Wall clock time and date at job start Wed Apr 1 2020 01:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00150 * 2 1 4 4 O 1.42902 * 109.46862 * 135.00035 * 3 2 1 5 5 C 1.36071 * 116.99863 * 180.02562 * 4 3 2 6 6 C 1.35767 * 127.26186 * 0.30984 * 5 4 3 7 7 N 1.36111 * 107.05848 * 180.15284 * 6 5 4 8 8 C 1.40091 * 124.93360 * 179.83785 * 7 6 5 9 9 C 1.38868 * 120.07030 * 179.71905 * 8 7 6 10 10 C 1.38115 * 119.92822 * 179.97438 * 9 8 7 11 11 C 1.38278 * 120.07350 * 0.02562 * 10 9 8 12 12 C 1.38288 * 120.13490 * 0.02562 * 11 10 9 13 13 C 1.38108 * 120.07351 * 0.02562 * 12 11 10 14 14 N 1.28461 * 110.13049 * 359.56759 * 7 6 5 15 15 C 1.31984 * 110.22034 * 0.26915 * 14 7 6 16 16 C 1.47480 * 126.44550 * 179.97438 * 15 14 7 17 17 O 1.21598 * 119.99819 * 180.02562 * 16 15 14 18 18 N 1.34777 * 119.99959 * 0.02562 * 16 15 14 19 19 C 1.46500 * 120.00142 * 179.97438 * 18 16 15 20 20 H 1.09005 * 109.46748 * 35.00821 * 19 18 16 21 21 C 1.52992 * 109.47350 * 275.00866 * 19 18 16 22 22 C 1.50700 * 109.46937 * 155.00515 * 19 18 16 23 23 H 1.07996 * 120.00070 * 359.97438 * 22 19 18 24 24 C 1.37878 * 119.99805 * 180.02562 * 22 19 18 25 25 N 1.31511 * 120.00012 * 359.97438 * 24 22 19 26 26 Si 1.86797 * 119.99712 * 180.02562 * 24 22 19 27 27 H 1.48497 * 109.47376 * 60.00183 * 26 24 22 28 28 H 1.48510 * 109.47100 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47194 * 299.99677 * 26 24 22 30 30 H 1.08002 * 119.99709 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99770 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00095 * 180.02562 * 2 1 3 33 33 H 1.09004 * 109.46945 * 15.00523 * 3 2 1 34 34 H 1.08996 * 109.47164 * 255.00149 * 3 2 1 35 35 H 1.08000 * 126.46762 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.03345 * 0.25577 * 9 8 7 37 37 H 1.08000 * 119.96136 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.93551 * 179.97438 * 11 10 9 39 39 H 1.08003 * 119.96375 * 179.97438 * 12 11 10 40 40 H 1.07998 * 120.03477 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99733 * 0.02562 * 18 16 15 42 42 H 1.08998 * 109.47629 * 59.99822 * 21 19 18 43 43 H 1.09003 * 109.46902 * 179.97438 * 21 19 18 44 44 H 1.08997 * 109.47468 * 299.99537 * 21 19 18 45 45 H 0.97005 * 119.99824 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9102 2.3466 1.0792 6 6 3.7945 3.5178 0.4024 7 7 4.7882 4.3353 0.8463 8 6 5.0162 5.6406 0.3918 9 6 6.0595 6.3892 0.9207 10 6 6.2820 7.6757 0.4701 11 6 5.4669 8.2187 -0.5061 12 6 4.4266 7.4761 -1.0340 13 6 4.1982 6.1895 -0.5869 14 7 5.4831 3.7378 1.7465 15 6 5.0160 2.5203 1.9501 16 6 5.5448 1.5270 2.9034 17 8 5.0209 0.4336 2.9952 18 7 6.6086 1.8313 3.6728 19 6 7.1336 0.8449 4.6202 20 1 7.0318 -0.1547 4.1976 21 6 6.3476 0.9273 5.9302 22 6 8.5887 1.1310 4.8886 23 1 9.0739 1.9640 4.4018 24 6 9.3006 0.3286 5.7548 25 7 8.7098 -0.6860 6.3472 26 14 11.1040 0.6837 6.0880 27 1 11.2422 2.0452 6.6645 28 1 11.6363 -0.3163 7.0483 29 1 11.8672 0.6047 4.8165 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3856 2.1161 0.2661 34 1 2.4756 1.4868 -0.9926 35 1 3.0551 3.7553 -0.3481 36 1 6.6989 5.9643 1.6802 37 1 7.0929 8.2586 0.8813 38 1 5.6427 9.2250 -0.8565 39 1 3.7915 7.9030 -1.7961 40 1 3.3853 5.6103 -0.9993 41 1 7.0263 2.7038 3.5998 42 1 5.2951 0.7204 5.7361 43 1 6.7379 0.1930 6.6349 44 1 6.4494 1.9268 6.3528 45 1 9.2107 -1.2503 6.9569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610436378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:33 Heat of formation + Delta-G solvation = 65.994326 kcal Electronic energy + Delta-G solvation = -28536.317110 eV Core-core repulsion = 24522.266494 eV Total energy + Delta-G solvation = -4014.050616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.94710 -39.52632 -38.51384 -38.38752 -34.71331 -34.27970 -33.48534 -32.23826 -31.62927 -30.14374 -29.59943 -28.49481 -26.70236 -25.18505 -24.52613 -23.31400 -22.08063 -21.11220 -20.69798 -20.08116 -19.17727 -18.83191 -17.31969 -17.16275 -16.62071 -16.45352 -15.80190 -15.71808 -15.16347 -15.14745 -14.84820 -14.61700 -14.20417 -14.10487 -13.85148 -13.79151 -13.37705 -13.01369 -12.93947 -12.32139 -12.23993 -12.03254 -11.72783 -11.63748 -11.55080 -11.22131 -11.04945 -10.92717 -10.89683 -10.66431 -10.27295 -10.15091 -10.04770 -9.69921 -9.42029 -9.17687 -8.97221 -8.95034 -8.47235 -8.06921 -7.76319 -6.04621 -4.13247 0.48308 0.93288 1.85009 1.94330 2.20400 2.21799 3.30239 3.31552 3.36010 3.38036 3.40873 4.04953 4.07154 4.21101 4.39790 4.45106 4.53932 4.63085 4.70798 4.79512 4.85184 4.95286 4.99825 5.12042 5.17186 5.22660 5.27327 5.27874 5.58780 5.62803 5.70424 5.86674 5.93803 6.04265 6.09774 6.33907 6.35556 6.41244 6.80084 6.92787 7.07377 7.23913 7.33748 7.53711 7.63579 7.74796 7.86000 8.02329 8.22755 8.77152 8.86485 9.20326 9.53684 11.01522 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007644 B = 0.003423 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.080571 B = 8177.296344 C =11558.285285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.084 3.916 4 O -0.263 6.263 5 C 0.076 3.924 6 C -0.113 4.113 7 N -0.229 5.229 8 C 0.148 3.852 9 C -0.111 4.111 10 C -0.096 4.096 11 C -0.126 4.126 12 C -0.097 4.097 13 C -0.132 4.132 14 N -0.235 5.235 15 C 0.008 3.992 16 C 0.585 3.415 17 O -0.531 6.531 18 N -0.693 5.693 19 C 0.265 3.735 20 H 0.051 0.949 21 C -0.147 4.147 22 C -0.532 4.532 23 H 0.061 0.939 24 C 0.066 3.934 25 N -0.884 5.884 26 Si 0.902 3.098 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.182 0.818 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.394 0.606 42 H 0.016 0.984 43 H 0.091 0.909 44 H 0.027 0.973 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.120 15.943 -17.154 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C 0.008 3.992 4 O -0.173 6.173 5 C 0.021 3.979 6 C -0.251 4.251 7 N -0.014 5.014 8 C 0.057 3.943 9 C -0.131 4.131 10 C -0.114 4.114 11 C -0.145 4.145 12 C -0.116 4.116 13 C -0.152 4.152 14 N -0.069 5.069 15 C -0.154 4.154 16 C 0.367 3.633 17 O -0.406 6.406 18 N -0.340 5.340 19 C 0.164 3.836 20 H 0.069 0.931 21 C -0.206 4.206 22 C -0.571 4.571 23 H 0.080 0.920 24 C -0.137 4.137 25 N -0.522 5.522 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.202 1.202 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.199 0.801 36 H 0.163 0.837 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.227 0.773 42 H 0.035 0.965 43 H 0.109 0.891 44 H 0.046 0.954 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.628 15.486 -16.481 25.902 hybrid contribution 0.358 0.223 -0.338 0.541 sum -12.269 15.709 -16.819 26.080 Atomic orbital electron populations 1.23828 0.95344 1.02370 0.99827 1.22682 0.95609 0.98011 1.00281 1.21850 0.88147 0.96978 0.92185 1.86364 1.41289 1.31767 1.57881 1.18739 0.94243 0.87270 0.97645 1.22401 1.01046 0.92237 1.09446 1.42031 1.21454 1.10398 1.27562 1.17658 0.98194 0.81078 0.97356 1.21079 0.96838 0.94328 1.00833 1.21128 0.99415 0.94395 0.96499 1.21288 0.95551 1.00374 0.97239 1.20973 0.97872 0.93118 0.99637 1.20828 1.00145 0.96762 0.97507 1.73662 1.19325 1.06729 1.07216 1.22234 0.97457 0.92921 1.02800 1.16743 0.81469 0.85154 0.79955 1.90800 1.59461 1.21842 1.68497 1.46409 1.29359 1.19188 1.39091 1.18794 0.91957 0.88203 0.84688 0.93132 1.22082 0.96739 1.00921 1.00859 1.21191 0.94205 1.14526 1.27136 0.92041 1.24875 0.98641 0.94769 0.95389 1.69899 1.36406 1.16751 1.29114 0.86505 0.84440 0.78008 0.78108 1.20173 1.21171 1.20185 0.87456 0.88450 0.85892 0.91871 0.91362 0.80078 0.83724 0.84740 0.85324 0.84941 0.85112 0.77284 0.96509 0.89060 0.95421 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 14.31 29.01 0.42 -1.07 16 2 C -0.15 -1.57 9.89 -36.03 -0.36 -1.92 16 3 C 0.08 0.93 5.56 36.01 0.20 1.13 16 4 O -0.26 -4.40 9.74 -22.22 -0.22 -4.62 16 5 C 0.08 1.27 7.05 -39.10 -0.28 1.00 16 6 C -0.11 -1.47 9.91 -16.54 -0.16 -1.63 16 7 N -0.23 -3.24 3.52 -10.40 -0.04 -3.28 16 8 C 0.15 1.70 6.66 -83.62 -0.56 1.14 16 9 C -0.11 -1.19 9.59 -39.39 -0.38 -1.57 16 10 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 11 C -0.13 -0.84 10.04 -39.55 -0.40 -1.24 16 12 C -0.10 -0.65 10.04 -39.61 -0.40 -1.04 16 13 C -0.13 -1.11 9.43 -39.40 -0.37 -1.48 16 14 N -0.24 -4.03 10.84 33.46 0.36 -3.66 16 15 C 0.01 0.16 7.13 -82.67 -0.59 -0.43 16 16 C 0.59 13.60 7.78 -12.49 -0.10 13.50 16 17 O -0.53 -14.04 16.19 3.03 0.05 -13.99 16 18 N -0.69 -16.19 5.07 -56.00 -0.28 -16.47 16 19 C 0.26 7.13 2.56 -69.09 -0.18 6.95 16 20 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 21 C -0.15 -3.85 9.26 37.15 0.34 -3.51 16 22 C -0.53 -14.69 8.73 -34.44 -0.30 -14.99 16 23 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 24 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 25 N -0.88 -25.52 11.32 55.43 0.63 -24.89 16 26 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.11 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.10 0.68 7.90 -52.48 -0.41 0.27 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16 34 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.18 1.54 6.64 -52.49 -0.35 1.19 16 36 H 0.14 1.67 7.64 -52.49 -0.40 1.27 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 40 H 0.13 0.83 6.65 -52.49 -0.35 0.48 16 41 H 0.39 8.38 8.26 -40.82 -0.34 8.04 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -34.36 390.11 -8.12 -42.48 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.89 Total: 6.98 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -3.59 Total: -4.59 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.67 Total: -48.30 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.17 Total: -18.61 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.36 -8.12 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610436378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.476 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds