Wall clock time and date at job start Wed Apr 1 2020 00:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.64217 * 2 1 4 4 C 1.54327 * 110.72221 * 236.86205 * 2 1 3 5 5 N 1.47017 * 107.27039 * 219.44028 * 4 2 1 6 6 C 1.34781 * 125.64632 * 178.97311 * 5 4 2 7 7 O 1.21646 * 120.00176 * 354.74038 * 6 5 4 8 8 C 1.47150 * 119.99889 * 174.73974 * 6 5 4 9 9 C 1.39038 * 121.09964 * 322.26026 * 8 6 5 10 10 N 1.32075 * 121.40544 * 179.70042 * 9 8 6 11 11 C 1.31828 * 123.59972 * 0.60518 * 10 9 8 12 12 O 1.35251 * 119.61388 * 179.67237 * 11 10 9 13 13 C 1.41178 * 120.77523 * 359.69947 * 11 10 9 14 14 C 1.40128 * 122.10819 * 180.02562 * 13 11 10 15 15 C 1.36359 * 119.50623 * 179.97438 * 14 13 11 16 16 C 1.39178 * 121.05477 * 359.97438 * 15 14 13 17 17 C 1.36518 * 120.89468 * 0.04899 * 16 15 14 18 18 C 1.39606 * 119.43537 * 359.95235 * 17 16 15 19 19 C 1.47424 * 108.70475 * 358.94035 * 5 4 2 20 20 C 1.54909 * 104.83090 * 24.12741 * 19 5 4 21 21 H 1.09002 * 111.00108 * 204.91442 * 20 19 5 22 22 N 1.46503 * 111.00205 * 81.06612 * 20 19 5 23 23 C 1.36930 * 120.00008 * 92.80453 * 22 20 19 24 24 H 1.08004 * 120.00491 * 359.97438 * 23 22 20 25 25 C 1.38821 * 119.99978 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99894 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00089 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47016 * 90.00127 * 27 25 23 29 29 H 1.48497 * 109.47314 * 209.99945 * 27 25 23 30 30 H 1.48503 * 109.47366 * 330.00199 * 27 25 23 31 31 H 1.09002 * 109.46716 * 181.68214 * 1 2 3 32 32 H 1.09002 * 109.47140 * 61.68633 * 1 2 3 33 33 H 1.08992 * 109.47094 * 301.68095 * 1 2 3 34 34 H 1.08997 * 109.88077 * 338.85875 * 4 2 1 35 35 H 1.09004 * 109.88240 * 99.86954 * 4 2 1 36 36 H 1.08003 * 119.29568 * 359.97438 * 9 8 6 37 37 H 0.96698 * 114.00026 * 270.03036 * 12 11 10 38 38 H 1.08004 * 120.24558 * 359.95496 * 14 13 11 39 39 H 1.08003 * 119.46872 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.55073 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.27632 * 179.97438 * 17 16 15 42 42 H 1.09000 * 110.36546 * 142.96805 * 19 5 4 43 43 H 1.08992 * 110.36622 * 265.17787 * 19 5 4 44 44 H 0.96996 * 119.99855 * 272.79784 * 22 20 19 45 45 H 0.96995 * 119.99942 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2087 5 7 3.2445 -1.5493 -0.7417 6 6 3.9924 -2.3809 -1.4940 7 8 3.6637 -2.6265 -2.6391 8 6 5.2065 -2.9917 -0.9299 9 6 6.0382 -2.2784 -0.0741 10 7 7.1262 -2.8225 0.4402 11 6 7.5160 -4.0556 0.1844 12 8 8.6491 -4.5295 0.7507 13 6 6.7648 -4.8872 -0.6743 14 6 7.1528 -6.2019 -0.9650 15 6 6.3868 -6.9588 -1.8016 16 6 5.2248 -6.4466 -2.3713 17 6 4.8194 -5.1697 -2.1089 18 6 5.5820 -4.3693 -1.2564 19 6 3.4633 -1.2508 0.6853 20 6 2.0790 -0.7975 1.2123 21 1 2.1850 -0.1554 2.0868 22 7 1.2272 -1.9515 1.5110 23 6 1.2023 -2.4748 2.7761 24 1 1.8108 -2.0372 3.5537 25 6 0.3948 -3.5679 3.0592 26 7 -0.3472 -4.1010 2.1117 27 14 0.3613 -4.2824 4.7849 28 1 -0.6976 -3.6089 5.5790 29 1 0.0755 -5.7378 4.7126 30 1 1.6792 -4.0684 5.4350 31 1 -0.3633 -1.0273 0.0302 32 1 -0.3633 0.4874 -0.9047 33 1 -0.3633 0.5397 0.8745 34 1 1.3130 -1.4731 -1.5801 35 1 2.3716 -0.0990 -1.9990 36 1 5.7869 -1.2589 0.1789 37 1 9.4458 -4.3759 0.2246 38 1 8.0520 -6.6126 -0.5300 39 1 6.6862 -7.9722 -2.0249 40 1 4.6366 -7.0674 -3.0309 41 1 3.9162 -4.7823 -2.5568 42 1 3.7961 -2.1446 1.2131 43 1 4.1946 -0.4505 0.7977 44 1 0.6809 -2.3447 0.8126 45 1 -0.9111 -4.8650 2.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939256892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:50 Heat of formation + Delta-G solvation = 6.289437 kcal Electronic energy + Delta-G solvation = -30003.597719 eV Core-core repulsion = 25986.958105 eV Total energy + Delta-G solvation = -4016.639614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.11699 -39.68233 -38.13266 -37.52733 -36.75492 -33.94202 -32.62547 -31.99979 -31.27694 -30.54832 -29.57503 -27.86520 -26.24222 -24.57470 -23.93116 -23.64737 -22.75772 -21.84247 -19.69009 -19.30704 -19.04721 -17.87845 -17.75870 -17.33620 -16.67845 -16.03935 -15.76150 -15.31176 -15.04677 -14.76453 -14.38064 -14.25432 -13.95300 -13.87731 -13.40041 -13.31897 -12.96357 -12.88685 -12.71382 -12.23777 -12.16339 -12.06490 -12.00434 -11.87518 -11.58211 -11.40165 -11.13155 -10.94518 -10.74791 -10.50371 -10.30161 -10.08361 -9.97274 -9.93826 -9.67645 -9.35736 -9.22765 -9.06336 -8.34172 -8.05796 -7.06105 -5.84970 -3.14916 -0.00906 0.78011 1.59429 2.67987 3.01694 3.27399 3.34918 3.39131 3.45258 3.46376 3.92358 4.38530 4.43732 4.51935 4.57386 4.73705 4.80215 4.92762 5.06374 5.12687 5.15953 5.28879 5.31139 5.49911 5.51485 5.57434 5.60185 5.71312 5.83550 5.90080 5.91881 5.96923 6.11921 6.18290 6.20731 6.30054 6.32714 6.34032 6.37122 6.47754 6.56713 6.71591 6.72083 6.92520 7.22555 7.62903 7.73759 7.78408 8.32510 8.33769 9.44763 9.98996 10.33549 11.36935 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.004162 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.257162 B = 6725.529667 C = 7812.321530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.582 3.418 7 O -0.545 6.545 8 C -0.165 4.165 9 C 0.141 3.859 10 N -0.512 5.512 11 C 0.373 3.627 12 O -0.475 6.475 13 C -0.126 4.126 14 C -0.083 4.083 15 C -0.120 4.120 16 C -0.093 4.093 17 C -0.100 4.100 18 C 0.024 3.976 19 C 0.062 3.938 20 C 0.173 3.827 21 H 0.077 0.923 22 N -0.707 5.707 23 C -0.248 4.248 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.928 5.928 27 Si 0.905 3.095 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.167 0.833 37 H 0.404 0.596 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.619 1.826 -8.708 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.099 0.901 4 C -0.005 4.005 5 N -0.325 5.325 6 C 0.370 3.630 7 O -0.424 6.424 8 C -0.170 4.170 9 C -0.004 4.004 10 N -0.231 5.231 11 C 0.181 3.819 12 O -0.282 6.282 13 C -0.129 4.129 14 C -0.102 4.102 15 C -0.138 4.138 16 C -0.112 4.112 17 C -0.117 4.117 18 C 0.018 3.982 19 C -0.064 4.064 20 C 0.059 3.941 21 H 0.095 0.905 22 N -0.347 5.347 23 C -0.379 4.379 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.575 5.575 27 Si 0.736 3.264 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.184 0.816 37 H 0.263 0.737 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.223 0.777 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.545 1.968 -8.170 16.798 hybrid contribution -0.295 -1.024 0.024 1.066 sum 14.250 0.944 -8.145 16.441 Atomic orbital electron populations 1.21611 0.93356 1.03469 1.00566 1.22555 0.97255 0.98525 0.95167 0.90138 1.21995 0.87577 0.94276 0.96687 1.48222 1.29150 1.43304 1.11789 1.17274 0.82407 0.78351 0.84974 1.90747 1.71999 1.61609 1.18070 1.21823 0.98033 0.94804 1.02333 1.22591 0.88098 0.99583 0.90123 1.66575 1.18698 1.13270 1.24513 1.19345 0.88012 0.87129 0.87450 1.84638 1.15850 1.78623 1.49104 1.18837 0.97234 0.96675 1.00193 1.20877 1.00144 0.92019 0.97199 1.20965 0.95165 1.00228 0.97472 1.21132 0.96108 0.95323 0.98615 1.21262 1.00329 0.93622 0.96532 1.18729 0.92711 0.91905 0.94813 1.23657 1.01663 1.00838 0.80280 1.21349 0.88236 0.89983 0.94482 0.90538 1.42364 1.49416 1.32569 1.10350 1.19232 1.21285 1.09961 0.87375 0.90977 1.24742 0.99359 0.98647 0.97602 1.69658 1.30561 1.25620 1.31683 0.86225 0.77693 0.78334 0.84138 1.21578 1.21786 1.20678 0.90942 0.93736 0.92263 0.91185 0.92035 0.81641 0.73727 0.84548 0.85340 0.85154 0.83385 0.90029 0.92274 0.77738 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.80 37.16 0.33 -1.71 16 2 C -0.11 -1.71 3.42 -88.79 -0.30 -2.01 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.86 6.46 -3.06 -0.02 1.84 16 5 N -0.59 -10.13 3.33 -171.89 -0.57 -10.70 16 6 C 0.58 10.56 7.26 -12.64 -0.09 10.47 16 7 O -0.54 -10.94 15.24 5.24 0.08 -10.86 16 8 C -0.16 -2.75 5.54 -102.67 -0.57 -3.32 16 9 C 0.14 2.12 9.40 -17.15 -0.16 1.95 16 10 N -0.51 -7.71 10.25 -12.66 -0.13 -7.84 16 11 C 0.37 5.11 7.79 -16.44 -0.13 4.98 16 12 O -0.47 -5.03 12.80 -17.45 -0.22 -5.26 16 13 C -0.13 -1.76 5.75 -106.77 -0.61 -2.37 16 14 C -0.08 -0.93 9.58 -39.55 -0.38 -1.30 16 15 C -0.12 -1.27 9.95 -39.91 -0.40 -1.67 16 16 C -0.09 -1.13 9.96 -39.85 -0.40 -1.53 16 17 C -0.10 -1.54 9.26 -39.69 -0.37 -1.90 16 18 C 0.02 0.38 5.90 -104.78 -0.62 -0.24 16 19 C 0.06 1.02 4.95 -2.53 -0.01 1.00 16 20 C 0.17 3.08 3.47 -65.78 -0.23 2.85 16 21 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 22 N -0.71 -16.42 4.56 -51.35 -0.23 -16.65 16 23 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 24 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 27 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.07 1.35 6.34 -51.93 -0.33 1.02 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.24 7.82 -51.93 -0.41 0.83 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.17 2.17 5.91 -52.48 -0.31 1.86 16 37 H 0.40 1.98 9.06 45.56 0.41 2.39 16 38 H 0.14 1.15 7.66 -52.48 -0.40 0.75 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.15 2.50 6.13 -52.48 -0.32 2.18 16 42 H 0.08 1.56 7.32 -51.93 -0.38 1.18 16 43 H 0.06 0.78 6.98 -51.93 -0.36 0.42 16 44 H 0.39 9.81 6.32 -40.82 -0.26 9.55 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -33.51 369.52 -8.88 -42.38 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -4.86 Total: 12.86 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -4.21 Total: 0.10 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.21 Total: -61.82 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.14 Total: -16.12 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.51 -8.88 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939256892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.673 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds