Wall clock time and date at job start Wed Apr 1 2020 00:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47260 * 2 1 4 4 N 1.46899 * 109.47493 * 120.00850 * 2 1 3 5 5 C 1.46904 * 110.99490 * 275.00068 * 4 2 1 6 6 C 1.50701 * 109.46819 * 179.97438 * 5 4 2 7 7 C 1.38623 * 120.32257 * 89.99663 * 6 5 4 8 8 C 1.38592 * 118.48742 * 179.72479 * 7 6 5 9 9 C 1.39309 * 119.05598 * 359.97438 * 8 7 6 10 10 C 1.48179 * 119.71916 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99716 * 179.97438 * 10 9 8 12 12 O 1.21506 * 120.00016 * 0.02562 * 10 9 8 13 13 N 1.32710 * 120.55626 * 0.02562 * 9 8 7 14 14 C 1.31515 * 121.64447 * 359.97438 * 13 9 8 15 15 C 1.50707 * 109.46657 * 240.00401 * 2 1 3 16 16 C 1.38297 * 119.93050 * 279.72455 * 15 2 1 17 17 C 1.38105 * 120.06398 * 179.72839 * 16 15 2 18 18 C 1.38870 * 119.93385 * 0.54700 * 17 16 15 19 19 O 1.35754 * 120.07317 * 179.74643 * 18 17 16 20 20 C 1.34823 * 117.00238 * 174.43872 * 19 18 17 21 21 H 1.08003 * 120.00003 * 5.06369 * 20 19 18 22 22 C 1.38650 * 120.00164 * 185.05834 * 20 19 18 23 23 N 1.31556 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00080 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47066 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47216 * 120.00023 * 24 22 20 27 27 H 1.48501 * 109.46621 * 239.99752 * 24 22 20 28 28 C 1.38883 * 119.86358 * 359.72526 * 18 17 16 29 29 C 1.38107 * 119.92716 * 0.02562 * 28 18 17 30 30 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46806 * 299.99380 * 1 2 3 32 32 H 1.08998 * 109.47713 * 59.99481 * 1 2 3 33 33 H 1.00895 * 111.00263 * 151.04746 * 4 2 1 34 34 H 1.08996 * 109.47390 * 59.99702 * 5 4 2 35 35 H 1.09007 * 109.46740 * 299.99479 * 5 4 2 36 36 H 1.08001 * 120.75788 * 359.75068 * 7 6 5 37 37 H 1.08001 * 120.47448 * 179.97438 * 8 7 6 38 38 H 0.97003 * 120.00263 * 0.02562 * 11 10 9 39 39 H 0.96994 * 120.00033 * 179.97438 * 11 10 9 40 40 H 1.07998 * 119.55443 * 180.02562 * 14 13 9 41 41 H 1.07993 * 119.96537 * 0.02562 * 16 15 2 42 42 H 1.08001 * 120.03215 * 180.27316 * 17 16 15 43 43 H 0.97004 * 119.99940 * 180.02562 * 23 22 20 44 44 H 1.07998 * 120.03641 * 179.97438 * 28 18 17 45 45 H 1.07999 * 119.96243 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6927 1.1993 5 6 2.0825 0.2224 2.3468 6 6 2.5875 -0.5221 3.5559 7 6 3.9460 -0.5793 3.8257 8 6 4.3680 -1.2695 4.9510 9 6 3.4174 -1.8779 5.7676 10 6 3.8523 -2.6201 6.9741 11 7 2.9374 -3.2104 7.7683 12 8 5.0337 -2.6956 7.2479 13 7 2.1257 -1.7993 5.4734 14 6 1.6979 -1.1510 4.4122 15 6 2.0322 -0.7104 -1.2306 16 6 2.0713 -2.0924 -1.2619 17 6 2.5258 -2.7463 -2.3902 18 6 2.9544 -2.0145 -3.4899 19 8 3.4065 -2.6543 -4.5985 20 6 3.6982 -1.8900 -5.6702 21 1 3.6471 -0.8138 -5.5959 22 6 4.0638 -2.4856 -6.8677 23 7 4.1257 -3.7966 -6.9583 24 14 4.4686 -1.4266 -8.3524 25 1 4.3241 0.0068 -7.9921 26 1 5.8650 -1.6909 -8.7830 27 1 3.5379 -1.7539 -9.4623 28 6 2.9192 -0.6266 -3.4532 29 6 2.4589 0.0214 -2.3239 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.9173 -1.1206 1.0285 34 1 1.0872 0.6161 2.5525 35 1 2.7590 1.0460 2.1182 36 1 4.6593 -0.0966 3.1740 37 1 5.4189 -1.3347 5.1914 38 1 1.9942 -3.1498 7.5500 39 1 3.2221 -3.6965 8.5579 40 1 0.6388 -1.1080 4.2051 41 1 1.7416 -2.6609 -0.4049 42 1 2.5519 -3.8257 -2.4158 43 1 4.3819 -4.2134 -7.7959 44 1 3.2523 -0.0547 -4.3067 45 1 2.4309 1.1006 -2.2949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776162525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:28 Heat of formation + Delta-G solvation = -31.267812 kcal Electronic energy + Delta-G solvation = -27424.516410 eV Core-core repulsion = 23406.248191 eV Total energy + Delta-G solvation = -4018.268219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.65700 -40.86148 -39.95063 -38.99782 -37.01130 -34.99021 -34.35848 -33.81349 -32.95311 -31.81747 -30.96506 -29.30351 -27.38627 -27.11248 -24.74820 -24.13647 -23.76721 -22.99519 -21.79922 -21.31018 -19.75662 -19.26554 -18.85353 -18.28942 -17.43044 -17.10452 -16.60923 -16.30010 -16.18807 -16.00715 -15.79682 -15.61124 -15.59299 -15.43989 -15.06994 -14.69382 -14.43384 -14.32981 -14.12301 -13.99769 -13.79334 -13.64508 -13.49891 -13.01153 -12.83935 -12.75205 -12.40682 -12.21388 -12.14038 -12.08188 -11.61677 -11.56962 -11.16682 -10.90805 -10.79619 -10.77549 -10.62109 -10.09376 -9.75573 -9.32194 -8.89521 -8.47263 -6.15322 -0.43836 0.23445 0.62066 0.70298 1.34800 1.43105 1.53083 1.63835 2.17312 2.36500 2.77008 2.83661 3.15912 3.22592 3.39529 3.54077 3.77020 3.85136 3.93254 3.96540 3.98890 4.13442 4.21944 4.25080 4.46203 4.56625 4.62989 4.69849 4.78198 4.78968 4.82540 4.99951 5.01296 5.07465 5.15805 5.17667 5.20068 5.31447 5.53093 5.57511 5.60061 5.72059 5.73677 5.78278 6.03581 6.18142 6.25686 6.26570 6.43327 6.74445 6.97742 7.20382 7.79717 8.76291 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.001831 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.204721 B =15285.617356 C =16062.387294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.149 3.851 3 H 0.063 0.937 4 N -0.682 5.682 5 C 0.101 3.899 6 C -0.099 4.099 7 C -0.076 4.076 8 C -0.119 4.119 9 C 0.049 3.951 10 C 0.573 3.427 11 N -0.816 5.816 12 O -0.579 6.579 13 N -0.465 5.465 14 C 0.115 3.885 15 C -0.163 4.163 16 C -0.045 4.045 17 C -0.208 4.208 18 C 0.113 3.887 19 O -0.235 6.235 20 C -0.411 4.411 21 H 0.102 0.898 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.019 2.981 25 H -0.250 1.250 26 H -0.269 1.269 27 H -0.269 1.269 28 C -0.243 4.243 29 C -0.062 4.062 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.343 0.657 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.421 0.579 39 H 0.414 0.586 40 H 0.187 0.813 41 H 0.145 0.855 42 H 0.107 0.893 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 11.092 24.970 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.040 3.960 3 H 0.081 0.919 4 N -0.314 5.314 5 C -0.028 4.028 6 C -0.101 4.101 7 C -0.102 4.102 8 C -0.140 4.140 9 C -0.088 4.088 10 C 0.357 3.643 11 N -0.380 5.380 12 O -0.459 6.459 13 N -0.176 5.176 14 C -0.046 4.046 15 C -0.164 4.164 16 C -0.063 4.063 17 C -0.228 4.228 18 C 0.062 3.938 19 O -0.142 6.142 20 C -0.487 4.487 21 H 0.120 0.880 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.838 3.162 25 H -0.173 1.173 26 H -0.194 1.194 27 H -0.194 1.194 28 C -0.263 4.263 29 C -0.080 4.080 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.176 0.824 37 H 0.162 0.838 38 H 0.253 0.747 39 H 0.246 0.754 40 H 0.204 0.796 41 H 0.162 0.838 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.815 10.080 25.585 28.588 hybrid contribution 1.558 0.456 -1.638 2.306 sum -6.257 10.537 23.946 26.900 Atomic orbital electron populations 1.21767 0.93227 1.02154 1.01800 1.20181 0.95958 0.94851 0.85039 0.91901 1.60660 1.33817 1.32930 1.04008 1.20980 1.02616 0.92594 0.86616 1.21188 0.93829 0.97747 0.97357 1.21827 0.96271 0.96331 0.95797 1.22197 1.01520 0.95845 0.94425 1.21042 0.90519 1.00434 0.96842 1.18096 0.85198 0.78305 0.82691 1.43518 1.11275 1.54707 1.28453 1.90809 1.18428 1.62759 1.73886 1.67527 1.15188 1.15979 1.18941 1.23102 1.01706 0.91358 0.88392 1.19771 1.06339 0.93282 0.97016 1.20758 0.95614 0.94333 0.95616 1.20488 1.08848 0.99393 0.94026 1.19973 0.92922 0.92566 0.88295 1.83944 1.73725 1.36870 1.19632 1.21854 1.47484 0.91441 0.87969 0.88033 1.26602 0.96512 0.97782 1.01343 1.70196 1.46977 1.10939 1.27905 0.84525 0.78280 0.77867 0.75504 1.17336 1.19435 1.19415 1.21232 1.10336 0.93372 1.01312 1.20963 0.95484 1.00049 0.91533 0.92980 0.90721 0.92857 0.83879 0.87686 0.92593 0.82353 0.83814 0.74698 0.75363 0.79609 0.83773 0.87482 0.91898 0.86551 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.39 71.98 0.68 -1.51 16 2 C 0.15 2.69 2.82 44.17 0.12 2.81 16 3 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 4 N -0.68 -10.60 5.67 -499.43 -2.83 -13.43 16 5 C 0.10 1.05 5.63 85.56 0.48 1.53 16 6 C -0.10 -1.24 5.42 -19.70 -0.11 -1.34 16 7 C -0.08 -1.05 9.85 22.45 0.22 -0.83 16 8 C -0.12 -2.10 9.63 22.61 0.22 -1.88 16 9 C 0.05 0.93 6.75 41.91 0.28 1.22 16 10 C 0.57 11.65 8.08 86.89 0.70 12.35 16 11 N -0.82 -10.03 8.86 -175.38 -1.55 -11.58 16 12 O -0.58 -15.86 17.16 -3.74 -0.06 -15.92 16 13 N -0.47 -7.64 9.54 -184.91 -1.76 -9.40 16 14 C 0.11 1.52 10.86 84.82 0.92 2.44 16 15 C -0.16 -4.46 4.72 -19.83 -0.09 -4.55 16 16 C -0.05 -1.42 8.99 22.25 0.20 -1.22 16 17 C -0.21 -8.70 9.99 22.39 0.22 -8.48 16 18 C 0.11 5.52 6.65 22.58 0.15 5.67 16 19 O -0.23 -14.12 9.76 -22.71 -0.22 -14.34 16 20 C -0.41 -23.84 9.49 67.92 0.64 -23.20 16 21 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 22 C -0.03 -1.43 5.49 84.83 0.47 -0.96 16 23 N -0.92 -56.73 13.67 21.61 0.30 -56.44 16 24 Si 1.02 42.64 29.55 68.60 2.03 44.67 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 28 C -0.24 -10.17 9.17 22.39 0.21 -9.97 16 29 C -0.06 -1.94 9.66 22.25 0.21 -1.72 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.88 7.45 -2.39 -0.02 0.86 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.34 6.15 7.97 -89.70 -0.72 5.43 16 34 H 0.10 0.79 7.38 -2.39 -0.02 0.77 16 35 H 0.06 0.51 8.01 -2.38 -0.02 0.49 16 36 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.14 2.57 7.64 -2.91 -0.02 2.54 16 38 H 0.42 3.76 8.16 -92.71 -0.76 3.01 16 39 H 0.41 3.59 8.93 -92.71 -0.83 2.76 16 40 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.14 3.85 7.70 -2.91 -0.02 3.83 16 42 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.12 5.00 5.64 -2.91 -0.02 4.99 16 45 H 0.14 3.42 8.03 -2.91 -0.02 3.40 16 Total: -1.00 -76.98 386.68 0.19 -76.79 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -1.23 Total: 29.30 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 5.53 Total: -29.64 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -5.86 Total: -90.86 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.29 Total: -30.26 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -76.98 0.19 -76.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776162525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.522 kcal (2) G-P(sol) polarization free energy of solvation -76.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds