Wall clock time and date at job start Wed Apr 1 2020 00:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.64217 * 2 1 4 4 C 1.54327 * 110.72221 * 236.86205 * 2 1 3 5 5 N 1.47017 * 107.27039 * 219.44028 * 4 2 1 6 6 C 1.34781 * 125.64632 * 178.97311 * 5 4 2 7 7 O 1.21646 * 120.00176 * 354.74038 * 6 5 4 8 8 C 1.47150 * 119.99889 * 174.73974 * 6 5 4 9 9 C 1.39038 * 121.09964 * 322.26026 * 8 6 5 10 10 N 1.32075 * 121.40544 * 179.70042 * 9 8 6 11 11 C 1.31828 * 123.59972 * 0.60518 * 10 9 8 12 12 O 1.35251 * 119.61388 * 179.67237 * 11 10 9 13 13 C 1.41178 * 120.77523 * 359.69947 * 11 10 9 14 14 C 1.40128 * 122.10819 * 180.02562 * 13 11 10 15 15 C 1.36359 * 119.50623 * 179.97438 * 14 13 11 16 16 C 1.39178 * 121.05477 * 359.97438 * 15 14 13 17 17 C 1.36518 * 120.89468 * 0.04899 * 16 15 14 18 18 C 1.39606 * 119.43537 * 359.95235 * 17 16 15 19 19 C 1.47424 * 108.70475 * 358.94035 * 5 4 2 20 20 C 1.54909 * 104.83090 * 24.12741 * 19 5 4 21 21 H 1.09002 * 111.00108 * 204.91442 * 20 19 5 22 22 N 1.46503 * 111.00205 * 81.06612 * 20 19 5 23 23 C 1.36930 * 120.00008 * 92.80453 * 22 20 19 24 24 H 1.08004 * 120.00491 * 359.97438 * 23 22 20 25 25 C 1.38821 * 119.99978 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99894 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00089 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47016 * 90.00127 * 27 25 23 29 29 H 1.48497 * 109.47314 * 209.99945 * 27 25 23 30 30 H 1.48503 * 109.47366 * 330.00199 * 27 25 23 31 31 H 1.09002 * 109.46716 * 181.68214 * 1 2 3 32 32 H 1.09002 * 109.47140 * 61.68633 * 1 2 3 33 33 H 1.08992 * 109.47094 * 301.68095 * 1 2 3 34 34 H 1.08997 * 109.88077 * 338.85875 * 4 2 1 35 35 H 1.09004 * 109.88240 * 99.86954 * 4 2 1 36 36 H 1.08003 * 119.29568 * 359.97438 * 9 8 6 37 37 H 0.96698 * 114.00026 * 270.03036 * 12 11 10 38 38 H 1.08004 * 120.24558 * 359.95496 * 14 13 11 39 39 H 1.08003 * 119.46872 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.55073 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.27632 * 179.97438 * 17 16 15 42 42 H 1.09000 * 110.36546 * 142.96805 * 19 5 4 43 43 H 1.08992 * 110.36622 * 265.17787 * 19 5 4 44 44 H 0.96996 * 119.99855 * 272.79784 * 22 20 19 45 45 H 0.96995 * 119.99942 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2087 5 7 3.2445 -1.5493 -0.7417 6 6 3.9924 -2.3809 -1.4940 7 8 3.6637 -2.6265 -2.6391 8 6 5.2065 -2.9917 -0.9299 9 6 6.0382 -2.2784 -0.0741 10 7 7.1262 -2.8225 0.4402 11 6 7.5160 -4.0556 0.1844 12 8 8.6491 -4.5295 0.7507 13 6 6.7648 -4.8872 -0.6743 14 6 7.1528 -6.2019 -0.9650 15 6 6.3868 -6.9588 -1.8016 16 6 5.2248 -6.4466 -2.3713 17 6 4.8194 -5.1697 -2.1089 18 6 5.5820 -4.3693 -1.2564 19 6 3.4633 -1.2508 0.6853 20 6 2.0790 -0.7975 1.2123 21 1 2.1850 -0.1554 2.0868 22 7 1.2272 -1.9515 1.5110 23 6 1.2023 -2.4748 2.7761 24 1 1.8108 -2.0372 3.5537 25 6 0.3948 -3.5679 3.0592 26 7 -0.3472 -4.1010 2.1117 27 14 0.3613 -4.2824 4.7849 28 1 -0.6976 -3.6089 5.5790 29 1 0.0755 -5.7378 4.7126 30 1 1.6792 -4.0684 5.4350 31 1 -0.3633 -1.0273 0.0302 32 1 -0.3633 0.4874 -0.9047 33 1 -0.3633 0.5397 0.8745 34 1 1.3130 -1.4731 -1.5801 35 1 2.3716 -0.0990 -1.9990 36 1 5.7869 -1.2589 0.1789 37 1 9.4458 -4.3759 0.2246 38 1 8.0520 -6.6126 -0.5300 39 1 6.6862 -7.9722 -2.0249 40 1 4.6366 -7.0674 -3.0309 41 1 3.9162 -4.7823 -2.5568 42 1 3.7961 -2.1446 1.2131 43 1 4.1946 -0.4505 0.7977 44 1 0.6809 -2.3447 0.8126 45 1 -0.9111 -4.8650 2.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939256892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:49 Heat of formation + Delta-G solvation = -19.087557 kcal Electronic energy + Delta-G solvation = -30004.698148 eV Core-core repulsion = 25986.958105 eV Total energy + Delta-G solvation = -4017.740043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20291 -40.97234 -39.21269 -38.79003 -37.78461 -35.71056 -34.06930 -33.11808 -32.28944 -32.26956 -30.66041 -29.44372 -27.49677 -25.94708 -25.50925 -24.76703 -23.92037 -23.12042 -20.86952 -20.68720 -20.13230 -19.41533 -18.92327 -18.62046 -17.86208 -17.47610 -16.81598 -16.60510 -16.47477 -16.05199 -15.69850 -15.64272 -15.31333 -15.02555 -14.79995 -14.57624 -14.40170 -14.08837 -14.03693 -13.50538 -13.43433 -13.19656 -13.03148 -13.00517 -12.93950 -12.89093 -12.82497 -12.40480 -12.27991 -12.16305 -11.98958 -11.50040 -11.41862 -11.25411 -11.07117 -10.96293 -10.52996 -10.23342 -9.75066 -9.14755 -8.95650 -7.94871 -5.22397 -1.06463 -0.25134 0.55323 1.45497 1.46325 1.48437 1.53998 1.82185 2.08142 2.37481 2.54495 2.86070 3.24626 3.34346 3.38054 3.52168 3.62035 3.78400 3.83551 3.90479 3.93434 4.06061 4.11130 4.21251 4.34536 4.39723 4.47515 4.56705 4.63011 4.65074 4.70751 4.85054 4.90070 4.94115 4.98307 4.99751 5.18818 5.21461 5.25448 5.32620 5.37755 5.41919 5.52361 5.61165 5.77450 6.26544 6.41274 6.48165 6.70534 6.98337 7.33781 8.09457 8.31013 9.28509 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.004162 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.257162 B = 6725.529667 C = 7812.321530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 H 0.124 0.876 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.577 3.423 7 O -0.577 6.577 8 C -0.202 4.202 9 C 0.152 3.848 10 N -0.534 5.534 11 C 0.390 3.610 12 O -0.472 6.472 13 C -0.144 4.144 14 C -0.071 4.071 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.142 4.142 18 C 0.002 3.998 19 C 0.073 3.927 20 C 0.159 3.841 21 H 0.092 0.908 22 N -0.720 5.720 23 C -0.234 4.234 24 H 0.082 0.918 25 C -0.073 4.073 26 N -0.969 5.969 27 Si 0.964 3.036 28 H -0.285 1.285 29 H -0.303 1.303 30 H -0.270 1.270 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.181 0.819 37 H 0.431 0.569 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.153 0.847 41 H 0.118 0.882 42 H 0.052 0.948 43 H 0.103 0.897 44 H 0.373 0.627 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.548 2.152 -7.941 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.117 4.117 3 H 0.142 0.858 4 C -0.007 4.007 5 N -0.327 5.327 6 C 0.367 3.633 7 O -0.459 6.459 8 C -0.207 4.207 9 C 0.007 3.993 10 N -0.254 5.254 11 C 0.197 3.803 12 O -0.284 6.284 13 C -0.148 4.148 14 C -0.090 4.090 15 C -0.136 4.136 16 C -0.099 4.099 17 C -0.160 4.160 18 C -0.003 4.003 19 C -0.052 4.052 20 C 0.048 3.952 21 H 0.110 0.890 22 N -0.358 5.358 23 C -0.366 4.366 24 H 0.100 0.900 25 C -0.266 4.266 26 N -0.620 5.620 27 Si 0.794 3.206 28 H -0.212 1.212 29 H -0.230 1.230 30 H -0.195 1.195 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.198 0.802 37 H 0.295 0.705 38 H 0.190 0.810 39 H 0.188 0.812 40 H 0.171 0.829 41 H 0.136 0.864 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.206 0.794 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.543 2.353 -7.392 19.182 hybrid contribution -1.053 -1.166 -0.260 1.592 sum 16.490 1.187 -7.652 18.218 Atomic orbital electron populations 1.21536 0.93898 1.01128 1.01921 1.22541 0.96675 0.99868 0.92642 0.85816 1.22077 0.86713 0.94052 0.97869 1.48316 1.29191 1.43253 1.11941 1.17617 0.82962 0.78045 0.84705 1.90708 1.73097 1.62591 1.19480 1.21781 0.98421 0.95888 1.04630 1.22752 0.87603 0.99949 0.88973 1.66675 1.18939 1.14161 1.25604 1.19508 0.88415 0.86513 0.85826 1.84579 1.16103 1.78234 1.49456 1.19073 0.96785 0.98173 1.00758 1.21346 1.00918 0.90559 0.96166 1.21412 0.93900 1.01911 0.96403 1.21509 0.96632 0.94015 0.97713 1.21161 1.00479 0.95565 0.98757 1.18980 0.93844 0.92003 0.95431 1.23519 1.01422 1.00797 0.79481 1.21700 0.88219 0.88790 0.96459 0.89033 1.42526 1.50273 1.34013 1.09018 1.19655 1.19374 1.08912 0.88637 0.89997 1.25471 1.00322 0.99989 1.00786 1.69824 1.32304 1.26378 1.33511 0.85270 0.78002 0.76771 0.80538 1.21190 1.23038 1.19521 0.95002 0.91141 0.92155 0.94073 0.89837 0.80202 0.70523 0.81007 0.81188 0.82942 0.86385 0.92925 0.87967 0.79432 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.80 71.98 0.63 -3.22 16 2 C -0.10 -2.74 3.42 -9.61 -0.03 -2.77 16 3 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 4 C 0.11 3.65 6.46 86.73 0.56 4.21 16 5 N -0.60 -20.67 3.33 -815.97 -2.71 -23.39 16 6 C 0.58 22.02 7.26 86.58 0.63 22.65 16 7 O -0.58 -24.84 15.24 -4.18 -0.06 -24.90 16 8 C -0.20 -7.00 5.54 -18.60 -0.10 -7.10 16 9 C 0.15 4.53 9.40 84.85 0.80 5.33 16 10 N -0.53 -15.49 10.25 -307.29 -3.15 -18.64 16 11 C 0.39 9.98 7.79 85.42 0.67 10.65 16 12 O -0.47 -8.47 12.80 -85.35 -1.09 -9.56 16 13 C -0.14 -3.86 5.75 -21.26 -0.12 -3.99 16 14 C -0.07 -1.36 9.58 22.29 0.21 -1.15 16 15 C -0.12 -2.14 9.95 22.06 0.22 -1.92 16 16 C -0.08 -1.88 9.96 22.09 0.22 -1.66 16 17 C -0.14 -4.60 9.26 22.20 0.21 -4.40 16 18 C 0.00 0.08 5.90 -19.97 -0.12 -0.04 16 19 C 0.07 2.34 4.95 86.86 0.43 2.77 16 20 C 0.16 5.52 3.47 46.38 0.16 5.68 16 21 H 0.09 2.94 8.09 -2.39 -0.02 2.92 16 22 N -0.72 -34.12 4.56 -316.37 -1.44 -35.57 16 23 C -0.23 -12.42 9.96 84.04 0.84 -11.58 16 24 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 25 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 26 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 27 Si 0.96 46.14 29.55 68.60 2.03 48.16 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 30 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 31 H 0.03 1.22 6.34 -2.39 -0.02 1.21 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.53 7.82 -2.39 -0.02 1.51 16 35 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.18 4.52 5.91 -2.91 -0.02 4.50 16 37 H 0.43 2.59 9.06 -74.06 -0.67 1.91 16 38 H 0.17 2.04 7.66 -2.91 -0.02 2.02 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.12 4.46 6.13 -2.91 -0.02 4.44 16 42 H 0.05 2.02 7.32 -2.39 -0.02 2.01 16 43 H 0.10 2.42 6.98 -2.39 -0.02 2.41 16 44 H 0.37 19.83 6.32 -92.71 -0.59 19.24 16 45 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -78.00 369.52 -0.69 -78.69 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.20 Total: 34.74 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.66 Total: 9.76 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -7.02 Total: -136.89 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.16 Total: -34.46 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.00 -0.69 -78.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939256892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.601 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds