Wall clock time and date at job start Wed Apr 1 2020 00:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54327 * 110.00988 * 238.90078 * 2 1 3 5 5 H 1.09003 * 110.72034 * 99.95202 * 4 2 1 6 6 N 1.46500 * 110.71938 * 336.68310 * 4 2 1 7 7 C 1.36936 * 120.00145 * 155.00393 * 6 4 2 8 8 H 1.08007 * 119.99576 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00242 * 179.97438 * 7 6 4 10 10 N 1.31625 * 119.99877 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00109 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.46873 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.46961 * 119.99744 * 11 9 7 14 14 H 1.48501 * 109.46969 * 239.99649 * 11 9 7 15 15 C 1.55153 * 102.94211 * 218.31833 * 4 2 1 16 16 C 1.54908 * 101.58630 * 35.49999 * 15 4 2 17 17 N 1.47022 * 109.88494 * 121.01779 * 2 1 3 18 18 C 1.34780 * 125.64449 * 298.54565 * 17 2 1 19 19 O 1.21698 * 120.00027 * 0.02562 * 18 17 2 20 20 C 1.46667 * 119.99730 * 179.97438 * 18 17 2 21 21 C 1.36720 * 125.85700 * 179.72126 * 20 18 17 22 22 C 1.39915 * 106.91371 * 179.84920 * 21 20 18 23 23 C 1.36517 * 107.02272 * 0.40889 * 22 21 20 24 24 C 1.47729 * 125.76885 * 179.72527 * 23 22 21 25 25 C 1.40037 * 120.93454 * 359.71797 * 24 23 22 26 26 C 1.37946 * 118.98508 * 179.80003 * 25 24 23 27 27 N 1.31927 * 120.91242 * 0.48324 * 26 25 24 28 28 C 1.31930 * 122.07351 * 359.74242 * 27 26 25 29 29 C 1.37940 * 120.90798 * 0.02562 * 28 27 26 30 30 O 1.34389 * 108.46142 * 359.74484 * 23 22 21 31 31 H 1.09000 * 109.46713 * 300.70085 * 1 2 3 32 32 H 1.08998 * 109.47126 * 60.69984 * 1 2 3 33 33 H 1.09002 * 109.46967 * 180.70601 * 1 2 3 34 34 H 0.97002 * 119.99779 * 334.99569 * 6 4 2 35 35 H 0.96998 * 119.99493 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00338 * 277.42810 * 15 4 2 37 37 H 1.09003 * 111.00533 * 153.57766 * 15 4 2 38 38 H 1.08992 * 110.36921 * 204.15530 * 16 15 4 39 39 H 1.09001 * 110.45822 * 81.87204 * 16 15 4 40 40 H 1.08002 * 126.54335 * 359.97420 * 21 20 18 41 41 H 1.08000 * 126.49414 * 180.12919 * 22 21 20 42 42 H 1.08001 * 120.50426 * 0.02562 * 25 24 23 43 43 H 1.08005 * 119.54073 * 180.22923 * 26 25 24 44 44 H 1.07998 * 119.54446 * 179.97438 * 28 27 26 45 45 H 1.08002 * 120.50682 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 2.3556 -0.0452 -2.0190 6 7 1.0531 -1.6874 -1.7473 7 6 1.0691 -2.0643 -3.0636 8 1 1.8225 -1.6694 -3.7292 9 6 0.1172 -2.9538 -3.5426 10 7 -0.8006 -3.4354 -2.7312 11 14 0.1386 -3.4674 -5.3385 12 1 1.2619 -2.7893 -6.0338 13 1 0.3152 -4.9390 -5.4304 14 1 -1.1445 -3.0818 -5.9789 15 6 3.2918 -1.5108 -0.6894 16 6 2.8177 -1.8763 0.7394 17 7 2.0301 -0.7124 1.1849 18 6 1.8051 -0.3602 2.4662 19 8 1.1358 0.6245 2.7180 20 6 2.3659 -1.1644 3.5571 21 6 2.2184 -0.9153 4.8933 22 6 2.9075 -1.9250 5.5740 23 6 3.4548 -2.7431 4.6281 24 6 4.2760 -3.9420 4.8939 25 6 4.5686 -4.3379 6.2048 26 6 5.3357 -5.4665 6.4068 27 7 5.7988 -6.1627 5.3864 28 6 5.5510 -5.8225 4.1361 29 6 4.7887 -4.7112 3.8419 30 8 3.1205 -2.2732 3.4142 31 1 -0.3633 0.5247 0.8836 32 1 -0.3633 0.5029 -0.8962 33 1 -0.3633 -1.0276 0.0127 34 1 0.3763 -2.0418 -1.1495 35 1 -1.4656 -4.0573 -3.0659 36 1 4.1682 -0.8634 -0.6566 37 1 3.4921 -2.4074 -1.2759 38 1 3.6743 -2.0285 1.3959 39 1 2.1942 -2.7701 0.7169 40 1 1.6722 -0.0968 5.3384 41 1 2.9942 -2.0337 6.6450 42 1 4.1962 -3.7704 7.0449 43 1 5.5637 -5.7821 7.4143 44 1 5.9511 -6.4219 3.3317 45 1 4.5901 -4.4384 2.8160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986360926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:13 Heat of formation + Delta-G solvation = 25.453974 kcal Electronic energy + Delta-G solvation = -29239.830020 eV Core-core repulsion = 25224.021442 eV Total energy + Delta-G solvation = -4015.808577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.86731 -41.27237 -40.88299 -38.97359 -35.85362 -34.86717 -33.99879 -33.43182 -32.34402 -32.21926 -31.05514 -29.80459 -26.83659 -26.00084 -25.42128 -24.71411 -23.96958 -22.66513 -22.24434 -21.35771 -20.44230 -19.42109 -18.94586 -18.24941 -17.83021 -17.40236 -17.10203 -16.73268 -16.56082 -16.28785 -15.82155 -15.50105 -15.40725 -14.87188 -14.83347 -14.69805 -14.55978 -14.31205 -14.13548 -14.05460 -13.91313 -13.72271 -13.30677 -13.00081 -12.89577 -12.60908 -12.58978 -12.41715 -12.29748 -12.00679 -11.74478 -11.68121 -11.49341 -11.33663 -11.08741 -10.94913 -10.57310 -10.19242 -9.88400 -9.32340 -9.01593 -7.92592 -5.21199 -0.69948 0.13211 0.36899 1.29752 1.43005 1.49489 1.50568 1.59764 1.87110 2.00905 2.57308 2.84129 3.09995 3.37236 3.47084 3.54449 3.66539 3.76090 3.82857 3.87381 3.93589 3.99219 4.11079 4.20132 4.22243 4.33111 4.41647 4.44714 4.51719 4.58340 4.66570 4.76098 4.77900 4.83583 4.88010 4.95683 5.01613 5.05017 5.14020 5.27035 5.28908 5.30287 5.39544 5.56988 5.63871 5.73891 6.28444 6.31407 6.83162 6.94982 7.35971 8.08451 8.32332 9.30862 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011564 B = 0.003003 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.737765 B = 9322.093103 C =11105.264667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.130 3.870 3 H 0.092 0.908 4 C 0.165 3.835 5 H 0.083 0.917 6 N -0.724 5.724 7 C -0.233 4.233 8 H 0.083 0.917 9 C -0.074 4.074 10 N -0.970 5.970 11 Si 0.969 3.031 12 H -0.263 1.263 13 H -0.298 1.298 14 H -0.300 1.300 15 C -0.146 4.146 16 C 0.112 3.888 17 N -0.598 5.598 18 C 0.606 3.394 19 O -0.552 6.552 20 C -0.081 4.081 21 C -0.117 4.117 22 C -0.175 4.175 23 C 0.035 3.965 24 C 0.008 3.992 25 C -0.141 4.141 26 C 0.100 3.900 27 N -0.505 5.505 28 C 0.098 3.902 29 C -0.166 4.166 30 O -0.160 6.160 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.376 0.624 35 H 0.248 0.752 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.176 0.824 41 H 0.199 0.801 42 H 0.174 0.826 43 H 0.194 0.806 44 H 0.177 0.823 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.234 0.693 20.011 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.027 3.973 3 H 0.110 0.890 4 C 0.055 3.945 5 H 0.100 0.900 6 N -0.365 5.365 7 C -0.364 4.364 8 H 0.101 0.899 9 C -0.266 4.266 10 N -0.621 5.621 11 Si 0.799 3.201 12 H -0.187 1.187 13 H -0.225 1.225 14 H -0.227 1.227 15 C -0.186 4.186 16 C -0.010 4.010 17 N -0.329 5.329 18 C 0.396 3.604 19 O -0.434 6.434 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.194 4.194 23 C -0.016 4.016 24 C 0.000 4.000 25 C -0.160 4.160 26 C -0.056 4.056 27 N -0.215 5.215 28 C -0.058 4.058 29 C -0.186 4.186 30 O -0.056 6.056 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.193 0.807 41 H 0.216 0.784 42 H 0.191 0.809 43 H 0.210 0.790 44 H 0.194 0.806 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.516 0.355 19.849 24.593 hybrid contribution -1.417 0.152 -1.199 1.862 sum 13.099 0.507 18.650 22.796 Atomic orbital electron populations 1.21779 0.95225 1.01091 1.01505 1.22012 0.94535 0.96502 0.84273 0.89027 1.21429 0.89039 0.91372 0.92693 0.89952 1.42700 1.33720 1.51969 1.08147 1.19673 1.09958 1.19530 0.87258 0.89915 1.25497 0.98346 1.01207 1.01563 1.69834 1.19723 1.36690 1.35823 0.85129 0.77171 0.77164 0.80611 1.18707 1.22511 1.22727 1.23401 0.98998 1.02124 0.94117 1.22355 0.94701 0.87222 0.96675 1.48583 1.51006 1.28754 1.04584 1.16459 0.80055 0.83370 0.80505 1.90829 1.41486 1.27781 1.83272 1.22006 1.04048 0.91144 0.96145 1.22161 1.00121 1.00967 0.90469 1.22156 1.00657 0.94496 1.02067 1.21019 1.01248 0.96889 0.82466 1.18281 0.95475 0.90947 0.95314 1.22444 0.99173 0.98665 0.95719 1.23289 0.92375 0.90474 0.99446 1.67698 1.21398 1.31831 1.00562 1.23018 0.94201 0.94091 0.94466 1.22476 0.98925 0.96648 1.00507 1.84180 1.54189 1.35544 1.31698 0.92722 0.91640 0.94244 0.78981 0.94275 0.88821 0.90284 0.88974 0.93096 0.80661 0.78354 0.80858 0.78954 0.80567 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 8.51 71.98 0.61 -4.68 16 2 C 0.13 4.48 3.42 45.34 0.16 4.63 16 3 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 4 C 0.16 5.98 3.48 46.18 0.16 6.14 16 5 H 0.08 2.85 8.09 -2.39 -0.02 2.83 16 6 N -0.72 -34.00 4.55 -317.32 -1.44 -35.45 16 7 C -0.23 -12.05 9.96 84.03 0.84 -11.22 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 10 N -0.97 -58.11 13.06 21.65 0.28 -57.82 16 11 Si 0.97 44.84 29.55 68.60 2.03 46.86 16 12 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 13 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 14 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 15 C -0.15 -4.44 6.77 31.98 0.22 -4.22 16 16 C 0.11 3.45 6.14 86.85 0.53 3.99 16 17 N -0.60 -19.80 3.07 -792.71 -2.43 -22.23 16 18 C 0.61 20.43 7.61 86.44 0.66 21.09 16 19 O -0.55 -20.96 15.89 -4.34 -0.07 -21.03 16 20 C -0.08 -2.29 6.93 24.12 0.17 -2.12 16 21 C -0.12 -2.60 10.59 22.32 0.24 -2.36 16 22 C -0.17 -2.95 10.26 22.27 0.23 -2.72 16 23 C 0.04 0.73 7.05 24.38 0.17 0.90 16 24 C 0.01 0.14 5.91 -19.90 -0.12 0.03 16 25 C -0.14 -1.68 9.64 22.64 0.22 -1.46 16 26 C 0.10 1.26 11.17 84.61 0.95 2.21 16 27 N -0.51 -9.02 10.34 -196.17 -2.03 -11.05 16 28 C 0.10 1.68 11.17 84.61 0.95 2.62 16 29 C -0.17 -3.06 9.82 22.64 0.22 -2.84 16 30 O -0.16 -4.16 7.68 -9.13 -0.07 -4.23 16 31 H 0.05 2.08 6.87 -2.39 -0.02 2.06 16 32 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.04 1.72 6.23 -2.39 -0.01 1.71 16 34 H 0.38 19.56 5.69 -92.71 -0.53 19.03 16 35 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.09 2.45 6.21 -2.39 -0.01 2.44 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.20 1.61 7.33 -2.91 -0.02 1.59 16 42 H 0.17 0.86 7.11 -2.91 -0.02 0.84 16 43 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.14 2.58 7.99 -2.91 -0.02 2.56 16 Total: -1.00 -69.62 375.96 3.42 -66.20 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.50 Total: 32.40 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.66 Total: 6.35 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -5.62 Total: -126.56 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.14 Total: -25.26 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.62 3.42 -66.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986360926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.650 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds