Wall clock time and date at job start Wed Apr 1 2020 00:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.87324 * 2 1 4 4 C 1.54328 * 109.88281 * 121.01520 * 2 1 3 5 5 H 1.08991 * 110.71932 * 23.25058 * 4 2 1 6 6 N 1.46498 * 110.71799 * 259.97506 * 4 2 1 7 7 C 1.36936 * 119.99784 * 160.02699 * 6 4 2 8 8 H 1.08001 * 120.00025 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99766 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00293 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99628 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46833 * 90.00248 * 11 9 7 13 13 H 1.48498 * 109.46989 * 209.99901 * 11 9 7 14 14 H 1.48495 * 109.47293 * 330.00145 * 11 9 7 15 15 C 1.55163 * 102.94138 * 141.60956 * 4 2 1 16 16 C 1.54906 * 101.61684 * 324.48281 * 15 4 2 17 17 N 1.47022 * 109.88522 * 238.82409 * 2 1 3 18 18 C 1.34778 * 125.64851 * 61.67172 * 17 2 1 19 19 O 1.21728 * 119.99604 * 0.02562 * 18 17 2 20 20 C 1.46404 * 120.00050 * 179.97438 * 18 17 2 21 21 O 1.35373 * 126.81778 * 6.58469 * 20 18 17 22 22 C 1.33662 * 107.95339 * 179.97438 * 21 20 18 23 23 N 1.30359 * 109.72683 * 359.97438 * 22 21 20 24 24 C 1.34550 * 109.01452 * 359.73090 * 23 22 21 25 25 C 1.48137 * 126.52749 * 180.27255 * 24 23 22 26 26 C 1.39483 * 120.12807 * 224.38639 * 25 24 23 27 27 C 1.37975 * 119.86046 * 179.72300 * 26 25 24 28 28 C 1.38352 * 120.13348 * 0.55084 * 27 26 25 29 29 C 1.38341 * 120.27190 * 359.72433 * 28 27 26 30 30 C 1.37991 * 120.13525 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47495 * 298.98414 * 1 2 3 32 32 H 1.09001 * 109.47157 * 58.98507 * 1 2 3 33 33 H 1.08997 * 109.47087 * 178.98200 * 1 2 3 34 34 H 0.97000 * 120.00635 * 340.01928 * 6 4 2 35 35 H 0.96997 * 119.99703 * 179.97438 * 10 9 7 36 36 H 1.09004 * 110.99761 * 82.57145 * 15 4 2 37 37 H 1.08995 * 111.00120 * 206.38306 * 15 4 2 38 38 H 1.09001 * 110.36601 * 155.87032 * 16 15 4 39 39 H 1.08999 * 110.36246 * 278.18846 * 16 15 4 40 40 H 1.07996 * 125.13404 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.06895 * 359.97438 * 26 25 24 42 42 H 1.07995 * 119.93734 * 180.27838 * 27 26 25 43 43 H 1.08004 * 119.86362 * 179.74132 * 28 27 26 44 44 H 1.08000 * 119.93865 * 179.97438 * 29 28 27 45 45 H 1.07995 * 120.06971 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 1.3052 -1.4437 1.6202 6 7 2.4554 0.1993 2.2872 7 6 2.5575 -0.2175 3.5876 8 1 2.3423 -1.2444 3.8440 9 6 2.9375 0.6797 4.5762 10 7 3.2003 1.9310 4.2637 11 14 3.0761 0.1112 6.3503 12 1 4.4556 -0.3743 6.6081 13 1 2.7729 1.2461 7.2588 14 1 2.1101 -0.9899 6.5941 15 6 3.2876 -1.5133 0.6945 16 6 2.8152 -1.8813 -0.7341 17 7 2.0300 -0.7157 -1.1829 18 6 1.8085 -0.3648 -2.4652 19 8 1.1433 0.6224 -2.7197 20 6 2.3688 -1.1702 -3.5518 21 8 3.0187 -2.3518 -3.4339 22 6 3.3669 -2.7547 -4.6599 23 7 2.9654 -1.8814 -5.5406 24 6 2.3327 -0.8778 -4.9059 25 6 1.7183 0.3145 -5.5346 26 6 1.9193 1.5793 -4.9820 27 6 1.3491 2.6868 -5.5754 28 6 0.5700 2.5432 -6.7096 29 6 0.3622 1.2907 -7.2590 30 6 0.9322 0.1763 -6.6783 31 1 -0.3634 0.4979 0.8989 32 1 -0.3633 0.5295 -0.8807 33 1 -0.3633 -1.0275 -0.0183 34 1 2.6484 1.1216 2.0570 35 1 3.4655 2.5580 4.9546 36 1 4.1654 -0.8678 0.6616 37 1 3.4856 -2.4089 1.2834 38 1 3.6726 -2.0370 -1.3889 39 1 2.1893 -2.7733 -0.7087 40 1 3.9003 -3.6659 -4.8865 41 1 2.5234 1.6920 -4.0939 42 1 1.5077 3.6672 -5.1512 43 1 0.1223 3.4126 -7.1681 44 1 -0.2473 1.1848 -8.1443 45 1 0.7690 -0.8010 -7.1078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986340832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:31 Heat of formation + Delta-G solvation = 39.347934 kcal Electronic energy + Delta-G solvation = -29435.499533 eV Core-core repulsion = 25420.293443 eV Total energy + Delta-G solvation = -4015.206090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.55452 -39.97805 -39.07977 -37.52656 -35.34115 -34.16883 -32.21946 -31.63624 -31.01634 -30.93851 -29.76933 -28.75582 -25.28959 -24.77101 -23.61335 -23.15379 -22.78532 -22.00972 -21.24485 -20.27809 -19.54551 -17.89845 -17.37648 -17.14611 -16.97293 -16.44335 -16.08537 -15.33449 -15.10849 -15.01446 -14.70659 -14.34132 -14.00421 -13.69656 -13.52265 -13.43773 -13.37680 -13.01139 -12.87696 -12.78645 -12.26078 -11.96908 -11.75135 -11.66683 -11.44718 -11.23849 -11.18574 -11.11490 -10.95173 -10.87819 -10.64097 -10.33473 -10.22470 -10.00711 -9.77736 -9.55796 -9.00069 -8.93916 -8.62714 -8.42290 -7.09097 -5.86316 -3.17186 0.42215 1.26263 1.40587 2.22181 2.27106 2.99565 3.04757 3.37888 3.43448 3.45176 3.64623 3.79757 4.36305 4.49923 4.51022 4.87650 4.91428 4.94640 5.03976 5.07231 5.19706 5.25374 5.30307 5.40482 5.42835 5.52969 5.56730 5.59245 5.68699 5.72978 5.86742 5.93126 5.98307 5.99974 6.06978 6.23058 6.36400 6.38376 6.44561 6.47932 6.50392 6.53412 6.59170 6.84644 6.89219 7.24523 7.50406 7.61313 8.02293 8.30733 9.42488 9.95808 10.30612 11.35759 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.002691 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.764298 B =10400.773610 C =11466.479957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.083 0.917 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.595 5.595 18 C 0.612 3.388 19 O -0.507 6.507 20 C -0.085 4.085 21 O -0.182 6.182 22 C 0.194 3.806 23 N -0.483 5.483 24 C 0.110 3.890 25 C -0.027 4.027 26 C -0.052 4.052 27 C -0.125 4.125 28 C -0.107 4.107 29 C -0.133 4.133 30 C -0.085 4.085 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.256 0.744 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 -7.340 -21.559 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 H 0.101 0.899 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.328 5.328 18 C 0.399 3.601 19 O -0.385 6.385 20 C -0.141 4.141 21 O -0.067 6.067 22 C -0.032 4.032 23 N -0.210 5.210 24 C -0.013 4.013 25 C -0.028 4.028 26 C -0.071 4.071 27 C -0.143 4.143 28 C -0.125 4.125 29 C -0.151 4.151 30 C -0.103 4.103 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.271 0.729 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.301 -6.964 -22.126 23.310 hybrid contribution 0.333 -0.322 1.583 1.650 sum -1.968 -7.285 -20.543 21.885 Atomic orbital electron populations 1.22061 0.94491 1.01802 1.02994 1.21997 0.94669 0.96942 0.83821 0.89935 1.21244 0.93551 0.91619 0.87042 0.91566 1.42338 1.80928 1.09077 1.03124 1.19185 1.39454 0.95185 0.83751 0.90968 1.24769 1.01977 0.95623 0.98192 1.69659 1.52338 1.02985 1.32672 0.86181 0.77762 0.77396 0.84752 1.21643 1.21714 1.20673 1.23593 1.01457 1.01892 0.92700 1.22535 0.94837 0.87920 0.97279 1.48499 1.51112 1.28631 1.04514 1.15866 0.80777 0.83543 0.79908 1.90925 1.39670 1.25732 1.82140 1.23528 1.05619 0.88375 0.96596 1.84626 1.55942 1.31983 1.34159 1.28244 0.98343 1.00190 0.76409 1.70486 1.13983 1.02709 1.33867 1.20534 0.97983 0.94796 0.88030 1.17604 0.99441 0.89521 0.96205 1.21154 0.97536 0.90930 0.97449 1.21048 0.98317 0.98696 0.96200 1.21250 0.97869 0.97368 0.96028 1.20996 1.01032 0.92477 1.00566 1.21092 0.96008 0.99001 0.94209 0.90802 0.91814 0.93003 0.77939 0.93320 0.90532 0.90328 0.90798 0.91377 0.72852 0.85706 0.85653 0.86030 0.85893 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.10 37.15 0.34 -2.16 16 2 C 0.13 2.20 3.21 -66.95 -0.21 1.98 16 3 H 0.08 1.56 7.68 -51.93 -0.40 1.16 16 4 C 0.18 3.28 3.12 -66.09 -0.21 3.07 16 5 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 6 N -0.71 -16.83 5.25 -51.65 -0.27 -17.10 16 7 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 11 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C -0.16 -2.47 6.77 -24.58 -0.17 -2.64 16 16 C 0.10 1.30 6.11 -2.48 -0.02 1.29 16 17 N -0.60 -9.18 3.07 -164.56 -0.50 -9.68 16 18 C 0.61 9.70 7.36 -12.97 -0.10 9.60 16 19 O -0.51 -8.91 12.29 5.16 0.06 -8.85 16 20 C -0.09 -1.19 6.96 -36.17 -0.25 -1.44 16 21 O -0.18 -2.04 8.18 4.34 0.04 -2.01 16 22 C 0.19 1.70 13.16 52.14 0.69 2.39 16 23 N -0.48 -5.81 11.28 -11.02 -0.12 -5.93 16 24 C 0.11 1.51 6.64 -82.49 -0.55 0.97 16 25 C -0.03 -0.37 5.44 -104.91 -0.57 -0.94 16 26 C -0.05 -0.71 7.58 -39.21 -0.30 -1.01 16 27 C -0.12 -1.47 10.03 -39.64 -0.40 -1.87 16 28 C -0.11 -1.10 10.04 -39.50 -0.40 -1.50 16 29 C -0.13 -1.37 10.03 -39.63 -0.40 -1.77 16 30 C -0.08 -1.01 9.79 -39.22 -0.38 -1.40 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 9.83 7.51 -40.82 -0.31 9.53 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.91 6.43 -51.93 -0.33 0.57 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.26 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 1.83 6.86 -52.49 -0.36 1.47 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -31.80 375.15 -8.55 -40.35 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.94 Total: 9.77 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -3.16 Total: -2.34 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.18 Total: -59.14 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.10 Total: -10.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.80 -8.55 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986340832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.697 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds