Wall clock time and date at job start Wed Apr 1 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00150 * 2 1 4 4 O 1.42902 * 109.46862 * 135.00035 * 3 2 1 5 5 C 1.36071 * 116.99863 * 180.02562 * 4 3 2 6 6 C 1.35767 * 127.26186 * 0.30984 * 5 4 3 7 7 N 1.36111 * 107.05848 * 180.15284 * 6 5 4 8 8 C 1.40091 * 124.93360 * 179.83785 * 7 6 5 9 9 C 1.38868 * 120.07030 * 179.71905 * 8 7 6 10 10 C 1.38115 * 119.92822 * 179.97438 * 9 8 7 11 11 C 1.38278 * 120.07350 * 0.02562 * 10 9 8 12 12 C 1.38288 * 120.13490 * 0.02562 * 11 10 9 13 13 C 1.38108 * 120.07351 * 0.02562 * 12 11 10 14 14 N 1.28461 * 110.13049 * 359.56759 * 7 6 5 15 15 C 1.31984 * 110.22034 * 0.26915 * 14 7 6 16 16 C 1.47480 * 126.44550 * 179.97438 * 15 14 7 17 17 O 1.21598 * 119.99819 * 180.02562 * 16 15 14 18 18 N 1.34777 * 119.99959 * 0.02562 * 16 15 14 19 19 C 1.46500 * 120.00142 * 179.97438 * 18 16 15 20 20 H 1.09005 * 109.46748 * 35.00821 * 19 18 16 21 21 C 1.52992 * 109.47350 * 275.00866 * 19 18 16 22 22 C 1.50700 * 109.46937 * 155.00515 * 19 18 16 23 23 H 1.07996 * 120.00070 * 359.97438 * 22 19 18 24 24 C 1.37878 * 119.99805 * 180.02562 * 22 19 18 25 25 N 1.31511 * 120.00012 * 359.97438 * 24 22 19 26 26 Si 1.86797 * 119.99712 * 180.02562 * 24 22 19 27 27 H 1.48497 * 109.47376 * 60.00183 * 26 24 22 28 28 H 1.48510 * 109.47100 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47194 * 299.99677 * 26 24 22 30 30 H 1.08002 * 119.99709 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99770 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.00095 * 180.02562 * 2 1 3 33 33 H 1.09004 * 109.46945 * 15.00523 * 3 2 1 34 34 H 1.08996 * 109.47164 * 255.00149 * 3 2 1 35 35 H 1.08000 * 126.46762 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.03345 * 0.25577 * 9 8 7 37 37 H 1.08000 * 119.96136 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.93551 * 179.97438 * 11 10 9 39 39 H 1.08003 * 119.96375 * 179.97438 * 12 11 10 40 40 H 1.07998 * 120.03477 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99733 * 0.02562 * 18 16 15 42 42 H 1.08998 * 109.47629 * 59.99822 * 21 19 18 43 43 H 1.09003 * 109.46902 * 179.97438 * 21 19 18 44 44 H 1.08997 * 109.47468 * 299.99537 * 21 19 18 45 45 H 0.97005 * 119.99824 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9102 2.3466 1.0792 6 6 3.7945 3.5178 0.4024 7 7 4.7882 4.3353 0.8463 8 6 5.0162 5.6406 0.3918 9 6 6.0595 6.3892 0.9207 10 6 6.2820 7.6757 0.4701 11 6 5.4669 8.2187 -0.5061 12 6 4.4266 7.4761 -1.0340 13 6 4.1982 6.1895 -0.5869 14 7 5.4831 3.7378 1.7465 15 6 5.0160 2.5203 1.9501 16 6 5.5448 1.5270 2.9034 17 8 5.0209 0.4336 2.9952 18 7 6.6086 1.8313 3.6728 19 6 7.1336 0.8449 4.6202 20 1 7.0318 -0.1547 4.1976 21 6 6.3476 0.9273 5.9302 22 6 8.5887 1.1310 4.8886 23 1 9.0739 1.9640 4.4018 24 6 9.3006 0.3286 5.7548 25 7 8.7098 -0.6860 6.3472 26 14 11.1040 0.6837 6.0880 27 1 11.2422 2.0452 6.6645 28 1 11.6363 -0.3163 7.0483 29 1 11.8672 0.6047 4.8165 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3856 2.1161 0.2661 34 1 2.4756 1.4868 -0.9926 35 1 3.0551 3.7553 -0.3481 36 1 6.6989 5.9643 1.6802 37 1 7.0929 8.2586 0.8813 38 1 5.6427 9.2250 -0.8565 39 1 3.7915 7.9030 -1.7961 40 1 3.3853 5.6103 -0.9993 41 1 7.0263 2.7038 3.5998 42 1 5.2951 0.7204 5.7361 43 1 6.7379 0.1930 6.6349 44 1 6.4494 1.9268 6.3528 45 1 9.2107 -1.2503 6.9569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610436378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:31 Heat of formation + Delta-G solvation = 43.698671 kcal Electronic energy + Delta-G solvation = -28537.283922 eV Core-core repulsion = 24522.266494 eV Total energy + Delta-G solvation = -4015.017428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.09664 -40.54408 -40.00223 -39.48722 -36.74201 -35.13990 -34.60545 -34.12761 -32.34667 -31.41881 -30.86206 -29.97460 -27.52568 -27.36648 -25.84518 -24.06337 -23.34280 -22.31098 -21.91738 -21.29725 -20.68555 -19.85351 -18.95124 -18.09837 -17.72743 -17.65186 -17.26066 -17.06103 -16.60774 -16.15664 -16.06586 -15.68084 -15.53650 -15.39852 -15.02991 -14.83453 -14.45940 -14.40765 -14.11579 -13.81934 -13.66662 -13.23236 -13.02447 -12.89077 -12.76413 -12.61216 -12.59505 -12.36224 -12.29374 -12.16283 -12.01067 -11.90608 -11.16615 -11.10066 -11.07318 -10.60952 -10.44723 -10.02825 -9.91450 -9.83139 -9.04975 -8.18381 -6.36505 -0.37171 0.33158 0.69352 1.04932 1.14037 1.26428 1.43588 1.46996 1.54814 2.20180 2.34537 2.40003 2.61132 2.77321 3.11324 3.16900 3.60225 3.73557 3.86176 3.95085 4.01144 4.09455 4.18127 4.24602 4.33500 4.41250 4.47574 4.54959 4.63993 4.70221 4.75239 4.89926 4.96695 5.02866 5.05360 5.21944 5.35673 5.38745 5.50544 5.55994 5.61230 5.62627 5.65707 5.67965 5.86211 5.98776 6.05715 6.32125 6.57932 6.68634 6.92337 7.26970 7.43465 8.88351 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007644 B = 0.003423 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.080571 B = 8177.296344 C =11558.285285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.184 4.184 3 C 0.078 3.922 4 O -0.301 6.301 5 C 0.056 3.944 6 C -0.082 4.082 7 N -0.213 5.213 8 C 0.103 3.897 9 C -0.131 4.131 10 C -0.103 4.103 11 C -0.112 4.112 12 C -0.093 4.093 13 C -0.123 4.123 14 N -0.245 5.245 15 C -0.042 4.042 16 C 0.584 3.416 17 O -0.576 6.576 18 N -0.691 5.691 19 C 0.272 3.728 20 H 0.002 0.998 21 C -0.133 4.133 22 C -0.551 4.551 23 H 0.070 0.930 24 C 0.016 3.984 25 N -0.916 5.916 26 Si 0.976 3.024 27 H -0.263 1.263 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.234 0.766 36 H 0.123 0.877 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.157 0.843 41 H 0.404 0.596 42 H 0.011 0.989 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 20.046 -19.867 31.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.202 4.202 3 C 0.004 3.996 4 O -0.213 6.213 5 C 0.001 3.999 6 C -0.222 4.222 7 N 0.002 4.998 8 C 0.013 3.987 9 C -0.151 4.151 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.111 4.111 13 C -0.143 4.143 14 N -0.082 5.082 15 C -0.201 4.201 16 C 0.369 3.631 17 O -0.454 6.454 18 N -0.340 5.340 19 C 0.169 3.831 20 H 0.020 0.980 21 C -0.192 4.192 22 C -0.589 4.589 23 H 0.088 0.912 24 C -0.184 4.184 25 N -0.554 5.554 26 Si 0.800 3.200 27 H -0.188 1.188 28 H -0.207 1.207 29 H -0.196 1.196 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.141 0.859 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.188 0.812 40 H 0.174 0.826 41 H 0.239 0.761 42 H 0.030 0.970 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.618 19.629 -19.208 30.655 hybrid contribution 0.553 -0.846 0.337 1.065 sum -13.066 18.783 -18.871 29.659 Atomic orbital electron populations 1.24096 0.94464 1.03961 0.96351 1.22684 0.96549 0.97441 1.03560 1.22181 0.87352 0.97922 0.92127 1.86311 1.42716 1.32470 1.59805 1.18831 0.94151 0.88718 0.98196 1.23021 1.00536 0.90128 1.08512 1.42444 1.20459 1.11206 1.25738 1.18117 1.00440 0.80171 0.99938 1.21134 0.97047 0.95759 1.01128 1.21390 1.00360 0.93370 0.96978 1.21762 0.94272 1.01592 0.95429 1.21467 0.97851 0.92150 0.99640 1.21215 0.99681 0.97594 0.95825 1.73570 1.20097 1.06071 1.08505 1.21577 1.00280 0.93566 1.04654 1.17214 0.80551 0.85441 0.79887 1.90745 1.60687 1.24028 1.69974 1.46179 1.29853 1.18922 1.38999 1.18445 0.92648 0.86865 0.85162 0.97987 1.21900 0.96116 1.00903 1.00233 1.21471 0.94554 1.15173 1.27735 0.91197 1.25823 1.03518 0.94255 0.94827 1.70047 1.38345 1.17569 1.29458 0.85339 0.78225 0.78346 0.78070 1.18792 1.20703 1.19609 0.86329 0.86279 0.87889 0.89397 0.89340 0.74950 0.85942 0.83101 0.82100 0.81241 0.82568 0.76135 0.96986 0.90855 0.94185 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 14.31 67.78 0.97 -1.33 16 2 C -0.18 -3.91 9.89 25.64 0.25 -3.65 16 3 C 0.08 1.67 5.56 71.24 0.40 2.06 16 4 O -0.30 -10.49 9.74 -92.21 -0.90 -11.39 16 5 C 0.06 1.91 7.05 22.58 0.16 2.07 16 6 C -0.08 -1.99 9.91 83.46 0.83 -1.16 16 7 N -0.21 -5.84 3.52 -186.81 -0.66 -6.50 16 8 C 0.10 2.16 6.66 38.12 0.25 2.41 16 9 C -0.13 -2.71 9.59 22.39 0.21 -2.50 16 10 C -0.10 -1.39 10.04 22.25 0.22 -1.16 16 11 C -0.11 -0.97 10.04 22.29 0.22 -0.75 16 12 C -0.09 -0.73 10.04 22.25 0.22 -0.51 16 13 C -0.12 -1.54 9.43 22.39 0.21 -1.33 16 14 N -0.25 -8.71 10.84 -48.05 -0.52 -9.23 16 15 C -0.04 -1.74 7.13 42.45 0.30 -1.44 16 16 C 0.58 29.40 7.78 86.68 0.67 30.07 16 17 O -0.58 -33.22 16.19 -1.87 -0.03 -33.25 16 18 N -0.69 -34.66 5.07 -449.33 -2.28 -36.94 16 19 C 0.27 15.59 2.56 44.24 0.11 15.71 16 20 H 0.00 0.15 7.58 -2.38 -0.02 0.13 16 21 C -0.13 -7.35 9.26 71.98 0.67 -6.69 16 22 C -0.55 -31.54 8.73 25.60 0.22 -31.31 16 23 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 24 C 0.02 0.90 5.30 84.66 0.45 1.35 16 25 N -0.92 -54.73 11.32 21.45 0.24 -54.49 16 26 Si 0.98 43.90 29.54 68.60 2.03 45.93 16 27 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.12 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.12 1.28 7.90 -2.91 -0.02 1.26 16 32 H 0.10 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.09 1.38 7.83 -2.38 -0.02 1.36 16 34 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 35 H 0.23 2.83 6.64 -2.91 -0.02 2.81 16 36 H 0.12 2.99 7.64 -2.91 -0.02 2.97 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 39 H 0.17 0.16 8.06 -2.91 -0.02 0.13 16 40 H 0.16 1.08 6.65 -2.91 -0.02 1.06 16 41 H 0.40 18.32 8.26 -92.71 -0.77 17.56 16 42 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 4.31 6.07 -2.39 -0.01 4.30 16 44 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -82.58 390.11 4.52 -78.05 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.25 Total: 25.96 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 6.39 Total: 1.85 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.21 Total: -107.15 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.93 Total: -44.64 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -82.58 4.52 -78.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610436378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.751 kcal (2) G-P(sol) polarization free energy of solvation -82.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds