Wall clock time and date at job start Wed Apr 1 2020 00:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.60061 * 2 1 4 4 C 1.52868 * 109.84306 * 239.67517 * 2 1 3 5 5 N 1.46944 * 109.73578 * 194.31614 * 4 2 1 6 6 C 1.34775 * 120.68265 * 246.05842 * 5 4 2 7 7 O 1.21277 * 120.00021 * 359.71210 * 6 5 4 8 8 C 1.50700 * 120.00122 * 179.71695 * 6 5 4 9 9 C 1.50697 * 109.47388 * 179.97438 * 8 6 5 10 10 C 1.38302 * 119.93023 * 269.72648 * 9 8 6 11 11 C 1.38100 * 120.06560 * 179.72117 * 10 9 8 12 12 C 1.38872 * 119.93255 * 0.55224 * 11 10 9 13 13 O 1.35752 * 120.07231 * 179.74532 * 12 11 10 14 14 C 1.34830 * 117.00237 * 174.43843 * 13 12 11 15 15 H 1.07989 * 120.00097 * 5.06218 * 14 13 12 16 16 C 1.38650 * 119.99851 * 185.05954 * 14 13 12 17 17 N 1.31562 * 120.00274 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99993 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46719 * 59.99845 * 18 16 14 20 20 H 1.48498 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.46841 * 300.00007 * 18 16 14 22 22 C 1.38877 * 119.86345 * 359.72079 * 12 11 10 23 23 C 1.38098 * 119.92984 * 0.02562 * 22 12 11 24 24 C 1.47445 * 118.63675 * 65.77464 * 5 4 2 25 25 C 1.51042 * 107.03782 * 315.15879 * 24 5 4 26 26 C 1.34472 * 128.46063 * 191.26596 * 25 24 5 27 27 N 1.35218 * 107.57142 * 180.09389 * 26 25 24 28 28 H 0.96999 * 125.99796 * 179.97438 * 27 26 25 29 29 N 1.40292 * 107.99496 * 359.97438 * 27 26 25 30 30 C 1.30239 * 108.17371 * 359.96369 * 29 27 26 31 31 H 1.08998 * 109.47302 * 299.67328 * 1 2 3 32 32 H 1.09000 * 109.46886 * 59.68148 * 1 2 3 33 33 H 1.09002 * 109.46666 * 179.67600 * 1 2 3 34 34 H 1.08998 * 109.34167 * 74.23365 * 4 2 1 35 35 H 1.09000 * 109.33571 * 314.39668 * 4 2 1 36 36 H 1.09006 * 109.47080 * 299.99879 * 8 6 5 37 37 H 1.09006 * 109.47429 * 59.99480 * 8 6 5 38 38 H 1.08000 * 119.96511 * 0.02562 * 10 9 8 39 39 H 1.08002 * 120.03051 * 180.27151 * 11 10 9 40 40 H 0.97002 * 120.00277 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.03718 * 180.02562 * 22 12 11 42 42 H 1.08002 * 119.96763 * 180.02562 * 23 22 12 43 43 H 1.09000 * 109.93434 * 74.54079 * 24 5 4 44 44 H 1.08999 * 109.93764 * 195.77142 * 24 5 4 45 45 H 1.07993 * 126.21359 * 0.05827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0489 -0.7260 -1.2412 5 7 3.4780 -1.0272 -1.0787 6 6 4.3987 -0.4400 -1.8686 7 8 4.0506 0.3421 -2.7276 8 6 5.8608 -0.7553 -1.6843 9 6 6.6731 0.0256 -2.6851 10 6 6.9537 -0.5221 -3.9237 11 6 7.6930 0.1933 -4.8450 12 6 8.1644 1.4592 -4.5225 13 8 8.8957 2.1628 -5.4242 14 6 9.2239 3.4278 -5.0925 15 1 8.9772 3.8106 -4.1133 16 6 9.8783 4.2371 -6.0085 17 7 10.1794 3.7706 -7.2013 18 14 10.3337 5.9895 -5.5488 19 1 11.2402 5.9729 -4.3727 20 1 11.0208 6.6390 -6.6938 21 1 9.1025 6.7492 -5.2141 22 6 7.8857 2.0040 -3.2759 23 6 7.1415 1.2858 -2.3608 24 6 3.8845 -1.9802 -0.0296 25 6 3.1123 -1.6211 1.2178 26 6 3.2955 -2.0683 2.4727 27 7 2.3687 -1.4736 3.2574 28 1 2.2601 -1.6062 4.2121 29 7 1.5916 -0.6313 2.4481 30 6 2.0363 -0.7176 1.2271 31 1 -0.3634 0.5087 0.8929 32 1 -0.3633 0.5188 -0.8871 33 1 -0.3633 -1.0277 -0.0058 34 1 1.9086 -0.0910 -2.1159 35 1 1.4946 -1.6551 -1.3740 36 1 6.1671 -0.4817 -0.6746 37 1 6.0246 -1.8221 -1.8371 38 1 6.5902 -1.5082 -4.1724 39 1 7.9081 -0.2331 -5.8137 40 1 10.6369 4.3369 -7.8423 41 1 8.2506 2.9884 -3.0223 42 1 6.9241 1.7091 -1.3913 43 1 3.6417 -2.9973 -0.3372 44 1 4.9547 -1.8928 0.1575 45 1 4.0462 -2.7746 2.7951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913592087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:29 Heat of formation + Delta-G solvation = 42.246882 kcal Electronic energy + Delta-G solvation = -28490.174153 eV Core-core repulsion = 24475.093771 eV Total energy + Delta-G solvation = -4015.080382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.87862 -39.87272 -38.79099 -36.92787 -36.19812 -34.38772 -32.39995 -31.40190 -31.32659 -30.53045 -30.07611 -27.63365 -26.40105 -25.52059 -24.80957 -23.35437 -21.90007 -21.05080 -20.84306 -19.87048 -18.66109 -18.07600 -17.89947 -16.97590 -16.86756 -16.03825 -15.82630 -15.30867 -14.77261 -14.59087 -14.51547 -14.24255 -13.97446 -13.70761 -13.59181 -13.42890 -13.24725 -13.19164 -13.12470 -12.62958 -12.42945 -12.29194 -12.14452 -11.81577 -11.71807 -11.44917 -11.32140 -11.19229 -10.88434 -10.76769 -10.67165 -10.56846 -10.38471 -9.77598 -9.64305 -9.26146 -8.94682 -8.75765 -8.70833 -8.07544 -7.09063 -6.38545 -3.97058 1.51875 2.30803 2.32733 2.33948 2.46664 2.78180 2.94877 3.17266 3.19457 3.21471 4.02440 4.10071 4.31804 4.48785 4.63098 4.71961 4.85940 4.97221 5.00563 5.10479 5.14848 5.17907 5.23328 5.31538 5.34627 5.39065 5.48615 5.49947 5.59215 5.69836 5.75680 5.79970 5.83192 5.91340 5.92778 6.20613 6.28709 6.38323 6.49223 6.77596 6.89749 6.98735 7.12193 7.27289 7.31173 7.39054 7.44534 7.52111 7.91357 8.06800 8.31875 9.07167 9.78224 10.79583 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002121 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.849276 B =13198.702977 C =13424.047338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 H 0.093 0.907 4 C 0.119 3.881 5 N -0.622 5.622 6 C 0.515 3.485 7 O -0.517 6.517 8 C -0.079 4.079 9 C -0.170 4.170 10 C -0.059 4.059 11 C -0.191 4.191 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.232 4.232 23 C -0.056 4.056 24 C 0.190 3.810 25 C -0.258 4.258 26 C 0.072 3.928 27 N -0.485 5.485 28 H 0.440 0.560 29 N -0.285 5.285 30 C 0.099 3.901 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 -14.492 20.337 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.049 4.049 3 H 0.112 0.888 4 C -0.004 4.004 5 N -0.357 5.357 6 C 0.304 3.696 7 O -0.391 6.391 8 C -0.118 4.118 9 C -0.171 4.171 10 C -0.078 4.078 11 C -0.211 4.211 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.251 4.251 23 C -0.075 4.075 24 C 0.066 3.934 25 C -0.270 4.270 26 C -0.075 4.075 27 N -0.193 5.193 28 H 0.284 0.716 29 N -0.107 5.107 30 C -0.071 4.071 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.025 -13.487 20.159 29.070 hybrid contribution 0.765 0.377 0.604 1.045 sum -15.260 -13.110 20.763 28.910 Atomic orbital electron populations 1.21708 0.92831 1.02387 1.02756 1.20057 0.96498 0.99254 0.89138 0.88848 1.21468 0.80825 1.00487 0.97619 1.48218 1.06614 1.45474 1.35377 1.21047 0.88212 0.79830 0.80508 1.90739 1.81439 1.33809 1.33103 1.20446 0.90041 1.01199 1.00139 1.18644 1.05905 0.96621 0.95910 1.20394 0.96701 0.98212 0.92451 1.20150 1.05593 0.94675 1.00637 1.19379 0.89589 0.91673 0.89092 1.83975 1.59358 1.25410 1.39468 1.21271 1.38552 0.85939 1.00920 0.89168 1.25275 0.96677 0.99800 0.94782 1.70033 1.37965 1.36869 1.05058 0.85795 0.78982 0.80543 0.78191 1.19557 1.20315 1.19511 1.21097 1.06950 1.02185 0.94907 1.20501 0.95872 0.93213 0.97888 1.20024 0.98332 0.92193 0.82830 1.20319 1.04013 1.07047 0.95653 1.21973 0.95369 0.99264 0.90863 1.46371 1.26325 1.35894 1.10669 0.71628 1.77063 1.17454 1.13912 1.02242 1.22190 0.94691 0.96801 0.93381 0.91616 0.91565 0.92416 0.87948 0.91030 0.89059 0.88931 0.87365 0.86569 0.92045 0.85652 0.87925 0.90557 0.88798 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.07 37.16 0.34 -0.76 16 2 C -0.03 -0.27 3.25 -91.74 -0.30 -0.57 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.20 5.64 -3.87 -0.02 1.18 16 5 N -0.62 -6.70 2.93 -173.81 -0.51 -7.21 16 6 C 0.52 7.29 7.70 -10.99 -0.08 7.20 16 7 O -0.52 -9.78 15.45 5.56 0.09 -9.69 16 8 C -0.08 -0.99 4.23 -29.04 -0.12 -1.11 16 9 C -0.17 -2.98 4.38 -104.58 -0.46 -3.44 16 10 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 11 C -0.19 -4.22 9.99 -39.40 -0.39 -4.62 16 12 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 13 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 14 C -0.39 -11.22 9.49 30.88 0.29 -10.93 16 15 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 18 Si 0.94 21.04 29.55 -169.99 -5.02 16.01 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 C -0.23 -5.28 9.17 -39.40 -0.36 -5.65 16 23 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 24 C 0.19 1.43 6.63 -4.51 -0.03 1.40 16 25 C -0.26 -2.15 5.99 -104.94 -0.63 -2.78 16 26 C 0.07 0.43 11.95 -17.39 -0.21 0.22 16 27 N -0.48 -3.33 7.37 30.34 0.22 -3.11 16 28 H 0.44 1.59 8.96 -182.45 -1.64 -0.05 16 29 N -0.28 -2.95 12.56 33.76 0.42 -2.53 16 30 C 0.10 1.00 6.48 -82.32 -0.53 0.47 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 1.19 7.00 -51.93 -0.36 0.82 16 35 H 0.07 0.60 8.07 -51.93 -0.42 0.19 16 36 H 0.09 0.96 7.51 -51.93 -0.39 0.57 16 37 H 0.09 0.90 8.03 -51.93 -0.42 0.49 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 42 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.56 6.17 -51.93 -0.32 0.24 16 45 H 0.18 0.35 8.06 -52.49 -0.42 -0.07 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -37.08 375.90 -9.06 -46.14 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.05 Total: 2.75 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -3.63 Total: -17.68 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.90 Total: -37.95 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.08 -9.06 -46.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913592087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.386 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds