Wall clock time and date at job start Wed Apr 1 2020 00:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87160 * 2 1 4 4 C 1.54315 * 109.88156 * 238.98260 * 2 1 3 5 5 H 1.09006 * 110.87609 * 336.82527 * 4 2 1 6 6 N 1.46497 * 110.72358 * 100.02690 * 4 2 1 7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2 8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4 10 10 N 1.31626 * 119.99782 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47186 * 89.99300 * 11 9 7 13 13 H 1.48499 * 109.47489 * 210.00010 * 11 9 7 14 14 H 1.48506 * 109.46865 * 329.99884 * 11 9 7 15 15 C 1.55156 * 102.94436 * 218.38969 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.88216 * 121.17092 * 2 1 3 18 18 C 1.34774 * 125.65425 * 298.39752 * 17 2 1 19 19 O 1.21708 * 119.99894 * 359.97438 * 18 17 2 20 20 C 1.46573 * 120.00386 * 179.97438 * 18 17 2 21 21 C 1.36569 * 126.56387 * 179.70744 * 20 18 17 22 22 N 1.33320 * 107.65273 * 179.83656 * 21 20 18 23 23 C 1.31630 * 108.95302 * 0.43143 * 22 21 20 24 24 C 1.47709 * 125.53798 * 179.72842 * 23 22 21 25 25 C 1.39642 * 120.14707 * 179.72689 * 24 23 22 26 26 C 1.37950 * 119.84193 * 179.74174 * 25 24 23 27 27 C 1.38366 * 120.15256 * 0.53725 * 26 25 24 28 28 C 1.38376 * 120.30193 * 359.73930 * 27 26 25 29 29 C 1.37931 * 120.15378 * 359.97438 * 28 27 26 30 30 O 1.34203 * 108.91950 * 359.73201 * 23 22 21 31 31 H 1.09001 * 109.47001 * 181.02018 * 1 2 3 32 32 H 1.09003 * 109.47113 * 301.01603 * 1 2 3 33 33 H 1.09000 * 109.46955 * 61.01187 * 1 2 3 34 34 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 35 35 H 0.97006 * 120.00022 * 180.02562 * 10 9 7 36 36 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 37 37 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 38 38 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 39 39 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 40 40 H 1.07996 * 126.17261 * 359.97438 * 21 20 18 41 41 H 1.07993 * 120.07997 * 0.02562 * 25 24 23 42 42 H 1.07999 * 119.92019 * 180.27278 * 26 25 24 43 43 H 1.08002 * 119.84994 * 179.71837 * 27 26 25 44 44 H 1.08000 * 119.92241 * 180.02562 * 28 27 26 45 45 H 1.08001 * 120.07643 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3064 -1.4436 -1.6231 6 7 2.4555 0.1991 -2.2872 7 6 2.5574 -0.2176 -3.5876 8 1 2.3429 -1.2446 -3.8439 9 6 2.9376 0.6795 -4.5763 10 7 3.1995 1.9310 -4.2638 11 14 3.0773 0.1108 -6.3501 12 1 1.7715 0.2942 -7.0331 13 1 4.1168 0.9110 -7.0461 14 1 3.4548 -1.3251 -6.3812 15 6 3.2876 -1.5133 -0.6945 16 6 2.8156 -1.8804 0.7345 17 7 2.0300 -0.7156 1.1829 18 6 1.8074 -0.3654 2.4652 19 8 1.1413 0.6209 2.7198 20 6 2.3675 -1.1722 3.5532 21 6 2.2318 -0.9391 4.8920 22 7 2.8867 -1.9036 5.5387 23 6 3.4290 -2.7173 4.6575 24 6 4.2416 -3.9091 4.9754 25 6 4.7594 -4.6995 3.9473 26 6 5.5220 -5.8081 4.2514 27 6 5.7649 -6.1438 5.5716 28 6 5.2500 -5.3681 6.5953 29 6 4.4908 -4.2536 6.3055 30 8 3.1235 -2.2880 3.4232 31 1 -0.3633 -1.0275 0.0183 32 1 -0.3633 0.5295 0.8808 33 1 -0.3633 0.4980 -0.8989 34 1 2.6485 1.1215 -2.0570 35 1 3.4648 2.5581 -4.9548 36 1 3.4852 -2.4093 -1.2829 37 1 4.1656 -0.8681 -0.6622 38 1 2.1900 -2.7727 0.7099 39 1 3.6731 -2.0353 1.3893 40 1 1.6898 -0.1223 5.3450 41 1 4.5672 -4.4409 2.9166 42 1 5.9268 -6.4178 3.4572 43 1 6.3588 -7.0154 5.8041 44 1 5.4437 -5.6356 7.6236 45 1 4.0898 -3.6489 7.1055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986396026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:51 Heat of formation + Delta-G solvation = 17.475660 kcal Electronic energy + Delta-G solvation = -28829.323486 eV Core-core repulsion = 24813.168943 eV Total energy + Delta-G solvation = -4016.154543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.57198 -41.30028 -39.97284 -38.96536 -36.32801 -35.85084 -33.71107 -33.25313 -32.39324 -31.94703 -31.18626 -30.01748 -26.92276 -25.92382 -25.00233 -24.54141 -23.79668 -22.89962 -22.27103 -21.80869 -20.94243 -19.24634 -18.90017 -18.40032 -18.16559 -17.52010 -17.05770 -16.71823 -16.36043 -16.29931 -15.68238 -15.50401 -15.43523 -14.89615 -14.82618 -14.67534 -14.52704 -14.37335 -14.21735 -13.91384 -13.72894 -13.37085 -13.17890 -12.95485 -12.72902 -12.69871 -12.60138 -12.43492 -12.25644 -12.19351 -12.09181 -11.91641 -11.74897 -11.66051 -11.38040 -10.93028 -10.91201 -9.96494 -9.94286 -9.38965 -9.04802 -7.94246 -5.24692 -0.78425 0.26823 0.41207 1.03945 1.40693 1.49956 1.51278 1.59397 1.74500 1.86672 2.56952 2.65791 2.81829 3.27406 3.40060 3.61388 3.67553 3.72398 3.92144 3.96455 3.99663 4.06969 4.14353 4.24608 4.25783 4.32142 4.35259 4.44580 4.46346 4.55947 4.60605 4.66605 4.83154 4.84845 4.97898 4.98232 5.08235 5.15229 5.17126 5.20861 5.36759 5.38072 5.46012 5.52491 5.54328 5.92451 6.16812 6.25853 6.33982 6.73044 7.32507 8.03033 8.27224 9.29137 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.002521 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.286549 B =11105.526972 C =12668.949201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 H 0.056 0.944 4 C 0.173 3.827 5 H 0.075 0.925 6 N -0.728 5.728 7 C -0.236 4.236 8 H 0.085 0.915 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.289 1.289 13 H -0.300 1.300 14 H -0.265 1.265 15 C -0.145 4.145 16 C 0.106 3.894 17 N -0.598 5.598 18 C 0.617 3.383 19 O -0.548 6.548 20 C -0.118 4.118 21 C 0.064 3.936 22 N -0.495 5.495 23 C 0.264 3.736 24 C -0.057 4.057 25 C -0.091 4.091 26 C -0.124 4.124 27 C -0.088 4.088 28 C -0.124 4.124 29 C -0.074 4.074 30 O -0.177 6.177 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.372 0.628 35 H 0.250 0.750 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.215 0.785 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 -19.581 22.203 29.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.074 0.926 4 C 0.063 3.937 5 H 0.093 0.907 6 N -0.367 5.367 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.216 1.216 13 H -0.227 1.227 14 H -0.189 1.189 15 C -0.186 4.186 16 C -0.016 4.016 17 N -0.329 5.329 18 C 0.406 3.594 19 O -0.428 6.428 20 C -0.173 4.173 21 C -0.081 4.081 22 N -0.223 5.223 23 C 0.063 3.937 24 C -0.058 4.058 25 C -0.111 4.111 26 C -0.142 4.142 27 C -0.106 4.106 28 C -0.141 4.141 29 C -0.094 4.094 30 O -0.064 6.064 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.231 0.769 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.177 0.823 44 H 0.176 0.824 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.617 -19.256 22.804 30.065 hybrid contribution -0.020 1.118 -1.808 2.126 sum 3.597 -18.138 20.996 27.978 Atomic orbital electron populations 1.21968 0.93475 1.02679 1.02276 1.21759 0.95409 0.95651 0.84228 0.92602 1.21416 0.94800 0.91090 0.86354 0.90672 1.42508 1.81286 1.09296 1.03633 1.19601 1.36985 0.95439 0.84682 0.89762 1.25580 1.03130 0.95867 1.02187 1.69836 1.54689 1.04226 1.33379 0.85144 0.76775 0.77725 0.80121 1.21625 1.22728 1.18930 1.23405 0.99288 1.01639 0.94231 1.22594 0.95472 0.87792 0.95744 1.48466 1.51260 1.29035 1.04178 1.16089 0.80077 0.83025 0.80220 1.90865 1.41657 1.27250 1.83050 1.22905 1.05438 0.91784 0.97173 1.23877 0.97408 0.98278 0.88563 1.70644 1.13463 1.04951 1.33226 1.24702 0.96034 0.96000 0.76940 1.17544 1.01122 0.91322 0.95861 1.21501 0.96100 0.94635 0.98841 1.21461 0.97969 0.96459 0.98273 1.21864 0.97040 0.99492 0.92233 1.21475 0.97084 0.93996 1.01562 1.21357 0.96672 0.97239 0.94087 1.84634 1.53492 1.35363 1.32936 0.91226 0.92446 0.91561 0.79604 0.94114 0.88703 0.92458 0.88978 0.89490 0.76876 0.84675 0.82708 0.82293 0.82419 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.10 71.98 0.65 -4.09 16 2 C 0.13 4.70 3.21 45.34 0.15 4.85 16 3 H 0.06 2.28 7.68 -2.39 -0.02 2.26 16 4 C 0.17 6.41 3.11 46.18 0.14 6.55 16 5 H 0.08 2.68 7.84 -2.38 -0.02 2.67 16 6 N -0.73 -35.09 5.25 -317.34 -1.67 -36.76 16 7 C -0.24 -12.35 9.98 84.03 0.84 -11.51 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 10 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 11 Si 0.97 44.74 29.55 68.60 2.03 46.77 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 13 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 15 C -0.14 -4.52 6.77 31.98 0.22 -4.31 16 16 C 0.11 2.75 6.18 86.85 0.54 3.29 16 17 N -0.60 -18.79 3.07 -792.73 -2.43 -21.22 16 18 C 0.62 20.09 7.61 86.42 0.66 20.75 16 19 O -0.55 -20.56 15.94 -4.37 -0.07 -20.63 16 20 C -0.12 -3.30 6.96 24.06 0.17 -3.13 16 21 C 0.06 1.62 11.64 84.08 0.98 2.60 16 22 N -0.49 -12.42 10.86 -304.10 -3.30 -15.73 16 23 C 0.26 6.21 7.88 87.23 0.69 6.90 16 24 C -0.06 -1.05 5.87 -20.10 -0.12 -1.16 16 25 C -0.09 -1.34 9.72 22.54 0.22 -1.12 16 26 C -0.12 -1.20 10.03 22.23 0.22 -0.98 16 27 C -0.09 -0.66 10.04 22.33 0.22 -0.44 16 28 C -0.12 -1.14 10.03 22.23 0.22 -0.92 16 29 C -0.07 -1.10 9.69 22.54 0.22 -0.88 16 30 O -0.18 -4.43 7.79 -12.75 -0.10 -4.53 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.93 6.90 -2.39 -0.02 1.92 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.37 19.88 7.51 -92.70 -0.70 19.18 16 35 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 36 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.09 2.09 6.25 -2.39 -0.01 2.08 16 40 H 0.21 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.14 1.84 7.89 -2.91 -0.02 1.82 16 42 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 43 H 0.16 0.25 8.06 -2.91 -0.02 0.22 16 44 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 45 H 0.14 2.01 7.83 -2.91 -0.02 1.99 16 Total: -1.00 -68.83 381.11 1.55 -67.27 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.33 Total: 30.49 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.48 Total: 12.67 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -7.12 Total: -132.05 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.17 Total: -25.16 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.83 1.55 -67.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986396026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.750 kcal (2) G-P(sol) polarization free energy of solvation -68.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds