Wall clock time and date at job start Wed Apr 1 2020 00:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47260 * 2 1 4 4 N 1.46899 * 109.47493 * 120.00850 * 2 1 3 5 5 C 1.46904 * 110.99490 * 275.00068 * 4 2 1 6 6 C 1.50701 * 109.46819 * 179.97438 * 5 4 2 7 7 C 1.38623 * 120.32257 * 89.99663 * 6 5 4 8 8 C 1.38592 * 118.48742 * 179.72479 * 7 6 5 9 9 C 1.39309 * 119.05598 * 359.97438 * 8 7 6 10 10 C 1.48179 * 119.71916 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99716 * 179.97438 * 10 9 8 12 12 O 1.21506 * 120.00016 * 0.02562 * 10 9 8 13 13 N 1.32710 * 120.55626 * 0.02562 * 9 8 7 14 14 C 1.31515 * 121.64447 * 359.97438 * 13 9 8 15 15 C 1.50707 * 109.46657 * 240.00401 * 2 1 3 16 16 C 1.38297 * 119.93050 * 279.72455 * 15 2 1 17 17 C 1.38105 * 120.06398 * 179.72839 * 16 15 2 18 18 C 1.38870 * 119.93385 * 0.54700 * 17 16 15 19 19 O 1.35754 * 120.07317 * 179.74643 * 18 17 16 20 20 C 1.34823 * 117.00238 * 174.43872 * 19 18 17 21 21 H 1.08003 * 120.00003 * 5.06369 * 20 19 18 22 22 C 1.38650 * 120.00164 * 185.05834 * 20 19 18 23 23 N 1.31556 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00080 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47066 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47216 * 120.00023 * 24 22 20 27 27 H 1.48501 * 109.46621 * 239.99752 * 24 22 20 28 28 C 1.38883 * 119.86358 * 359.72526 * 18 17 16 29 29 C 1.38107 * 119.92716 * 0.02562 * 28 18 17 30 30 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46806 * 299.99380 * 1 2 3 32 32 H 1.08998 * 109.47713 * 59.99481 * 1 2 3 33 33 H 1.00895 * 111.00263 * 151.04746 * 4 2 1 34 34 H 1.08996 * 109.47390 * 59.99702 * 5 4 2 35 35 H 1.09007 * 109.46740 * 299.99479 * 5 4 2 36 36 H 1.08001 * 120.75788 * 359.75068 * 7 6 5 37 37 H 1.08001 * 120.47448 * 179.97438 * 8 7 6 38 38 H 0.97003 * 120.00263 * 0.02562 * 11 10 9 39 39 H 0.96994 * 120.00033 * 179.97438 * 11 10 9 40 40 H 1.07998 * 119.55443 * 180.02562 * 14 13 9 41 41 H 1.07993 * 119.96537 * 0.02562 * 16 15 2 42 42 H 1.08001 * 120.03215 * 180.27316 * 17 16 15 43 43 H 0.97004 * 119.99940 * 180.02562 * 23 22 20 44 44 H 1.07998 * 120.03641 * 179.97438 * 28 18 17 45 45 H 1.07999 * 119.96243 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6927 1.1993 5 6 2.0825 0.2224 2.3468 6 6 2.5875 -0.5221 3.5559 7 6 3.9460 -0.5793 3.8257 8 6 4.3680 -1.2695 4.9510 9 6 3.4174 -1.8779 5.7676 10 6 3.8523 -2.6201 6.9741 11 7 2.9374 -3.2104 7.7683 12 8 5.0337 -2.6956 7.2479 13 7 2.1257 -1.7993 5.4734 14 6 1.6979 -1.1510 4.4122 15 6 2.0322 -0.7104 -1.2306 16 6 2.0713 -2.0924 -1.2619 17 6 2.5258 -2.7463 -2.3902 18 6 2.9544 -2.0145 -3.4899 19 8 3.4065 -2.6543 -4.5985 20 6 3.6982 -1.8900 -5.6702 21 1 3.6471 -0.8138 -5.5959 22 6 4.0638 -2.4856 -6.8677 23 7 4.1257 -3.7966 -6.9583 24 14 4.4686 -1.4266 -8.3524 25 1 4.3241 0.0068 -7.9921 26 1 5.8650 -1.6909 -8.7830 27 1 3.5379 -1.7539 -9.4623 28 6 2.9192 -0.6266 -3.4532 29 6 2.4589 0.0214 -2.3239 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.9173 -1.1206 1.0285 34 1 1.0872 0.6161 2.5525 35 1 2.7590 1.0460 2.1182 36 1 4.6593 -0.0966 3.1740 37 1 5.4189 -1.3347 5.1914 38 1 1.9942 -3.1498 7.5500 39 1 3.2221 -3.6965 8.5579 40 1 0.6388 -1.1080 4.2051 41 1 1.7416 -2.6609 -0.4049 42 1 2.5519 -3.8257 -2.4158 43 1 4.3819 -4.2134 -7.7959 44 1 3.2523 -0.0547 -4.3067 45 1 2.4309 1.1006 -2.2949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776162525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:31 Heat of formation + Delta-G solvation = -7.113169 kcal Electronic energy + Delta-G solvation = -27423.468986 eV Core-core repulsion = 23406.248191 eV Total energy + Delta-G solvation = -4017.220795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.97366 -39.36058 -39.09245 -37.62065 -35.81484 -34.22402 -33.17477 -32.38153 -32.12887 -30.33776 -29.95578 -28.00657 -26.41958 -25.42378 -24.08971 -23.26035 -22.33763 -21.75878 -21.09324 -20.02197 -18.58946 -17.98610 -17.61738 -17.14916 -16.49918 -16.32539 -15.51490 -15.35392 -15.24706 -14.95879 -14.62577 -14.53348 -14.16179 -14.01988 -13.71251 -13.65718 -13.53365 -13.45176 -13.00660 -12.86013 -12.62867 -12.37224 -12.07879 -11.84255 -11.70970 -11.34643 -11.25441 -10.80198 -10.77092 -10.68394 -10.46097 -10.42777 -10.23536 -10.07551 -9.94036 -9.43328 -9.37028 -8.87362 -8.55282 -8.22466 -7.23380 -6.49216 -4.08192 0.25414 0.86752 2.17322 2.23534 2.37788 3.02187 3.09029 3.10637 3.16171 3.48385 3.84790 3.92832 4.13530 4.41327 4.47864 4.50855 4.56377 4.60354 4.85509 5.00677 5.06495 5.17330 5.27870 5.37176 5.37482 5.41101 5.58508 5.62559 5.63707 5.80891 5.81921 5.88475 5.93862 6.18247 6.19197 6.32992 6.37005 6.39575 6.67646 6.77213 6.89653 6.92149 6.98299 7.19468 7.29323 7.37705 7.38754 7.42754 7.77953 7.85974 7.95722 8.96428 9.66316 10.68728 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.001831 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.204721 B =15285.617356 C =16062.387294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.144 3.856 3 H 0.043 0.957 4 N -0.678 5.678 5 C 0.096 3.904 6 C -0.101 4.101 7 C -0.077 4.077 8 C -0.107 4.107 9 C 0.066 3.934 10 C 0.579 3.421 11 N -0.836 5.836 12 O -0.538 6.538 13 N -0.460 5.460 14 C 0.119 3.881 15 C -0.196 4.196 16 C -0.055 4.055 17 C -0.195 4.195 18 C 0.156 3.844 19 O -0.177 6.177 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.235 4.235 29 C -0.064 4.064 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.348 0.652 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.412 0.588 39 H 0.404 0.596 40 H 0.165 0.835 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 8.031 23.127 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.035 3.965 3 H 0.061 0.939 4 N -0.311 5.311 5 C -0.033 4.033 6 C -0.104 4.104 7 C -0.103 4.103 8 C -0.128 4.128 9 C -0.073 4.073 10 C 0.363 3.637 11 N -0.399 5.399 12 O -0.414 6.414 13 N -0.171 5.171 14 C -0.042 4.042 15 C -0.197 4.197 16 C -0.073 4.073 17 C -0.214 4.214 18 C 0.102 3.898 19 O -0.080 6.080 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.254 4.254 29 C -0.083 4.083 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.242 0.758 39 H 0.235 0.765 40 H 0.182 0.818 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.072 6.998 23.658 25.407 hybrid contribution 1.215 1.314 -1.470 2.316 sum -4.857 8.312 22.188 24.186 Atomic orbital electron populations 1.21781 0.94359 1.02433 1.00498 1.20163 0.95259 0.94485 0.86594 0.93907 1.60677 1.34006 1.32345 1.04053 1.20926 1.01229 0.93036 0.88114 1.21117 0.94041 0.97995 0.97243 1.21606 0.95613 0.96892 0.96208 1.22102 1.01600 0.95289 0.93777 1.21004 0.89903 0.99749 0.96594 1.17899 0.85383 0.78215 0.82229 1.43635 1.11270 1.56081 1.28917 1.90836 1.16840 1.60979 1.72782 1.67518 1.15746 1.15525 1.18318 1.22669 1.00561 0.92056 0.88874 1.19218 1.10623 0.93780 0.96079 1.20484 0.97081 0.93353 0.96419 1.20259 1.08336 0.99448 0.93386 1.19431 0.91012 0.90939 0.88443 1.83981 1.70508 1.35381 1.18152 1.21372 1.47341 0.90773 0.87356 0.89015 1.25302 0.96765 0.96313 0.98170 1.70048 1.44031 1.08671 1.26838 0.85645 0.78419 0.79225 0.80123 1.19115 1.20123 1.20102 1.21124 1.09876 0.94416 1.00005 1.20575 0.96904 0.98089 0.92736 0.91875 0.93488 0.92535 0.83315 0.89499 0.93808 0.84022 0.83431 0.75752 0.76465 0.81765 0.86336 0.86583 0.92019 0.85613 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.39 37.16 0.35 -1.10 16 2 C 0.14 1.68 2.82 -68.86 -0.19 1.48 16 3 H 0.04 0.48 7.66 -51.93 -0.40 0.08 16 4 N -0.68 -6.92 5.67 -109.21 -0.62 -7.54 16 5 C 0.10 0.75 5.63 -4.97 -0.03 0.72 16 6 C -0.10 -0.82 5.42 -104.36 -0.57 -1.39 16 7 C -0.08 -0.63 9.85 -39.31 -0.39 -1.01 16 8 C -0.11 -1.00 9.63 -39.05 -0.38 -1.37 16 9 C 0.07 0.66 6.75 -83.01 -0.56 0.10 16 10 C 0.58 5.99 8.08 -12.18 -0.10 5.89 16 11 N -0.84 -5.55 8.86 30.61 0.27 -5.28 16 12 O -0.54 -7.24 17.16 5.36 0.09 -7.15 16 13 N -0.46 -4.26 9.54 -9.80 -0.09 -4.36 16 14 C 0.12 0.98 10.86 -17.57 -0.19 0.79 16 15 C -0.20 -3.03 4.72 -104.57 -0.49 -3.52 16 16 C -0.05 -0.92 8.99 -39.61 -0.36 -1.28 16 17 C -0.19 -3.99 9.99 -39.40 -0.39 -4.39 16 18 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 19 O -0.18 -4.98 9.76 0.06 0.00 -4.98 16 20 C -0.39 -10.80 9.49 30.88 0.29 -10.51 16 21 H 0.09 2.34 5.20 -52.48 -0.27 2.06 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -25.03 13.67 55.48 0.76 -24.28 16 24 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 28 C -0.23 -4.91 9.17 -39.39 -0.36 -5.27 16 29 C -0.06 -1.10 9.66 -39.61 -0.38 -1.48 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.42 7.45 -51.93 -0.39 0.03 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.35 3.87 7.97 -39.29 -0.31 3.55 16 34 H 0.09 0.60 7.38 -51.93 -0.38 0.21 16 35 H 0.04 0.33 8.01 -51.92 -0.42 -0.09 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.15 1.31 7.64 -52.49 -0.40 0.91 16 38 H 0.41 2.16 8.16 -40.82 -0.33 1.82 16 39 H 0.40 1.95 8.93 -40.82 -0.36 1.59 16 40 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.77 7.70 -52.49 -0.40 1.36 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 45 H 0.10 1.51 8.03 -52.49 -0.42 1.09 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -32.50 386.68 -8.53 -41.03 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.64 Total: 9.47 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -4.10 Total: -17.96 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.32 Total: -41.45 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.50 -8.53 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776162525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.915 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds