Wall clock time and date at job start Wed Apr 1 2020 00:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.60061 * 2 1 4 4 C 1.52868 * 109.84306 * 239.67517 * 2 1 3 5 5 N 1.46944 * 109.73578 * 194.31614 * 4 2 1 6 6 C 1.34775 * 120.68265 * 246.05842 * 5 4 2 7 7 O 1.21277 * 120.00021 * 359.71210 * 6 5 4 8 8 C 1.50700 * 120.00122 * 179.71695 * 6 5 4 9 9 C 1.50697 * 109.47388 * 179.97438 * 8 6 5 10 10 C 1.38302 * 119.93023 * 269.72648 * 9 8 6 11 11 C 1.38100 * 120.06560 * 179.72117 * 10 9 8 12 12 C 1.38872 * 119.93255 * 0.55224 * 11 10 9 13 13 O 1.35752 * 120.07231 * 179.74532 * 12 11 10 14 14 C 1.34830 * 117.00237 * 174.43843 * 13 12 11 15 15 H 1.07989 * 120.00097 * 5.06218 * 14 13 12 16 16 C 1.38650 * 119.99851 * 185.05954 * 14 13 12 17 17 N 1.31562 * 120.00274 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99993 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46719 * 59.99845 * 18 16 14 20 20 H 1.48498 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.46841 * 300.00007 * 18 16 14 22 22 C 1.38877 * 119.86345 * 359.72079 * 12 11 10 23 23 C 1.38098 * 119.92984 * 0.02562 * 22 12 11 24 24 C 1.47445 * 118.63675 * 65.77464 * 5 4 2 25 25 C 1.51042 * 107.03782 * 315.15879 * 24 5 4 26 26 C 1.34472 * 128.46063 * 191.26596 * 25 24 5 27 27 N 1.35218 * 107.57142 * 180.09389 * 26 25 24 28 28 H 0.96999 * 125.99796 * 179.97438 * 27 26 25 29 29 N 1.40292 * 107.99496 * 359.97438 * 27 26 25 30 30 C 1.30239 * 108.17371 * 359.96369 * 29 27 26 31 31 H 1.08998 * 109.47302 * 299.67328 * 1 2 3 32 32 H 1.09000 * 109.46886 * 59.68148 * 1 2 3 33 33 H 1.09002 * 109.46666 * 179.67600 * 1 2 3 34 34 H 1.08998 * 109.34167 * 74.23365 * 4 2 1 35 35 H 1.09000 * 109.33571 * 314.39668 * 4 2 1 36 36 H 1.09006 * 109.47080 * 299.99879 * 8 6 5 37 37 H 1.09006 * 109.47429 * 59.99480 * 8 6 5 38 38 H 1.08000 * 119.96511 * 0.02562 * 10 9 8 39 39 H 1.08002 * 120.03051 * 180.27151 * 11 10 9 40 40 H 0.97002 * 120.00277 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.03718 * 180.02562 * 22 12 11 42 42 H 1.08002 * 119.96763 * 180.02562 * 23 22 12 43 43 H 1.09000 * 109.93434 * 74.54079 * 24 5 4 44 44 H 1.08999 * 109.93764 * 195.77142 * 24 5 4 45 45 H 1.07993 * 126.21359 * 0.05827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0489 -0.7260 -1.2412 5 7 3.4780 -1.0272 -1.0787 6 6 4.3987 -0.4400 -1.8686 7 8 4.0506 0.3421 -2.7276 8 6 5.8608 -0.7553 -1.6843 9 6 6.6731 0.0256 -2.6851 10 6 6.9537 -0.5221 -3.9237 11 6 7.6930 0.1933 -4.8450 12 6 8.1644 1.4592 -4.5225 13 8 8.8957 2.1628 -5.4242 14 6 9.2239 3.4278 -5.0925 15 1 8.9772 3.8106 -4.1133 16 6 9.8783 4.2371 -6.0085 17 7 10.1794 3.7706 -7.2013 18 14 10.3337 5.9895 -5.5488 19 1 11.2402 5.9729 -4.3727 20 1 11.0208 6.6390 -6.6938 21 1 9.1025 6.7492 -5.2141 22 6 7.8857 2.0040 -3.2759 23 6 7.1415 1.2858 -2.3608 24 6 3.8845 -1.9802 -0.0296 25 6 3.1123 -1.6211 1.2178 26 6 3.2955 -2.0683 2.4727 27 7 2.3687 -1.4736 3.2574 28 1 2.2601 -1.6062 4.2121 29 7 1.5916 -0.6313 2.4481 30 6 2.0363 -0.7176 1.2271 31 1 -0.3634 0.5087 0.8929 32 1 -0.3633 0.5188 -0.8871 33 1 -0.3633 -1.0277 -0.0058 34 1 1.9086 -0.0910 -2.1159 35 1 1.4946 -1.6551 -1.3740 36 1 6.1671 -0.4817 -0.6746 37 1 6.0246 -1.8221 -1.8371 38 1 6.5902 -1.5082 -4.1724 39 1 7.9081 -0.2331 -5.8137 40 1 10.6369 4.3369 -7.8423 41 1 8.2506 2.9884 -3.0223 42 1 6.9241 1.7091 -1.3913 43 1 3.6417 -2.9973 -0.3372 44 1 4.9547 -1.8928 0.1575 45 1 4.0462 -2.7746 2.7951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913592087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:28 Heat of formation + Delta-G solvation = 16.746497 kcal Electronic energy + Delta-G solvation = -28491.279933 eV Core-core repulsion = 24475.093771 eV Total energy + Delta-G solvation = -4016.186162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.47396 -41.05753 -40.39056 -38.33110 -37.42249 -35.16013 -34.36183 -32.77414 -31.99698 -31.74379 -31.21583 -28.78280 -27.57585 -26.92312 -25.96417 -24.10992 -23.60154 -22.42206 -21.48244 -20.85395 -19.82303 -19.41722 -18.88472 -18.59529 -17.87840 -16.97557 -16.73700 -16.37793 -16.25202 -15.94833 -15.80924 -15.47868 -15.35973 -15.09788 -14.62569 -14.54724 -14.33510 -14.25840 -14.00711 -13.89689 -13.69666 -13.57438 -13.01303 -12.94967 -12.80019 -12.74575 -12.47451 -12.40339 -12.26692 -12.19602 -12.12867 -12.00474 -11.49405 -11.15647 -10.86913 -10.69709 -10.39129 -9.73292 -9.71158 -9.33454 -8.86353 -8.45755 -6.13759 0.65157 0.70793 1.00615 1.34053 1.45240 1.50691 1.73081 1.74653 1.98488 2.10449 2.18788 2.85241 3.17884 3.50379 3.55802 3.73723 3.81844 3.94187 3.99194 4.08670 4.21017 4.23459 4.30488 4.47824 4.51288 4.55939 4.59729 4.64253 4.70060 4.74078 4.80502 4.83750 4.89392 4.97788 5.05463 5.09548 5.14785 5.17205 5.25551 5.34051 5.52677 5.60721 5.64943 5.74644 5.81914 6.04766 6.25908 6.48586 6.51615 6.74704 6.98732 7.30815 7.80674 8.77486 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.002121 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.849276 B =13198.702977 C =13424.047338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.026 4.026 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.613 5.613 6 C 0.514 3.486 7 O -0.580 6.580 8 C -0.076 4.076 9 C -0.143 4.143 10 C -0.055 4.055 11 C -0.206 4.206 12 C 0.111 3.889 13 O -0.233 6.233 14 C -0.414 4.414 15 H 0.099 0.901 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.255 1.255 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.244 4.244 23 C -0.062 4.062 24 C 0.187 3.813 25 C -0.282 4.282 26 C 0.094 3.906 27 N -0.478 5.478 28 H 0.452 0.548 29 N -0.324 5.324 30 C 0.078 3.922 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.113 0.887 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.134 0.866 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.991 -17.053 24.134 33.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 H 0.088 0.912 4 C -0.003 4.003 5 N -0.346 5.346 6 C 0.304 3.696 7 O -0.458 6.458 8 C -0.115 4.115 9 C -0.144 4.144 10 C -0.073 4.073 11 C -0.225 4.225 12 C 0.061 3.939 13 O -0.140 6.140 14 C -0.490 4.490 15 H 0.116 0.884 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.185 1.185 22 C -0.264 4.264 23 C -0.080 4.080 24 C 0.065 3.935 25 C -0.294 4.294 26 C -0.053 4.053 27 N -0.188 5.188 28 H 0.299 0.701 29 N -0.146 5.146 30 C -0.090 4.090 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.151 0.849 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -16.835 -16.119 24.052 33.492 hybrid contribution 0.748 0.854 -0.282 1.170 sum -16.087 -15.264 23.770 32.509 Atomic orbital electron populations 1.21642 0.91901 1.02767 1.02658 1.19941 0.97322 0.97994 0.89440 0.91165 1.21464 0.80954 1.00995 0.96875 1.48238 1.06305 1.44933 1.35127 1.21211 0.89098 0.79183 0.80124 1.90741 1.82388 1.36734 1.35977 1.20584 0.87951 1.02897 1.00061 1.19262 1.03161 0.95754 0.96247 1.20889 0.94940 0.99535 0.91967 1.20454 1.06225 0.94120 1.01678 1.19943 0.91155 0.92925 0.89885 1.83934 1.62314 1.26167 1.41627 1.21761 1.39085 0.86509 1.01674 0.88399 1.26594 0.96307 1.04716 0.94510 1.70182 1.40153 1.38982 1.06635 0.84660 0.79086 0.74039 0.78481 1.17928 1.19397 1.18541 1.21207 1.07851 1.02323 0.94987 1.20903 0.94782 0.93824 0.98450 1.20376 0.99554 0.92251 0.81315 1.20522 1.04141 1.07725 0.97025 1.22647 0.94756 0.98218 0.89678 1.46456 1.25928 1.35034 1.11364 0.70089 1.76990 1.19147 1.15658 1.02855 1.22264 0.95788 0.97722 0.93241 0.92340 0.90993 0.91727 0.90188 0.89075 0.85681 0.84538 0.83250 0.86936 0.91847 0.86700 0.84855 0.88092 0.86446 0.75764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.07 71.98 0.65 -1.37 16 2 C -0.03 -0.48 3.25 -11.52 -0.04 -0.51 16 3 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.12 2.25 5.64 86.25 0.49 2.73 16 5 N -0.61 -11.13 2.93 -822.21 -2.41 -13.54 16 6 C 0.51 12.86 7.70 87.66 0.67 13.53 16 7 O -0.58 -21.30 15.45 -3.02 -0.05 -21.35 16 8 C -0.08 -1.50 4.23 29.10 0.12 -1.37 16 9 C -0.14 -4.57 4.38 -19.83 -0.09 -4.65 16 10 C -0.06 -1.93 9.69 22.25 0.22 -1.72 16 11 C -0.21 -9.27 9.99 22.39 0.22 -9.05 16 12 C 0.11 5.87 6.65 22.57 0.15 6.02 16 13 O -0.23 -14.75 9.76 -22.76 -0.22 -14.97 16 14 C -0.41 -25.25 9.49 67.92 0.64 -24.60 16 15 H 0.10 5.52 5.20 -2.92 -0.02 5.51 16 16 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 17 N -0.92 -58.32 13.67 21.61 0.30 -58.03 16 18 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 22 C -0.24 -11.42 9.17 22.39 0.21 -11.21 16 23 C -0.06 -2.27 9.69 22.25 0.22 -2.06 16 24 C 0.19 1.80 6.63 85.56 0.57 2.37 16 25 C -0.28 -3.52 5.99 -20.07 -0.12 -3.64 16 26 C 0.09 0.65 11.95 83.31 1.00 1.65 16 27 N -0.48 -4.97 7.37 -57.94 -0.43 -5.40 16 28 H 0.45 1.81 8.96 -213.20 -1.91 -0.10 16 29 N -0.32 -6.12 12.56 -47.12 -0.59 -6.71 16 30 C 0.08 1.42 6.48 43.41 0.28 1.71 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.87 7.00 -2.39 -0.02 1.85 16 35 H 0.09 1.33 8.07 -2.39 -0.02 1.31 16 36 H 0.13 1.76 7.51 -2.38 -0.02 1.74 16 37 H 0.14 1.63 8.03 -2.38 -0.02 1.61 16 38 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 42 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.12 0.58 6.17 -2.39 -0.01 0.56 16 45 H 0.23 -0.68 8.06 -2.91 -0.02 -0.71 16 Total: -1.00 -90.24 375.90 3.41 -86.83 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.87 Total: 19.74 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 5.66 Total: -33.14 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.14 Total: -83.69 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.27 Total: -36.32 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -90.24 3.41 -86.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913592087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.581 kcal (2) G-P(sol) polarization free energy of solvation -90.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds