Wall clock time and date at job start Wed Apr 1 2020 00:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.88827 * 2 1 4 4 C 1.54906 * 111.03581 * 123.90399 * 2 1 3 5 5 N 1.47740 * 104.84531 * 155.18322 * 4 2 1 6 6 C 1.34774 * 125.82521 * 155.82977 * 5 4 2 7 7 O 1.21640 * 120.00240 * 354.66569 * 6 5 4 8 8 C 1.47153 * 119.99899 * 174.66594 * 6 5 4 9 9 C 1.39029 * 121.09904 * 315.38540 * 8 6 5 10 10 N 1.32078 * 121.40903 * 179.76966 * 9 8 6 11 11 C 1.31823 * 123.59659 * 0.50935 * 10 9 8 12 12 O 1.35252 * 119.61439 * 179.74306 * 11 10 9 13 13 C 1.41183 * 120.77791 * 359.76412 * 11 10 9 14 14 C 1.40128 * 122.10854 * 179.97438 * 13 11 10 15 15 C 1.36355 * 119.50687 * 180.02562 * 14 13 11 16 16 C 1.39181 * 121.05567 * 0.04424 * 15 14 13 17 17 C 1.36511 * 120.89540 * 359.97087 * 16 15 14 18 18 C 1.39622 * 119.43601 * 0.02562 * 17 16 15 19 19 C 1.47023 * 108.52726 * 335.74824 * 5 4 2 20 20 C 1.54327 * 107.40201 * 1.17981 * 19 5 4 21 21 H 1.08998 * 110.72430 * 263.75624 * 20 19 5 22 22 N 1.46500 * 110.71923 * 140.47501 * 20 19 5 23 23 C 1.36943 * 119.99665 * 86.46252 * 22 20 19 24 24 H 1.07998 * 119.99987 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99919 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99962 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99998 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46908 * 89.99584 * 27 25 23 29 29 H 1.48493 * 109.46894 * 209.99697 * 27 25 23 30 30 H 1.48501 * 109.46658 * 329.99639 * 27 25 23 31 31 H 1.08994 * 109.47193 * 183.88165 * 1 2 3 32 32 H 1.09002 * 109.46736 * 303.88538 * 1 2 3 33 33 H 1.08998 * 109.47040 * 63.88306 * 1 2 3 34 34 H 1.09009 * 110.36769 * 273.93570 * 4 2 1 35 35 H 1.09004 * 110.36774 * 36.25309 * 4 2 1 36 36 H 1.08003 * 119.29869 * 0.02562 * 9 8 6 37 37 H 0.96703 * 114.00473 * 270.02359 * 12 11 10 38 38 H 1.07996 * 120.24231 * 0.02865 * 14 13 11 39 39 H 1.07999 * 119.47127 * 180.02562 * 15 14 13 40 40 H 1.07996 * 119.55270 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.28375 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.88507 * 241.68755 * 19 5 4 43 43 H 1.08998 * 109.88672 * 120.67425 * 19 5 4 44 44 H 0.96999 * 120.00417 * 266.45948 * 22 20 19 45 45 H 0.96998 * 120.00198 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8065 1.2000 5 7 3.4318 -1.2415 0.7727 6 6 4.4551 -1.5583 1.5906 7 8 4.3434 -1.4050 2.7921 8 6 5.7076 -2.0896 1.0300 9 6 5.6944 -3.0734 0.0477 10 7 6.8148 -3.5514 -0.4629 11 6 8.0147 -3.1545 -0.0883 12 8 9.1096 -3.7031 -0.6624 13 6 8.1705 -2.1639 0.9055 14 6 9.4322 -1.7217 1.3251 15 6 9.5210 -0.7621 2.2897 16 6 8.3781 -0.2148 2.8654 17 6 7.1342 -0.6238 2.4793 18 6 7.0096 -1.6048 1.4937 19 6 3.4679 -1.2732 -0.6967 20 6 2.0861 -0.8076 -1.2025 21 1 1.4471 -1.6631 -1.4210 22 7 2.2279 0.0501 -2.3817 23 6 2.3023 -0.5087 -3.6297 24 1 2.2570 -1.5815 -3.7446 25 6 2.4372 0.3040 -4.7470 26 7 2.4929 1.6115 -4.6069 27 14 2.5395 -0.4582 -6.4494 28 1 1.1731 -0.5884 -7.0163 29 1 3.3608 0.4092 -7.3315 30 1 3.1658 -1.8013 -6.3535 31 1 -0.3633 -1.0252 0.0696 32 1 -0.3633 0.5730 0.8532 33 1 -0.3633 0.4524 -0.9227 34 1 2.1568 -0.1719 2.0835 35 1 1.4531 -1.6705 1.4023 36 1 4.7476 -3.4521 -0.3083 37 1 9.4406 -4.4892 -0.2068 38 1 10.3276 -2.1379 0.8877 39 1 10.4938 -0.4215 2.6124 40 1 8.4767 0.5437 3.6278 41 1 6.2540 -0.1921 2.9324 42 1 3.6658 -2.2883 -1.0409 43 1 4.2428 -0.5999 -1.0632 44 1 2.2689 1.0137 -2.2785 45 1 2.5867 2.1794 -5.3877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939256894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:57 Heat of formation + Delta-G solvation = 3.372563 kcal Electronic energy + Delta-G solvation = -29504.701986 eV Core-core repulsion = 25487.935886 eV Total energy + Delta-G solvation = -4016.766099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.20968 -39.73451 -38.20191 -37.57019 -36.83136 -34.12137 -32.76820 -32.11267 -31.38915 -30.76691 -29.69584 -27.60383 -26.40082 -24.68795 -24.02450 -23.76512 -22.75309 -21.52411 -20.01694 -19.76120 -19.08765 -18.02091 -17.68582 -17.15137 -16.99673 -15.96149 -15.86848 -15.60855 -15.10654 -14.70415 -14.59158 -14.18113 -14.06829 -13.87110 -13.59685 -13.41116 -13.15957 -12.91256 -12.68553 -12.42141 -12.25631 -12.21955 -12.12530 -11.98358 -11.59655 -11.53332 -11.16614 -11.03504 -10.78425 -10.64816 -10.28778 -10.21447 -10.05998 -9.98912 -9.76225 -9.45941 -9.34366 -9.02782 -8.46714 -8.15957 -7.12327 -5.86940 -3.18118 -0.09843 0.67275 1.47233 2.56888 2.86970 3.10398 3.26890 3.39299 3.45639 3.46620 3.80180 4.29377 4.32083 4.46278 4.51646 4.62667 4.72233 4.82953 4.97530 5.03087 5.09150 5.16683 5.19955 5.38287 5.46155 5.52097 5.58579 5.67808 5.73691 5.76871 5.84078 5.86942 5.94402 6.10287 6.14606 6.17345 6.21695 6.22232 6.31144 6.43998 6.47881 6.56652 6.57645 6.82548 7.17133 7.60427 7.64548 7.70071 8.17127 8.30274 9.42598 9.95270 10.29958 11.34875 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.003656 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.776377 B = 7657.326656 C = 9337.465680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.605 5.605 6 C 0.582 3.418 7 O -0.544 6.544 8 C -0.173 4.173 9 C 0.148 3.852 10 N -0.509 5.509 11 C 0.375 3.625 12 O -0.474 6.474 13 C -0.127 4.127 14 C -0.079 4.079 15 C -0.123 4.123 16 C -0.091 4.091 17 C -0.104 4.104 18 C 0.023 3.977 19 C 0.066 3.934 20 C 0.178 3.822 21 H 0.068 0.932 22 N -0.710 5.710 23 C -0.250 4.250 24 H 0.073 0.927 25 C -0.006 4.006 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.280 1.280 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.168 0.832 37 H 0.405 0.595 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 -7.232 15.612 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.337 5.337 6 C 0.370 3.630 7 O -0.423 6.423 8 C -0.178 4.178 9 C 0.003 3.997 10 N -0.227 5.227 11 C 0.183 3.817 12 O -0.282 6.282 13 C -0.130 4.130 14 C -0.098 4.098 15 C -0.141 4.141 16 C -0.110 4.110 17 C -0.122 4.122 18 C 0.018 3.982 19 C -0.060 4.060 20 C 0.066 3.934 21 H 0.086 0.914 22 N -0.350 5.350 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.203 4.203 26 N -0.576 5.576 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.205 1.205 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.185 0.815 37 H 0.264 0.736 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.855 -7.434 15.054 19.469 hybrid contribution 0.394 0.150 -0.277 0.505 sum 10.250 -7.284 14.778 19.403 Atomic orbital electron populations 1.21609 0.93692 1.01610 1.02186 1.22632 0.96416 0.99844 0.94473 0.89749 1.22378 0.82047 0.98356 0.98001 1.48527 1.11843 1.65067 1.08264 1.17334 0.82057 0.78002 0.85578 1.90766 1.82261 1.54986 1.14327 1.21809 0.93071 1.01685 1.01201 1.22587 0.95551 0.91860 0.89686 1.66609 0.98126 1.30268 1.27744 1.19372 0.85660 0.89910 0.86782 1.84642 1.40198 1.47614 1.55718 1.18850 0.94557 1.00853 0.98756 1.20910 0.95952 0.96693 0.96267 1.20962 0.98999 0.97103 0.97011 1.21111 0.92133 0.98806 0.98954 1.21126 0.98989 0.96116 0.95989 1.18717 0.90154 0.94702 0.94636 1.23583 1.03816 1.01468 0.77111 1.21244 0.91294 0.93934 0.86945 0.91383 1.42356 1.86846 1.05283 1.00524 1.19236 1.43345 0.91958 0.83529 0.90916 1.24754 1.02171 0.95335 0.98013 1.69656 1.56365 1.02322 1.29253 0.86208 0.77531 0.78211 0.84358 1.21565 1.21716 1.20549 0.92772 0.93118 0.91250 0.90654 0.91227 0.81510 0.73596 0.84444 0.85276 0.85168 0.83890 0.92023 0.90684 0.77836 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.31 37.16 0.35 -1.44 16 2 C -0.11 -1.72 3.25 -88.47 -0.29 -2.01 16 3 H 0.08 1.37 8.00 -51.93 -0.42 0.96 16 4 C 0.11 1.62 6.42 -2.36 -0.02 1.61 16 5 N -0.60 -9.54 3.34 -171.62 -0.57 -10.12 16 6 C 0.58 9.57 7.06 -12.64 -0.09 9.48 16 7 O -0.54 -9.87 15.59 5.24 0.08 -9.79 16 8 C -0.17 -2.66 5.55 -102.67 -0.57 -3.23 16 9 C 0.15 2.19 9.63 -17.15 -0.17 2.03 16 10 N -0.51 -7.65 10.25 -12.66 -0.13 -7.78 16 11 C 0.38 4.94 7.79 -16.44 -0.13 4.82 16 12 O -0.47 -4.88 12.80 -17.45 -0.22 -5.10 16 13 C -0.13 -1.62 5.75 -106.77 -0.61 -2.24 16 14 C -0.08 -0.78 9.58 -39.55 -0.38 -1.16 16 15 C -0.12 -1.10 9.95 -39.91 -0.40 -1.50 16 16 C -0.09 -0.92 9.96 -39.85 -0.40 -1.32 16 17 C -0.10 -1.37 9.29 -39.69 -0.37 -1.74 16 18 C 0.02 0.33 5.90 -104.77 -0.62 -0.28 16 19 C 0.07 1.13 5.66 -3.06 -0.02 1.11 16 20 C 0.18 3.23 3.06 -66.09 -0.20 3.02 16 21 H 0.07 1.22 8.02 -51.93 -0.42 0.81 16 22 N -0.71 -16.48 5.18 -51.65 -0.27 -16.75 16 23 C -0.25 -6.53 9.98 -15.06 -0.15 -6.68 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 26 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 27 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.06 8.00 -51.92 -0.42 0.64 16 35 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 36 H 0.17 2.27 6.15 -52.48 -0.32 1.95 16 37 H 0.40 1.87 9.06 45.56 0.41 2.29 16 38 H 0.14 1.01 7.66 -52.49 -0.40 0.61 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.14 2.00 6.39 -52.49 -0.34 1.67 16 42 H 0.06 0.99 5.77 -51.93 -0.30 0.69 16 43 H 0.07 1.47 8.03 -51.93 -0.42 1.06 16 44 H 0.39 9.68 7.71 -40.82 -0.31 9.37 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -32.89 374.11 -8.92 -41.81 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.00 Total: 11.44 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -4.15 Total: 0.20 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.25 Total: -60.98 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.14 Total: -14.89 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.89 -8.92 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939256894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.178 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds