Wall clock time and date at job start Wed Apr 1 2020 00:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87160 * 2 1 4 4 C 1.54315 * 109.88156 * 238.98260 * 2 1 3 5 5 H 1.09006 * 110.87609 * 336.82527 * 4 2 1 6 6 N 1.46497 * 110.72358 * 100.02690 * 4 2 1 7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2 8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4 10 10 N 1.31626 * 119.99782 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47186 * 89.99300 * 11 9 7 13 13 H 1.48499 * 109.47489 * 210.00010 * 11 9 7 14 14 H 1.48506 * 109.46865 * 329.99884 * 11 9 7 15 15 C 1.55156 * 102.94436 * 218.38969 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.88216 * 121.17092 * 2 1 3 18 18 C 1.34774 * 125.65425 * 298.39752 * 17 2 1 19 19 O 1.21708 * 119.99894 * 359.97438 * 18 17 2 20 20 C 1.46573 * 120.00386 * 179.97438 * 18 17 2 21 21 C 1.36569 * 126.56387 * 179.70744 * 20 18 17 22 22 N 1.33320 * 107.65273 * 179.83656 * 21 20 18 23 23 C 1.31630 * 108.95302 * 0.43143 * 22 21 20 24 24 C 1.47709 * 125.53798 * 179.72842 * 23 22 21 25 25 C 1.39642 * 120.14707 * 179.72689 * 24 23 22 26 26 C 1.37950 * 119.84193 * 179.74174 * 25 24 23 27 27 C 1.38366 * 120.15256 * 0.53725 * 26 25 24 28 28 C 1.38376 * 120.30193 * 359.73930 * 27 26 25 29 29 C 1.37931 * 120.15378 * 359.97438 * 28 27 26 30 30 O 1.34203 * 108.91950 * 359.73201 * 23 22 21 31 31 H 1.09001 * 109.47001 * 181.02018 * 1 2 3 32 32 H 1.09003 * 109.47113 * 301.01603 * 1 2 3 33 33 H 1.09000 * 109.46955 * 61.01187 * 1 2 3 34 34 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 35 35 H 0.97006 * 120.00022 * 180.02562 * 10 9 7 36 36 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 37 37 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 38 38 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 39 39 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 40 40 H 1.07996 * 126.17261 * 359.97438 * 21 20 18 41 41 H 1.07993 * 120.07997 * 0.02562 * 25 24 23 42 42 H 1.07999 * 119.92019 * 180.27278 * 26 25 24 43 43 H 1.08002 * 119.84994 * 179.71837 * 27 26 25 44 44 H 1.08000 * 119.92241 * 180.02562 * 28 27 26 45 45 H 1.08001 * 120.07643 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3064 -1.4436 -1.6231 6 7 2.4555 0.1991 -2.2872 7 6 2.5574 -0.2176 -3.5876 8 1 2.3429 -1.2446 -3.8439 9 6 2.9376 0.6795 -4.5763 10 7 3.1995 1.9310 -4.2638 11 14 3.0773 0.1108 -6.3501 12 1 1.7715 0.2942 -7.0331 13 1 4.1168 0.9110 -7.0461 14 1 3.4548 -1.3251 -6.3812 15 6 3.2876 -1.5133 -0.6945 16 6 2.8156 -1.8804 0.7345 17 7 2.0300 -0.7156 1.1829 18 6 1.8074 -0.3654 2.4652 19 8 1.1413 0.6209 2.7198 20 6 2.3675 -1.1722 3.5532 21 6 2.2318 -0.9391 4.8920 22 7 2.8867 -1.9036 5.5387 23 6 3.4290 -2.7173 4.6575 24 6 4.2416 -3.9091 4.9754 25 6 4.7594 -4.6995 3.9473 26 6 5.5220 -5.8081 4.2514 27 6 5.7649 -6.1438 5.5716 28 6 5.2500 -5.3681 6.5953 29 6 4.4908 -4.2536 6.3055 30 8 3.1235 -2.2880 3.4232 31 1 -0.3633 -1.0275 0.0183 32 1 -0.3633 0.5295 0.8808 33 1 -0.3633 0.4980 -0.8989 34 1 2.6485 1.1215 -2.0570 35 1 3.4648 2.5581 -4.9548 36 1 3.4852 -2.4093 -1.2829 37 1 4.1656 -0.8681 -0.6622 38 1 2.1900 -2.7727 0.7099 39 1 3.6731 -2.0353 1.3893 40 1 1.6898 -0.1223 5.3450 41 1 4.5672 -4.4409 2.9166 42 1 5.9268 -6.4178 3.4572 43 1 6.3588 -7.0154 5.8041 44 1 5.4437 -5.6356 7.6236 45 1 4.0898 -3.6489 7.1055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986396026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:52 Heat of formation + Delta-G solvation = 37.422885 kcal Electronic energy + Delta-G solvation = -28828.458509 eV Core-core repulsion = 24813.168943 eV Total energy + Delta-G solvation = -4015.289566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.59257 -39.99840 -39.40979 -37.57938 -35.25962 -34.16766 -32.78761 -31.75554 -31.42026 -31.03216 -29.80180 -28.82241 -25.29903 -24.94352 -23.86944 -23.14551 -22.86414 -21.96309 -21.48973 -20.43654 -19.62283 -18.10494 -17.39340 -17.21333 -17.12987 -16.45443 -16.08906 -15.65687 -15.26365 -14.93356 -14.70715 -14.13885 -14.05331 -13.94599 -13.81949 -13.57445 -13.39209 -13.31954 -13.00597 -12.87727 -12.27018 -11.97381 -11.93776 -11.77274 -11.70674 -11.58347 -11.25511 -11.13073 -11.00688 -10.86465 -10.65328 -10.33530 -10.23186 -10.12524 -10.00008 -9.77294 -9.44039 -9.00042 -8.76369 -8.46635 -7.08893 -5.86008 -3.17008 0.06230 0.92910 1.10738 2.05396 2.30566 2.93975 3.04725 3.38168 3.38243 3.43380 3.45252 3.53941 4.33888 4.47352 4.50172 4.53505 4.63612 4.70835 4.91229 4.93788 5.00611 5.05597 5.16434 5.27431 5.34243 5.39425 5.42232 5.55772 5.57359 5.60796 5.71339 5.81613 5.85642 5.94957 5.99050 6.01043 6.04117 6.07244 6.22716 6.36024 6.41290 6.49769 6.52803 6.58359 6.84424 7.24717 7.49017 7.61336 7.99155 8.30930 9.42626 9.95969 10.30807 11.36027 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.002521 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.286549 B =11105.526972 C =12668.949201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.083 0.917 4 C 0.177 3.823 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.155 4.155 16 C 0.096 3.904 17 N -0.595 5.595 18 C 0.616 3.384 19 O -0.518 6.518 20 C -0.092 4.092 21 C 0.052 3.948 22 N -0.477 5.477 23 C 0.250 3.750 24 C -0.025 4.025 25 C -0.084 4.084 26 C -0.121 4.121 27 C -0.098 4.098 28 C -0.124 4.124 29 C -0.067 4.067 30 O -0.176 6.176 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.200 0.800 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 -15.879 21.049 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.101 0.899 4 C 0.066 3.934 5 H 0.085 0.915 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.196 4.196 16 C -0.027 4.027 17 N -0.327 5.327 18 C 0.402 3.598 19 O -0.396 6.396 20 C -0.148 4.148 21 C -0.093 4.093 22 N -0.205 5.205 23 C 0.048 3.952 24 C -0.027 4.027 25 C -0.103 4.103 26 C -0.139 4.139 27 C -0.116 4.116 28 C -0.142 4.142 29 C -0.086 4.086 30 O -0.062 6.062 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.217 0.783 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.733 -15.484 21.616 26.729 hybrid contribution 0.177 0.143 -1.638 1.653 sum 2.909 -15.341 19.978 25.356 Atomic orbital electron populations 1.22069 0.94443 1.01836 1.03027 1.22015 0.94730 0.97002 0.83818 0.89870 1.21243 0.93549 0.91620 0.87032 0.91511 1.42346 1.80922 1.09092 1.03110 1.19183 1.39455 0.95191 0.83735 0.90963 1.24776 1.01969 0.95644 0.98212 1.69668 1.52350 1.02993 1.32641 0.86174 0.77389 0.77614 0.84866 1.21602 1.21734 1.20689 1.23596 1.01504 1.01919 0.92592 1.22551 0.94837 0.87908 0.97360 1.48467 1.51030 1.28642 1.04584 1.15932 0.80574 0.83269 0.79980 1.90892 1.40251 1.25914 1.82534 1.23379 1.03174 0.90559 0.97642 1.23567 0.98509 0.98361 0.88864 1.70582 1.12420 1.04426 1.33064 1.24060 0.97511 0.96153 0.77434 1.17334 0.99509 0.91194 0.94635 1.21350 0.95807 0.94128 0.99054 1.21130 0.98705 0.97031 0.97027 1.21432 0.98199 0.99207 0.92802 1.21137 0.98138 0.94987 0.99916 1.21227 0.96205 0.96405 0.94799 1.84674 1.53377 1.35654 1.32492 0.92940 0.91841 0.90726 0.77933 0.93319 0.90294 0.90488 0.91395 0.90759 0.78275 0.84807 0.84942 0.85347 0.84982 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.10 37.16 0.34 -2.19 16 2 C 0.13 2.21 3.21 -66.96 -0.21 2.00 16 3 H 0.08 1.61 7.68 -51.93 -0.40 1.21 16 4 C 0.18 3.31 3.11 -66.10 -0.21 3.11 16 5 H 0.07 1.24 7.84 -51.93 -0.41 0.84 16 6 N -0.71 -16.95 5.25 -51.66 -0.27 -17.22 16 7 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 11 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 C -0.15 -2.50 6.77 -24.58 -0.17 -2.67 16 16 C 0.10 1.33 6.18 -2.50 -0.02 1.31 16 17 N -0.60 -9.43 3.07 -164.55 -0.50 -9.93 16 18 C 0.62 9.96 7.61 -12.90 -0.10 9.87 16 19 O -0.52 -9.49 15.94 5.18 0.08 -9.41 16 20 C -0.09 -1.30 6.96 -36.83 -0.26 -1.56 16 21 C 0.05 0.67 11.64 -17.51 -0.20 0.47 16 22 N -0.48 -6.11 10.86 -11.44 -0.12 -6.24 16 23 C 0.25 3.04 7.88 -13.77 -0.11 2.93 16 24 C -0.03 -0.25 5.87 -104.98 -0.62 -0.87 16 25 C -0.08 -0.70 9.72 -39.16 -0.38 -1.08 16 26 C -0.12 -0.79 10.03 -39.64 -0.40 -1.18 16 27 C -0.10 -0.56 10.04 -39.48 -0.40 -0.96 16 28 C -0.12 -0.77 10.03 -39.64 -0.40 -1.16 16 29 C -0.07 -0.55 9.69 -39.17 -0.38 -0.93 16 30 O -0.18 -2.27 7.79 2.84 0.02 -2.25 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.39 9.92 7.51 -40.82 -0.31 9.61 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.07 0.96 6.25 -51.93 -0.32 0.63 16 40 H 0.20 2.16 8.06 -52.49 -0.42 1.73 16 41 H 0.13 1.03 7.89 -52.49 -0.41 0.62 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 44 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 45 H 0.14 1.10 7.83 -52.49 -0.41 0.69 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -31.23 381.11 -9.07 -40.29 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.97 Total: 8.81 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -3.75 Total: 0.14 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.18 Total: -59.95 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.10 Total: -11.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.23 -9.07 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986396026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.716 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds