Wall clock time and date at job start Wed Apr 1 2020 00:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.88827 * 2 1 4 4 C 1.54906 * 111.03581 * 123.90399 * 2 1 3 5 5 N 1.47740 * 104.84531 * 155.18322 * 4 2 1 6 6 C 1.34774 * 125.82521 * 155.82977 * 5 4 2 7 7 O 1.21640 * 120.00240 * 354.66569 * 6 5 4 8 8 C 1.47153 * 119.99899 * 174.66594 * 6 5 4 9 9 C 1.39029 * 121.09904 * 315.38540 * 8 6 5 10 10 N 1.32078 * 121.40903 * 179.76966 * 9 8 6 11 11 C 1.31823 * 123.59659 * 0.50935 * 10 9 8 12 12 O 1.35252 * 119.61439 * 179.74306 * 11 10 9 13 13 C 1.41183 * 120.77791 * 359.76412 * 11 10 9 14 14 C 1.40128 * 122.10854 * 179.97438 * 13 11 10 15 15 C 1.36355 * 119.50687 * 180.02562 * 14 13 11 16 16 C 1.39181 * 121.05567 * 0.04424 * 15 14 13 17 17 C 1.36511 * 120.89540 * 359.97087 * 16 15 14 18 18 C 1.39622 * 119.43601 * 0.02562 * 17 16 15 19 19 C 1.47023 * 108.52726 * 335.74824 * 5 4 2 20 20 C 1.54327 * 107.40201 * 1.17981 * 19 5 4 21 21 H 1.08998 * 110.72430 * 263.75624 * 20 19 5 22 22 N 1.46500 * 110.71923 * 140.47501 * 20 19 5 23 23 C 1.36943 * 119.99665 * 86.46252 * 22 20 19 24 24 H 1.07998 * 119.99987 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99919 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99962 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99998 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46908 * 89.99584 * 27 25 23 29 29 H 1.48493 * 109.46894 * 209.99697 * 27 25 23 30 30 H 1.48501 * 109.46658 * 329.99639 * 27 25 23 31 31 H 1.08994 * 109.47193 * 183.88165 * 1 2 3 32 32 H 1.09002 * 109.46736 * 303.88538 * 1 2 3 33 33 H 1.08998 * 109.47040 * 63.88306 * 1 2 3 34 34 H 1.09009 * 110.36769 * 273.93570 * 4 2 1 35 35 H 1.09004 * 110.36774 * 36.25309 * 4 2 1 36 36 H 1.08003 * 119.29869 * 0.02562 * 9 8 6 37 37 H 0.96703 * 114.00473 * 270.02359 * 12 11 10 38 38 H 1.07996 * 120.24231 * 0.02865 * 14 13 11 39 39 H 1.07999 * 119.47127 * 180.02562 * 15 14 13 40 40 H 1.07996 * 119.55270 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.28375 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.88507 * 241.68755 * 19 5 4 43 43 H 1.08998 * 109.88672 * 120.67425 * 19 5 4 44 44 H 0.96999 * 120.00417 * 266.45948 * 22 20 19 45 45 H 0.96998 * 120.00198 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8065 1.2000 5 7 3.4318 -1.2415 0.7727 6 6 4.4551 -1.5583 1.5906 7 8 4.3434 -1.4050 2.7921 8 6 5.7076 -2.0896 1.0300 9 6 5.6944 -3.0734 0.0477 10 7 6.8148 -3.5514 -0.4629 11 6 8.0147 -3.1545 -0.0883 12 8 9.1096 -3.7031 -0.6624 13 6 8.1705 -2.1639 0.9055 14 6 9.4322 -1.7217 1.3251 15 6 9.5210 -0.7621 2.2897 16 6 8.3781 -0.2148 2.8654 17 6 7.1342 -0.6238 2.4793 18 6 7.0096 -1.6048 1.4937 19 6 3.4679 -1.2732 -0.6967 20 6 2.0861 -0.8076 -1.2025 21 1 1.4471 -1.6631 -1.4210 22 7 2.2279 0.0501 -2.3817 23 6 2.3023 -0.5087 -3.6297 24 1 2.2570 -1.5815 -3.7446 25 6 2.4372 0.3040 -4.7470 26 7 2.4929 1.6115 -4.6069 27 14 2.5395 -0.4582 -6.4494 28 1 1.1731 -0.5884 -7.0163 29 1 3.3608 0.4092 -7.3315 30 1 3.1658 -1.8013 -6.3535 31 1 -0.3633 -1.0252 0.0696 32 1 -0.3633 0.5730 0.8532 33 1 -0.3633 0.4524 -0.9227 34 1 2.1568 -0.1719 2.0835 35 1 1.4531 -1.6705 1.4023 36 1 4.7476 -3.4521 -0.3083 37 1 9.4406 -4.4892 -0.2068 38 1 10.3276 -2.1379 0.8877 39 1 10.4938 -0.4215 2.6124 40 1 8.4767 0.5437 3.6278 41 1 6.2540 -0.1921 2.9324 42 1 3.6658 -2.2883 -1.0409 43 1 4.2428 -0.5999 -1.0632 44 1 2.2689 1.0137 -2.2785 45 1 2.5867 2.1794 -5.3877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939256894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:56 Heat of formation + Delta-G solvation = -21.050022 kcal Electronic energy + Delta-G solvation = -29505.761028 eV Core-core repulsion = 25487.935886 eV Total energy + Delta-G solvation = -4017.825142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.21909 -40.97140 -39.19186 -38.79632 -37.80628 -35.88578 -34.12025 -33.15410 -32.49792 -32.29287 -30.68749 -29.20566 -27.54372 -26.07801 -25.43307 -24.79004 -23.79051 -22.87421 -21.41685 -20.88125 -20.09461 -19.10588 -18.98260 -18.69689 -18.11997 -17.19630 -17.05687 -16.73289 -16.35509 -16.01541 -15.69430 -15.48450 -15.36666 -15.06663 -14.92070 -14.69894 -14.43386 -14.14031 -14.06696 -13.60600 -13.44611 -13.19836 -13.04290 -13.01526 -12.95446 -12.85555 -12.83354 -12.39126 -12.26565 -12.15345 -12.03486 -11.69941 -11.45180 -11.32500 -11.07709 -10.93942 -10.55141 -10.23791 -9.77279 -9.15593 -9.06322 -7.95570 -5.25281 -1.06948 -0.26109 0.54787 1.42016 1.48624 1.49619 1.57448 1.75339 1.98550 2.36555 2.55644 2.84251 3.17111 3.31689 3.36076 3.50919 3.60643 3.76180 3.78582 3.83331 3.87401 4.06715 4.20243 4.21094 4.28646 4.33678 4.44229 4.45483 4.55723 4.60409 4.66965 4.83706 4.87322 4.91227 4.97586 5.07402 5.11603 5.16574 5.25210 5.32574 5.33829 5.38997 5.48811 5.54702 5.77455 6.24814 6.32210 6.46472 6.70018 6.90178 7.33135 8.04195 8.27790 9.27389 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.003656 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.776377 B = 7657.326656 C = 9337.465680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.069 0.931 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.585 3.415 7 O -0.565 6.565 8 C -0.201 4.201 9 C 0.146 3.854 10 N -0.540 5.540 11 C 0.387 3.613 12 O -0.474 6.474 13 C -0.143 4.143 14 C -0.071 4.071 15 C -0.117 4.117 16 C -0.075 4.075 17 C -0.138 4.138 18 C 0.004 3.996 19 C 0.083 3.917 20 C 0.172 3.828 21 H 0.077 0.923 22 N -0.721 5.721 23 C -0.241 4.241 24 H 0.081 0.919 25 C -0.068 4.068 26 N -0.967 5.967 27 Si 0.966 3.034 28 H -0.285 1.285 29 H -0.300 1.300 30 H -0.270 1.270 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.170 0.830 37 H 0.430 0.570 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.124 0.876 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.375 0.625 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.869 -8.364 16.731 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 H 0.087 0.913 4 C -0.004 4.004 5 N -0.337 5.337 6 C 0.374 3.626 7 O -0.446 6.446 8 C -0.207 4.207 9 C 0.002 3.998 10 N -0.260 5.260 11 C 0.195 3.805 12 O -0.286 6.286 13 C -0.147 4.147 14 C -0.091 4.091 15 C -0.135 4.135 16 C -0.093 4.093 17 C -0.156 4.156 18 C -0.001 4.001 19 C -0.043 4.043 20 C 0.062 3.938 21 H 0.095 0.905 22 N -0.360 5.360 23 C -0.373 4.373 24 H 0.099 0.901 25 C -0.261 4.261 26 N -0.617 5.617 27 Si 0.795 3.205 28 H -0.212 1.212 29 H -0.227 1.227 30 H -0.195 1.195 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.187 0.813 37 H 0.294 0.706 38 H 0.186 0.814 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.142 0.858 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.207 0.793 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.666 -8.632 16.218 21.764 hybrid contribution 0.007 0.474 -0.497 0.687 sum 11.673 -8.159 15.721 21.213 Atomic orbital electron populations 1.21564 0.91905 1.02907 1.02062 1.22535 0.97783 0.98671 0.93342 0.91264 1.22476 0.81463 0.99089 0.97415 1.48511 1.12529 1.65122 1.07498 1.17503 0.82332 0.77455 0.85261 1.90736 1.82638 1.56102 1.15115 1.21786 0.93223 1.03064 1.02581 1.22598 0.95929 0.91744 0.89514 1.66637 0.98789 1.31539 1.29003 1.19568 0.85781 0.89353 0.85827 1.84583 1.38958 1.49011 1.56023 1.19060 0.95343 1.01189 0.99092 1.21328 0.95602 0.96273 0.95878 1.21430 1.00216 0.95977 0.95858 1.21528 0.91307 0.98143 0.98371 1.21098 0.99869 0.97377 0.97231 1.18949 0.90336 0.95423 0.95381 1.23159 1.01940 1.01145 0.78017 1.21455 0.91950 0.94005 0.86421 0.90545 1.42473 1.87018 1.05195 1.01295 1.19623 1.40705 0.92310 0.84641 0.90138 1.25476 1.03457 0.95758 1.01361 1.69803 1.58829 1.03529 1.29550 0.85258 0.77320 0.77547 0.80376 1.21218 1.22673 1.19499 0.91112 0.90809 0.93425 0.90220 0.89014 0.81280 0.70582 0.81402 0.81211 0.82356 0.85782 0.91054 0.93679 0.79264 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.31 71.98 0.67 -2.56 16 2 C -0.10 -3.11 3.25 -9.40 -0.03 -3.14 16 3 H 0.07 2.31 8.00 -2.39 -0.02 2.29 16 4 C 0.12 3.23 6.42 86.79 0.56 3.79 16 5 N -0.60 -19.35 3.34 -815.14 -2.72 -22.07 16 6 C 0.59 19.82 7.06 86.58 0.61 20.43 16 7 O -0.57 -21.03 15.59 -4.16 -0.06 -21.10 16 8 C -0.20 -6.44 5.55 -18.60 -0.10 -6.54 16 9 C 0.15 4.47 9.63 84.85 0.82 5.29 16 10 N -0.54 -16.27 10.25 -307.29 -3.15 -19.42 16 11 C 0.39 9.81 7.79 85.42 0.67 10.48 16 12 O -0.47 -8.68 12.80 -85.36 -1.09 -9.78 16 13 C -0.14 -3.51 5.75 -21.26 -0.12 -3.63 16 14 C -0.07 -1.19 9.58 22.29 0.21 -0.97 16 15 C -0.12 -1.65 9.95 22.06 0.22 -1.43 16 16 C -0.07 -1.34 9.96 22.09 0.22 -1.12 16 17 C -0.14 -3.62 9.29 22.20 0.21 -3.42 16 18 C 0.00 0.12 5.90 -19.96 -0.12 0.00 16 19 C 0.08 2.91 5.66 86.73 0.49 3.40 16 20 C 0.17 6.26 3.06 46.18 0.14 6.40 16 21 H 0.08 2.68 8.02 -2.39 -0.02 2.66 16 22 N -0.72 -34.21 5.18 -317.32 -1.64 -35.85 16 23 C -0.24 -12.72 9.98 84.03 0.84 -11.88 16 24 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 25 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 26 N -0.97 -57.91 13.06 21.65 0.28 -57.62 16 27 Si 0.97 45.33 29.55 68.60 2.03 47.35 16 28 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 29 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 30 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 31 H 0.07 1.57 8.07 -2.39 -0.02 1.55 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 2.17 8.00 -2.38 -0.02 2.15 16 35 H 0.09 2.17 7.99 -2.39 -0.02 2.15 16 36 H 0.17 4.77 6.15 -2.91 -0.02 4.75 16 37 H 0.43 2.80 9.06 -74.06 -0.67 2.12 16 38 H 0.17 1.71 7.66 -2.91 -0.02 1.69 16 39 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 40 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 41 H 0.12 3.65 6.39 -2.91 -0.02 3.64 16 42 H 0.07 2.34 5.77 -2.39 -0.01 2.33 16 43 H 0.04 1.85 8.03 -2.39 -0.02 1.83 16 44 H 0.37 19.46 7.71 -92.71 -0.72 18.75 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -73.53 374.11 -0.95 -74.48 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.33 Total: 32.23 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.74 Total: 11.77 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -7.23 Total: -134.96 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.16 Total: -30.87 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.53 -0.95 -74.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939256894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.428 kcal (2) G-P(sol) polarization free energy of solvation -73.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds