Wall clock time and date at job start Wed Apr 1 2020 00:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.87324 * 2 1 4 4 C 1.54328 * 109.88281 * 121.01520 * 2 1 3 5 5 H 1.08991 * 110.71932 * 23.25058 * 4 2 1 6 6 N 1.46498 * 110.71799 * 259.97506 * 4 2 1 7 7 C 1.36936 * 119.99784 * 160.02699 * 6 4 2 8 8 H 1.08001 * 120.00025 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99766 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00293 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99628 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46833 * 90.00248 * 11 9 7 13 13 H 1.48498 * 109.46989 * 209.99901 * 11 9 7 14 14 H 1.48495 * 109.47293 * 330.00145 * 11 9 7 15 15 C 1.55163 * 102.94138 * 141.60956 * 4 2 1 16 16 C 1.54906 * 101.61684 * 324.48281 * 15 4 2 17 17 N 1.47022 * 109.88522 * 238.82409 * 2 1 3 18 18 C 1.34778 * 125.64851 * 61.67172 * 17 2 1 19 19 O 1.21728 * 119.99604 * 0.02562 * 18 17 2 20 20 C 1.46404 * 120.00050 * 179.97438 * 18 17 2 21 21 O 1.35373 * 126.81778 * 6.58469 * 20 18 17 22 22 C 1.33662 * 107.95339 * 179.97438 * 21 20 18 23 23 N 1.30359 * 109.72683 * 359.97438 * 22 21 20 24 24 C 1.34550 * 109.01452 * 359.73090 * 23 22 21 25 25 C 1.48137 * 126.52749 * 180.27255 * 24 23 22 26 26 C 1.39483 * 120.12807 * 224.38639 * 25 24 23 27 27 C 1.37975 * 119.86046 * 179.72300 * 26 25 24 28 28 C 1.38352 * 120.13348 * 0.55084 * 27 26 25 29 29 C 1.38341 * 120.27190 * 359.72433 * 28 27 26 30 30 C 1.37991 * 120.13525 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47495 * 298.98414 * 1 2 3 32 32 H 1.09001 * 109.47157 * 58.98507 * 1 2 3 33 33 H 1.08997 * 109.47087 * 178.98200 * 1 2 3 34 34 H 0.97000 * 120.00635 * 340.01928 * 6 4 2 35 35 H 0.96997 * 119.99703 * 179.97438 * 10 9 7 36 36 H 1.09004 * 110.99761 * 82.57145 * 15 4 2 37 37 H 1.08995 * 111.00120 * 206.38306 * 15 4 2 38 38 H 1.09001 * 110.36601 * 155.87032 * 16 15 4 39 39 H 1.08999 * 110.36246 * 278.18846 * 16 15 4 40 40 H 1.07996 * 125.13404 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.06895 * 359.97438 * 26 25 24 42 42 H 1.07995 * 119.93734 * 180.27838 * 27 26 25 43 43 H 1.08004 * 119.86362 * 179.74132 * 28 27 26 44 44 H 1.08000 * 119.93865 * 179.97438 * 29 28 27 45 45 H 1.07995 * 120.06971 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 1.3052 -1.4437 1.6202 6 7 2.4554 0.1993 2.2872 7 6 2.5575 -0.2175 3.5876 8 1 2.3423 -1.2444 3.8440 9 6 2.9375 0.6797 4.5762 10 7 3.2003 1.9310 4.2637 11 14 3.0761 0.1112 6.3503 12 1 4.4556 -0.3743 6.6081 13 1 2.7729 1.2461 7.2588 14 1 2.1101 -0.9899 6.5941 15 6 3.2876 -1.5133 0.6945 16 6 2.8152 -1.8813 -0.7341 17 7 2.0300 -0.7157 -1.1829 18 6 1.8085 -0.3648 -2.4652 19 8 1.1433 0.6224 -2.7197 20 6 2.3688 -1.1702 -3.5518 21 8 3.0187 -2.3518 -3.4339 22 6 3.3669 -2.7547 -4.6599 23 7 2.9654 -1.8814 -5.5406 24 6 2.3327 -0.8778 -4.9059 25 6 1.7183 0.3145 -5.5346 26 6 1.9193 1.5793 -4.9820 27 6 1.3491 2.6868 -5.5754 28 6 0.5700 2.5432 -6.7096 29 6 0.3622 1.2907 -7.2590 30 6 0.9322 0.1763 -6.6783 31 1 -0.3634 0.4979 0.8989 32 1 -0.3633 0.5295 -0.8807 33 1 -0.3633 -1.0275 -0.0183 34 1 2.6484 1.1216 2.0570 35 1 3.4655 2.5580 4.9546 36 1 4.1654 -0.8678 0.6616 37 1 3.4856 -2.4089 1.2834 38 1 3.6726 -2.0370 -1.3889 39 1 2.1893 -2.7733 -0.7087 40 1 3.9003 -3.6659 -4.8865 41 1 2.5234 1.6920 -4.0939 42 1 1.5077 3.6672 -5.1512 43 1 0.1223 3.4126 -7.1681 44 1 -0.2473 1.1848 -8.1443 45 1 0.7690 -0.8010 -7.1078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986340832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:30 Heat of formation + Delta-G solvation = 18.071253 kcal Electronic energy + Delta-G solvation = -29436.422159 eV Core-core repulsion = 25420.293443 eV Total energy + Delta-G solvation = -4016.128716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.42990 -41.23678 -39.98547 -38.84366 -36.31066 -35.83842 -33.55937 -32.92137 -32.29396 -31.85345 -31.17626 -29.94422 -26.90286 -25.83523 -24.85708 -24.44230 -23.85113 -22.98750 -22.29969 -21.56452 -20.76293 -19.22377 -18.82727 -18.28678 -17.95223 -17.41968 -17.24203 -16.67487 -16.27647 -16.04707 -15.94176 -15.51281 -15.45146 -15.08078 -14.85509 -14.58308 -14.40855 -14.28646 -14.15754 -13.72682 -13.68653 -13.35431 -13.15893 -12.92408 -12.72168 -12.61782 -12.55309 -12.27159 -12.18293 -12.13040 -12.07090 -11.85184 -11.74004 -11.62278 -11.31463 -10.91979 -10.50008 -9.89801 -9.77643 -9.39910 -9.04115 -7.94075 -5.24291 -0.54773 0.39995 0.50590 1.25956 1.39359 1.50065 1.51024 1.59377 1.87275 1.93302 2.57250 2.82278 2.97129 3.31650 3.42003 3.59548 3.66032 3.75178 3.95638 4.04615 4.05854 4.13356 4.20989 4.27624 4.30955 4.33542 4.37915 4.47048 4.56771 4.62480 4.65371 4.68530 4.86653 4.92611 4.99693 5.10483 5.13619 5.17635 5.18845 5.24599 5.40148 5.51053 5.54735 5.55257 5.58438 6.03285 6.23377 6.26919 6.43664 6.82745 7.32869 8.03715 8.27752 9.29350 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.002691 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.764298 B =10400.773610 C =11466.479957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.136 3.864 3 H 0.054 0.946 4 C 0.173 3.827 5 H 0.073 0.927 6 N -0.728 5.728 7 C -0.236 4.236 8 H 0.084 0.916 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.972 3.028 12 H -0.288 1.288 13 H -0.301 1.301 14 H -0.266 1.266 15 C -0.146 4.146 16 C 0.107 3.893 17 N -0.598 5.598 18 C 0.611 3.389 19 O -0.534 6.534 20 C -0.114 4.114 21 O -0.181 6.181 22 C 0.229 3.771 23 N -0.512 5.512 24 C 0.111 3.889 25 C -0.052 4.052 26 C -0.073 4.073 27 C -0.137 4.137 28 C -0.104 4.104 29 C -0.129 4.129 30 C -0.093 4.093 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.372 0.628 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.313 0.687 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 -10.111 -23.388 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.033 3.967 3 H 0.072 0.928 4 C 0.063 3.937 5 H 0.091 0.909 6 N -0.367 5.367 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.215 1.215 13 H -0.228 1.228 14 H -0.191 1.191 15 C -0.187 4.187 16 C -0.015 4.015 17 N -0.330 5.330 18 C 0.399 3.601 19 O -0.414 6.414 20 C -0.169 4.169 21 O -0.068 6.068 22 C 0.005 3.995 23 N -0.239 5.239 24 C -0.012 4.012 25 C -0.053 4.053 26 C -0.092 4.092 27 C -0.154 4.154 28 C -0.122 4.122 29 C -0.147 4.147 30 C -0.111 4.111 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.328 0.672 41 H 0.121 0.879 42 H 0.154 0.846 43 H 0.171 0.829 44 H 0.173 0.827 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.566 -9.798 -23.994 26.045 hybrid contribution 0.425 0.469 1.958 2.058 sum -2.140 -9.329 -22.036 24.025 Atomic orbital electron populations 1.21948 0.93729 1.02513 1.02090 1.21698 0.95161 0.95566 0.84319 0.92788 1.21416 0.94838 0.91081 0.86374 0.90875 1.42502 1.81298 1.09299 1.03648 1.19599 1.37001 0.95404 0.84734 0.89823 1.25566 1.03148 0.95844 1.02134 1.69826 1.54673 1.04205 1.33392 0.85155 0.77839 0.76830 0.80008 1.21478 1.22754 1.19097 1.23400 0.99171 1.01528 0.94552 1.22587 0.95599 0.87761 0.95546 1.48480 1.51483 1.29066 1.04019 1.16080 0.80387 0.83416 0.80192 1.90899 1.40891 1.26956 1.82642 1.22971 1.08260 0.89876 0.95833 1.84605 1.55957 1.30941 1.35253 1.29601 0.94973 1.00091 0.74869 1.70531 1.15381 1.03262 1.34711 1.20709 0.97303 0.95010 0.88192 1.17854 1.00593 0.89596 0.97246 1.21104 0.98634 0.92083 0.97421 1.21296 0.98546 0.98648 0.96957 1.21623 0.96804 0.98663 0.95117 1.21404 1.00335 0.91831 1.01095 1.21308 0.95902 1.00154 0.93780 0.91764 0.92581 0.91389 0.79609 0.94107 0.92540 0.88852 0.89106 0.88940 0.67206 0.87938 0.84644 0.82946 0.82706 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.10 71.98 0.65 -4.08 16 2 C 0.14 4.78 3.21 45.34 0.15 4.92 16 3 H 0.05 2.19 7.68 -2.38 -0.02 2.18 16 4 C 0.17 6.37 3.12 46.18 0.14 6.51 16 5 H 0.07 2.62 7.83 -2.39 -0.02 2.60 16 6 N -0.73 -35.08 5.25 -317.32 -1.67 -36.74 16 7 C -0.24 -12.38 9.98 84.03 0.84 -11.54 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 10 N -0.97 -58.52 13.06 21.65 0.28 -58.24 16 11 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 12 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 15 C -0.15 -4.49 6.77 31.99 0.22 -4.28 16 16 C 0.11 2.67 6.11 86.83 0.53 3.20 16 17 N -0.60 -18.40 3.07 -792.75 -2.43 -20.83 16 18 C 0.61 19.70 7.36 86.37 0.64 20.34 16 19 O -0.53 -19.75 12.29 -4.44 -0.05 -19.80 16 20 C -0.11 -3.11 6.96 24.48 0.17 -2.94 16 21 O -0.18 -3.61 8.18 -7.38 -0.06 -3.67 16 22 C 0.23 3.21 13.16 130.46 1.72 4.92 16 23 N -0.51 -11.31 11.28 -303.69 -3.43 -14.73 16 24 C 0.11 3.01 6.64 41.44 0.28 3.29 16 25 C -0.05 -1.46 5.44 -20.05 -0.11 -1.56 16 26 C -0.07 -2.12 7.58 22.51 0.17 -1.95 16 27 C -0.14 -3.25 10.03 22.23 0.22 -3.03 16 28 C -0.10 -1.98 10.04 22.32 0.22 -1.75 16 29 C -0.13 -2.40 10.03 22.24 0.22 -2.18 16 30 C -0.09 -2.14 9.79 22.51 0.22 -1.92 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.06 1.91 6.90 -2.39 -0.02 1.90 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.37 19.85 7.51 -92.71 -0.70 19.15 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.09 2.00 6.43 -2.39 -0.02 1.99 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.31 0.04 8.06 -2.91 -0.02 0.02 16 41 H 0.10 3.31 6.86 -2.91 -0.02 3.29 16 42 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -72.42 375.15 1.75 -70.68 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.33 Total: 32.30 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 6.75 Total: 4.25 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -7.24 Total: -130.55 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.11 Total: -23.47 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -72.42 1.75 -70.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986340832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.747 kcal (2) G-P(sol) polarization free energy of solvation -72.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds