Wall clock time and date at job start Wed Apr 1 2020 00:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54327 * 110.00988 * 238.90078 * 2 1 3 5 5 H 1.09003 * 110.72034 * 99.95202 * 4 2 1 6 6 N 1.46500 * 110.71938 * 336.68310 * 4 2 1 7 7 C 1.36936 * 120.00145 * 155.00393 * 6 4 2 8 8 H 1.08007 * 119.99576 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00242 * 179.97438 * 7 6 4 10 10 N 1.31625 * 119.99877 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00109 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.46873 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.46961 * 119.99744 * 11 9 7 14 14 H 1.48501 * 109.46969 * 239.99649 * 11 9 7 15 15 C 1.55153 * 102.94211 * 218.31833 * 4 2 1 16 16 C 1.54908 * 101.58630 * 35.49999 * 15 4 2 17 17 N 1.47022 * 109.88494 * 121.01779 * 2 1 3 18 18 C 1.34780 * 125.64449 * 298.54565 * 17 2 1 19 19 O 1.21698 * 120.00027 * 0.02562 * 18 17 2 20 20 C 1.46667 * 119.99730 * 179.97438 * 18 17 2 21 21 C 1.36720 * 125.85700 * 179.72126 * 20 18 17 22 22 C 1.39915 * 106.91371 * 179.84920 * 21 20 18 23 23 C 1.36517 * 107.02272 * 0.40889 * 22 21 20 24 24 C 1.47729 * 125.76885 * 179.72527 * 23 22 21 25 25 C 1.40037 * 120.93454 * 359.71797 * 24 23 22 26 26 C 1.37946 * 118.98508 * 179.80003 * 25 24 23 27 27 N 1.31927 * 120.91242 * 0.48324 * 26 25 24 28 28 C 1.31930 * 122.07351 * 359.74242 * 27 26 25 29 29 C 1.37940 * 120.90798 * 0.02562 * 28 27 26 30 30 O 1.34389 * 108.46142 * 359.74484 * 23 22 21 31 31 H 1.09000 * 109.46713 * 300.70085 * 1 2 3 32 32 H 1.08998 * 109.47126 * 60.69984 * 1 2 3 33 33 H 1.09002 * 109.46967 * 180.70601 * 1 2 3 34 34 H 0.97002 * 119.99779 * 334.99569 * 6 4 2 35 35 H 0.96998 * 119.99493 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00338 * 277.42810 * 15 4 2 37 37 H 1.09003 * 111.00533 * 153.57766 * 15 4 2 38 38 H 1.08992 * 110.36921 * 204.15530 * 16 15 4 39 39 H 1.09001 * 110.45822 * 81.87204 * 16 15 4 40 40 H 1.08002 * 126.54335 * 359.97420 * 21 20 18 41 41 H 1.08000 * 126.49414 * 180.12919 * 22 21 20 42 42 H 1.08001 * 120.50426 * 0.02562 * 25 24 23 43 43 H 1.08005 * 119.54073 * 180.22923 * 26 25 24 44 44 H 1.07998 * 119.54446 * 179.97438 * 28 27 26 45 45 H 1.08002 * 120.50682 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 2.3556 -0.0452 -2.0190 6 7 1.0531 -1.6874 -1.7473 7 6 1.0691 -2.0643 -3.0636 8 1 1.8225 -1.6694 -3.7292 9 6 0.1172 -2.9538 -3.5426 10 7 -0.8006 -3.4354 -2.7312 11 14 0.1386 -3.4674 -5.3385 12 1 1.2619 -2.7893 -6.0338 13 1 0.3152 -4.9390 -5.4304 14 1 -1.1445 -3.0818 -5.9789 15 6 3.2918 -1.5108 -0.6894 16 6 2.8177 -1.8763 0.7394 17 7 2.0301 -0.7124 1.1849 18 6 1.8051 -0.3602 2.4662 19 8 1.1358 0.6245 2.7180 20 6 2.3659 -1.1644 3.5571 21 6 2.2184 -0.9153 4.8933 22 6 2.9075 -1.9250 5.5740 23 6 3.4548 -2.7431 4.6281 24 6 4.2760 -3.9420 4.8939 25 6 4.5686 -4.3379 6.2048 26 6 5.3357 -5.4665 6.4068 27 7 5.7988 -6.1627 5.3864 28 6 5.5510 -5.8225 4.1361 29 6 4.7887 -4.7112 3.8419 30 8 3.1205 -2.2732 3.4142 31 1 -0.3633 0.5247 0.8836 32 1 -0.3633 0.5029 -0.8962 33 1 -0.3633 -1.0276 0.0127 34 1 0.3763 -2.0418 -1.1495 35 1 -1.4656 -4.0573 -3.0659 36 1 4.1682 -0.8634 -0.6566 37 1 3.4921 -2.4074 -1.2759 38 1 3.6743 -2.0285 1.3959 39 1 2.1942 -2.7701 0.7169 40 1 1.6722 -0.0968 5.3384 41 1 2.9942 -2.0337 6.6450 42 1 4.1962 -3.7704 7.0449 43 1 5.5637 -5.7821 7.4143 44 1 5.9511 -6.4219 3.3317 45 1 4.5901 -4.4384 2.8160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986360926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:14 Heat of formation + Delta-G solvation = 43.879024 kcal Electronic energy + Delta-G solvation = -29239.031050 eV Core-core repulsion = 25224.021442 eV Total energy + Delta-G solvation = -4015.009607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.94075 -40.31271 -39.84169 -37.56974 -34.28767 -33.89650 -33.13225 -31.75184 -31.58977 -30.90396 -29.66144 -28.55387 -25.30517 -24.96847 -24.04713 -23.60552 -22.90133 -21.69102 -21.29229 -20.15236 -19.10847 -18.03894 -17.60079 -17.00744 -16.70725 -16.44978 -16.15064 -16.03838 -15.22813 -14.74921 -14.60773 -14.21248 -14.12073 -14.00395 -13.88880 -13.47947 -13.41125 -13.18344 -13.01010 -12.75858 -12.74873 -12.30048 -11.97134 -11.83130 -11.32163 -11.05089 -10.99874 -10.91354 -10.80016 -10.68938 -10.33556 -10.19915 -10.12417 -9.96599 -9.89362 -9.66817 -9.57481 -9.01262 -8.64258 -8.33131 -7.08244 -5.86190 -3.16236 0.12462 0.75174 1.29852 2.24693 2.26394 3.07333 3.19783 3.37712 3.43845 3.46020 3.49500 3.99981 4.09168 4.36032 4.50622 4.55903 4.59506 4.63559 4.75392 5.00781 5.15860 5.17721 5.22965 5.33185 5.39325 5.42731 5.46581 5.54335 5.57935 5.67870 5.71829 5.74349 5.80861 5.95437 6.06513 6.08543 6.24689 6.27568 6.35926 6.44735 6.54749 6.57506 6.69017 6.80619 6.95807 7.58305 7.60516 7.62758 8.11575 8.31693 9.43598 9.97793 10.32835 11.35931 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011564 B = 0.003003 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.737765 B = 9322.093103 C =11105.264667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.126 3.874 3 H 0.075 0.925 4 C 0.173 3.827 5 H 0.073 0.927 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C -0.159 4.159 16 C 0.103 3.897 17 N -0.594 5.594 18 C 0.608 3.392 19 O -0.523 6.523 20 C -0.042 4.042 21 C -0.130 4.130 22 C -0.183 4.183 23 C 0.034 3.966 24 C 0.029 3.971 25 C -0.153 4.153 26 C 0.103 3.897 27 N -0.484 5.484 28 C 0.106 3.894 29 C -0.153 4.153 30 O -0.146 6.146 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.141 0.859 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.069 0.504 18.119 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.093 0.907 4 C 0.060 3.940 5 H 0.091 0.909 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.019 4.019 17 N -0.326 5.326 18 C 0.396 3.604 19 O -0.402 6.402 20 C -0.095 4.095 21 C -0.150 4.150 22 C -0.203 4.203 23 C -0.018 4.018 24 C 0.021 3.979 25 C -0.173 4.173 26 C -0.053 4.053 27 N -0.193 5.193 28 C -0.050 4.050 29 C -0.173 4.173 30 O -0.041 6.041 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.225 0.775 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.159 0.841 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.289 0.136 17.959 21.762 hybrid contribution -0.840 0.222 -0.773 1.163 sum 11.449 0.358 17.186 20.653 Atomic orbital electron populations 1.21937 0.93877 1.03142 1.01887 1.22136 0.95711 0.95736 0.84167 0.90680 1.21203 0.89094 0.91698 0.91975 0.90890 1.42565 1.32780 1.51164 1.09020 1.19276 1.10980 1.21178 0.86108 0.90922 1.24756 0.97884 1.00002 0.97945 1.69673 1.18539 1.35297 1.34190 0.86123 0.77284 0.78039 0.84728 1.20500 1.21866 1.21851 1.23546 0.99334 1.02533 0.94645 1.22446 0.94646 0.88414 0.96358 1.48572 1.50796 1.28656 1.04602 1.16159 0.80608 0.83474 0.80188 1.90864 1.40173 1.26435 1.82760 1.22383 1.01217 0.89723 0.96166 1.21844 1.01255 1.00710 0.91229 1.21756 1.02028 0.96037 1.00445 1.20528 1.01816 0.96644 0.82831 1.18082 0.94729 0.91007 0.94123 1.22096 1.00392 0.98916 0.95861 1.22701 0.93196 0.90845 0.98561 1.67657 1.20699 1.30975 0.99977 1.22775 0.94187 0.94033 0.93981 1.22402 0.98375 0.96119 1.00422 1.84241 1.53896 1.35636 1.30361 0.92620 0.91131 0.91470 0.77527 0.93433 0.91931 0.89186 0.91069 0.90774 0.81748 0.82291 0.84081 0.82094 0.81993 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.51 37.16 0.32 -2.48 16 2 C 0.13 2.17 3.42 -66.95 -0.23 1.94 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.17 3.17 3.48 -66.10 -0.23 2.94 16 5 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 6 N -0.71 -16.47 4.55 -51.65 -0.24 -16.71 16 7 C -0.24 -6.32 9.96 -15.06 -0.15 -6.47 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.96 13.06 55.49 0.72 -26.23 16 11 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 C -0.16 -2.52 6.77 -24.59 -0.17 -2.68 16 16 C 0.10 1.60 6.14 -2.53 -0.02 1.58 16 17 N -0.59 -9.83 3.07 -164.55 -0.50 -10.33 16 18 C 0.61 10.20 7.61 -12.86 -0.10 10.10 16 19 O -0.52 -9.85 15.89 5.19 0.08 -9.76 16 20 C -0.04 -0.60 6.93 -36.73 -0.25 -0.85 16 21 C -0.13 -1.56 10.59 -39.50 -0.42 -1.98 16 22 C -0.18 -1.83 10.26 -39.58 -0.41 -2.24 16 23 C 0.03 0.38 7.05 -36.33 -0.26 0.12 16 24 C 0.03 0.28 5.91 -104.67 -0.62 -0.33 16 25 C -0.15 -1.18 9.64 -39.01 -0.38 -1.55 16 26 C 0.10 0.81 11.17 -17.62 -0.20 0.61 16 27 N -0.48 -4.77 10.34 -13.36 -0.14 -4.91 16 28 C 0.11 0.97 11.17 -17.62 -0.20 0.77 16 29 C -0.15 -1.48 9.82 -39.02 -0.38 -1.86 16 30 O -0.15 -1.95 7.68 3.85 0.03 -1.92 16 31 H 0.05 1.02 6.87 -51.93 -0.36 0.67 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.40 6.23 -51.93 -0.32 1.07 16 34 H 0.39 9.72 5.69 -40.82 -0.23 9.48 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.07 0.97 6.21 -51.93 -0.32 0.65 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.16 1.05 7.33 -52.49 -0.38 0.66 16 42 H 0.14 0.71 7.11 -52.49 -0.37 0.34 16 43 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.14 1.32 7.99 -52.49 -0.42 0.90 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -31.35 375.96 -8.94 -40.29 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.76 Total: 10.15 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.78 Total: -2.74 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.15 Total: -58.18 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.11 Total: -11.68 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.35 -8.94 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986360926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.166 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds