -12.83341 -12.67485 -12.51951 -12.18222 -12.14675 -11.95768 -11.90139 -11.66430 -11.62239 -11.32890 -11.10174 -10.60612 -10.52688 -10.30117 -10.06594 -9.46971 -8.65979 -6.35036 -1.10276 -0.28043 0.27882 1.52036 1.60933 1.76192 1.78430 2.28717 2.56885 2.76411 3.05345 3.18090 3.25810 3.32745 3.64080 3.69553 3.78551 3.79920 3.91115 4.07026 4.10077 4.20077 4.22847 4.29485 4.31878 4.46687 4.53927 4.57264 4.64652 4.70029 4.71895 4.73602 4.89416 4.94801 5.00562 5.02268 5.09451 5.21563 5.29084 5.45167 5.46498 5.60779 5.78898 5.91311 6.07574 6.21972 6.33909 6.62251 6.76655 7.45428 8.74883 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031334 B = 0.001619 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.372947 B =17293.545140 C =17565.465851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 H 0.054 0.946 4 C 0.017 3.983 5 C -0.607 4.607 6 H 0.050 0.950 7 C -0.042 4.042 8 N -0.941 5.941 9 Si 1.118 2.882 10 H -0.274 1.274 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.078 3.922 14 N -0.687 5.687 15 C 0.088 3.912 16 C -0.031 4.031 17 C -0.140 4.140 18 C -0.032 4.032 19 C -0.666 4.666 20 S 2.524 3.476 21 O -0.962 6.962 22 O -0.963 6.963 23 C -0.601 4.601 24 C 0.073 3.927 25 O -0.581 6.581 26 C -0.033 4.033 27 C -0.128 4.128 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.042 0.958 31 H -0.015 1.015 32 H -0.012 1.012 33 H 0.255 0.745 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.345 0.655 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.406 0.594 46 H 0.156 0.844 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 5.033 -34.968 35.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.021 4.021 5 C -0.644 4.644 6 H 0.069 0.931 7 C -0.239 4.239 8 N -0.579 5.579 9 Si 0.939 3.061 10 H -0.200 1.200 11 H -0.195 1.195 12 H -0.209 1.209 13 C -0.051 4.051 14 N -0.319 5.319 15 C -0.040 4.040 16 C -0.031 4.031 17 C -0.159 4.159 18 C -0.050 4.050 19 C -0.754 4.754 20 S 2.706 3.294 21 O -0.959 6.959 22 O -0.961 6.961 23 C -0.731 4.731 24 C -0.006 4.006 25 O -0.391 6.391 26 C -0.052 4.052 27 C -0.148 4.148 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.003 0.997 32 H 0.007 0.993 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.165 0.835 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.257 0.743 46 H 0.173 0.827 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.636 5.843 -32.818 33.532 hybrid contribution -0.119 -1.437 -1.553 2.119 sum -3.755 4.405 -34.371 34.855 Atomic orbital electron populations 1.21645 0.94923 1.00762 1.01058 1.20918 0.96266 0.98869 0.92968 0.92788 1.19176 0.93949 0.94830 0.94116 1.22470 1.38076 1.10390 0.93512 0.93122 1.27365 0.94088 0.97269 1.05135 1.70891 1.38232 1.15969 1.32856 0.82923 0.76885 0.74391 0.71876 1.19973 1.19462 1.20900 1.21861 0.99926 0.94328 0.88971 1.60509 1.20393 1.50286 1.00760 1.21056 1.01700 0.94718 0.86511 1.20257 0.94058 0.94559 0.94276 1.21456 0.96450 1.01309 0.96660 1.21183 0.98096 0.90940 0.94827 1.30445 1.05622 1.16190 1.23125 1.04447 0.74069 0.74803 0.76093 1.93547 1.28686 1.86903 1.86808 1.93550 1.75624 1.40919 1.85970 1.30322 1.15661 1.15525 1.11642 1.21902 0.99542 0.94420 0.84759 1.86444 1.81096 1.53566 1.17949 1.21189 0.93712 0.96365 0.93954 1.21404 1.01192 0.95593 0.96588 0.91502 0.93810 0.93873 0.99695 0.99325 0.93591 0.91920 0.95174 0.83521 0.89398 0.92780 0.83510 0.82417 0.82339 0.82257 0.90554 0.90607 0.74267 0.82668 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.77 71.98 0.63 -3.97 16 2 C -0.07 -2.88 2.55 -10.79 -0.03 -2.91 16 3 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 4 C 0.02 0.87 3.76 29.85 0.11 0.98 16 5 C -0.61 -34.73 8.41 25.60 0.22 -34.51 16 6 H 0.05 2.84 7.06 -2.91 -0.02 2.82 16 7 C -0.04 -2.44 5.46 84.65 0.46 -1.98 16 8 N -0.94 -58.98 13.65 21.45 0.29 -58.69 16 9 Si 1.12 51.07 29.90 68.60 2.05 53.12 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.08 2.52 5.14 86.31 0.44 2.97 16 14 N -0.69 -18.10 6.49 -517.93 -3.36 -21.46 16 15 C 0.09 1.82 5.81 85.56 0.50 2.31 16 16 C -0.03 -0.59 5.39 -19.87 -0.11 -0.70 16 17 C -0.14 -2.35 9.70 22.27 0.22 -2.14 16 18 C -0.03 -0.51 9.47 22.27 0.21 -0.30 16 19 C -0.67 -10.89 5.66 22.27 0.13 -10.76 16 20 S 2.52 35.90 5.16 -56.49 -0.29 35.61 16 21 O -0.96 -19.09 17.13 -127.65 -2.19 -21.28 16 22 O -0.96 -19.55 17.13 -127.65 -2.19 -21.74 16 23 C -0.60 -4.52 6.35 71.98 0.46 -4.07 16 24 C 0.07 0.55 7.05 71.98 0.51 1.06 16 25 O -0.58 -4.97 13.66 -148.98 -2.03 -7.01 16 26 C -0.03 -0.57 9.47 22.27 0.21 -0.36 16 27 C -0.13 -2.39 9.70 22.27 0.22 -2.18 16 28 H 0.07 1.97 6.68 -2.39 -0.02 1.95 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.74 6.95 -2.39 -0.02 1.73 16 31 H -0.02 -0.84 8.01 -2.39 -0.02 -0.86 16 32 H -0.01 -0.63 8.00 -2.39 -0.02 -0.65 16 33 H 0.25 16.12 7.22 -92.71 -0.67 15.45 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.35 8.62 6.98 -89.69 -0.63 7.99 16 37 H 0.09 1.75 8.09 -2.39 -0.02 1.74 16 38 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 39 H 0.15 1.92 8.06 -2.92 -0.02 1.90 16 40 H 0.16 1.90 7.57 -2.91 -0.02 1.87 16 41 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.41 -0.30 9.12 -74.06 -0.68 -0.97 16 46 H 0.16 2.10 7.57 -2.91 -0.02 2.08 16 47 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -80.72 399.71 -3.77 -84.49 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -0.23 Total: 13.50 kcal Atomic # 6 Polarization: -60.72 SS G_CDS: 4.17 Total: -56.55 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -3.07 Total: -80.15 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -6.41 Total: -50.03 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Atomic # 16 Polarization: 35.90 SS G_CDS: -0.29 Total: 35.61 kcal Total: -80.72 -3.77 -84.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602629829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.088 kcal (2) G-P(sol) polarization free energy of solvation -80.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds