Wall clock time and date at job start Wed Apr 1 2020 00:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.99992 * 2 1 4 4 C 1.54331 * 109.88231 * 238.90963 * 2 1 3 5 5 H 1.08994 * 110.71841 * 336.92556 * 4 2 1 6 6 N 1.46505 * 110.72165 * 100.02716 * 4 2 1 7 7 C 1.36933 * 119.99854 * 202.55810 * 6 4 2 8 8 H 1.08003 * 119.99963 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99765 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99751 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00349 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47243 * 270.00508 * 11 9 7 13 13 H 1.48498 * 109.46852 * 29.99838 * 11 9 7 14 14 H 1.48497 * 109.47140 * 149.99865 * 11 9 7 15 15 C 1.55155 * 103.09780 * 218.47426 * 4 2 1 16 16 C 1.55119 * 101.48650 * 35.28441 * 15 4 2 17 17 N 1.47019 * 109.88326 * 121.09901 * 2 1 3 18 18 C 1.34770 * 125.64818 * 298.32244 * 17 2 1 19 19 O 1.21591 * 120.00044 * 180.92672 * 18 17 2 20 20 C 1.47552 * 120.00171 * 0.92548 * 18 17 2 21 21 C 1.38909 * 120.29744 * 351.73425 * 20 18 17 22 22 C 1.40556 * 118.06620 * 179.78492 * 21 20 18 23 23 C 1.40544 * 121.12445 * 180.19102 * 22 21 20 24 24 C 1.36148 * 119.64105 * 180.28580 * 23 22 21 25 25 C 1.39328 * 120.82825 * 359.97438 * 24 23 22 26 26 C 1.36137 * 121.08085 * 0.02562 * 25 24 23 27 27 C 1.40530 * 119.82608 * 359.97438 * 26 25 24 28 28 N 1.33823 * 120.74826 * 179.97438 * 27 26 25 29 29 C 1.31374 * 121.66083 * 180.02562 * 28 27 26 30 30 O 1.35410 * 119.32138 * 180.02562 * 29 28 27 31 31 H 1.08998 * 109.47023 * 168.64062 * 1 2 3 32 32 H 1.08992 * 109.47416 * 288.64105 * 1 2 3 33 33 H 1.09003 * 109.47045 * 48.64309 * 1 2 3 34 34 H 0.97005 * 119.99706 * 22.55217 * 6 4 2 35 35 H 0.97003 * 120.00022 * 180.02562 * 10 9 7 36 36 H 1.09010 * 111.00342 * 153.48455 * 15 4 2 37 37 H 1.08998 * 111.01148 * 277.33731 * 15 4 2 38 38 H 1.09003 * 110.42048 * 204.28605 * 16 15 4 39 39 H 1.09003 * 110.20890 * 82.04263 * 16 15 4 40 40 H 1.07996 * 120.96994 * 0.02562 * 21 20 18 41 41 H 1.08003 * 120.17291 * 0.26240 * 23 22 21 42 42 H 1.08000 * 119.58212 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.45582 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.08640 * 179.97438 * 26 25 24 45 45 H 0.96700 * 114.00167 * 269.98388 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 1.3040 -1.4436 -1.6202 6 7 2.4555 0.1962 -2.2876 7 6 2.5063 -0.2087 -3.5947 8 1 2.2507 -1.2251 -3.8555 9 6 2.8854 0.6875 -4.5846 10 7 2.9338 0.2984 -5.8410 11 14 3.3255 2.4460 -4.1339 12 1 2.1049 3.2902 -4.1841 13 1 3.8933 2.4781 -2.7621 14 1 4.3282 2.9678 -5.0969 15 6 3.2870 -1.5176 -0.6959 16 6 2.8145 -1.8794 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.8085 -0.3614 2.4656 19 8 2.2874 -1.0197 3.3687 20 6 0.9849 0.8236 2.7729 21 6 0.5776 1.6770 1.7554 22 6 -0.2096 2.7892 2.1005 23 6 -0.6602 3.6919 1.1220 24 6 -1.4162 4.7625 1.4908 25 6 -1.7498 4.9748 2.8268 26 6 -1.3302 4.1206 3.8002 27 6 -0.5480 3.0037 3.4604 28 7 -0.1252 2.1524 4.4024 29 6 0.6072 1.1030 4.1050 30 8 1.0088 0.2722 5.0961 31 1 -0.3633 -1.0075 -0.2024 32 1 -0.3634 0.3285 0.9737 33 1 -0.3633 0.6790 -0.7714 34 1 2.6846 1.1093 -2.0534 35 1 3.1991 0.9245 -6.5328 36 1 3.4811 -2.4144 -1.2844 37 1 4.1664 -0.8744 -0.6652 38 1 3.6716 -2.0339 1.3921 39 1 2.1887 -2.7715 0.7126 40 1 0.8543 1.4893 0.7285 41 1 -0.4078 3.5373 0.0834 42 1 -1.7624 5.4553 0.7381 43 1 -2.3510 5.8311 3.0944 44 1 -1.5978 4.3008 4.8309 45 1 1.8585 0.5122 5.4903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986630916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:27 Heat of formation + Delta-G solvation = 49.304567 kcal Electronic energy + Delta-G solvation = -30156.669676 eV Core-core repulsion = 26141.895338 eV Total energy + Delta-G solvation = -4014.774338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.65388 -40.02611 -38.63012 -37.43848 -36.08347 -34.69382 -34.08571 -31.79022 -31.62077 -30.42445 -29.89336 -29.49217 -25.92440 -24.80074 -24.02830 -23.02250 -22.72182 -22.30281 -20.54950 -19.85740 -19.26604 -18.26923 -17.98383 -17.20854 -16.63230 -16.35966 -15.89540 -15.55511 -15.16291 -14.99759 -14.61746 -14.53389 -14.01267 -13.95731 -13.88063 -13.69536 -13.20760 -13.05884 -12.69059 -12.44445 -12.19994 -12.14192 -11.96119 -11.88999 -11.66804 -11.60697 -11.53112 -11.43013 -11.01876 -10.87252 -10.60020 -10.37751 -10.23348 -10.17760 -9.76060 -9.49740 -9.11095 -8.99490 -8.62737 -8.47250 -7.49239 -5.93380 -3.32293 -0.05446 0.32420 1.58279 2.27061 2.83477 3.08623 3.23247 3.24510 3.33468 3.37341 3.79618 4.08531 4.24347 4.34274 4.42624 4.50508 4.57309 4.67384 4.82472 4.85834 4.93636 4.99909 5.10230 5.12770 5.27465 5.31402 5.39737 5.47102 5.51036 5.59140 5.61052 5.67558 5.72626 5.84715 5.97708 6.00307 6.03731 6.08956 6.13330 6.19237 6.27325 6.44323 6.48481 6.65254 7.34244 7.45679 7.64091 7.79006 8.10803 8.24132 8.99545 9.71702 9.88517 11.24174 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.004126 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.671836 B = 6785.194203 C = 8908.085185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.100 3.900 3 H 0.085 0.915 4 C 0.184 3.816 5 H 0.080 0.920 6 N -0.738 5.738 7 C -0.252 4.252 8 H 0.093 0.907 9 C 0.012 3.988 10 N -0.927 5.927 11 Si 0.880 3.120 12 H -0.282 1.282 13 H -0.277 1.277 14 H -0.289 1.289 15 C -0.155 4.155 16 C 0.107 3.893 17 N -0.603 5.603 18 C 0.580 3.420 19 O -0.527 6.527 20 C -0.214 4.214 21 C -0.024 4.024 22 C -0.131 4.131 23 C -0.076 4.076 24 C -0.128 4.128 25 C -0.083 4.083 26 C -0.108 4.108 27 C 0.170 3.830 28 N -0.509 5.509 29 C 0.397 3.603 30 O -0.462 6.462 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.362 0.638 35 H 0.262 0.738 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.190 0.810 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 6.854 16.893 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.004 4.004 3 H 0.102 0.898 4 C 0.073 3.927 5 H 0.098 0.902 6 N -0.381 5.381 7 C -0.381 4.381 8 H 0.111 0.889 9 C -0.185 4.185 10 N -0.574 5.574 11 Si 0.710 3.290 12 H -0.209 1.209 13 H -0.203 1.203 14 H -0.215 1.215 15 C -0.196 4.196 16 C -0.015 4.015 17 N -0.337 5.337 18 C 0.369 3.631 19 O -0.405 6.405 20 C -0.221 4.221 21 C -0.048 4.048 22 C -0.133 4.133 23 C -0.095 4.095 24 C -0.146 4.146 25 C -0.103 4.103 26 C -0.127 4.127 27 C 0.049 3.951 28 N -0.228 5.228 29 C 0.202 3.798 30 O -0.270 6.270 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.195 0.805 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.206 0.794 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.694 6.273 17.964 20.524 hybrid contribution 0.980 1.352 -0.510 1.745 sum -6.714 7.624 17.454 20.195 Atomic orbital electron populations 1.22863 0.94472 1.04323 1.02513 1.22381 0.94493 0.96634 0.86871 0.89787 1.21239 0.94375 0.91207 0.85867 0.90197 1.42688 1.81907 1.09528 1.03926 1.19007 1.39846 0.98305 0.80949 0.88876 1.24660 1.01075 0.97662 0.95088 1.69687 1.53467 1.34980 0.99264 0.86632 0.78356 0.86427 0.77568 1.20859 1.20320 1.21540 1.23594 1.00620 1.02167 0.93202 1.22354 0.95171 0.87703 0.96271 1.48388 1.52072 1.28873 1.04337 1.17390 0.80449 0.83804 0.81459 1.90782 1.51163 1.54013 1.44520 1.20979 1.06355 1.00040 0.94706 1.23864 0.89287 0.89285 1.02409 1.18854 1.02322 0.97516 0.94636 1.21146 0.96001 0.93314 0.99050 1.20957 0.98964 0.98185 0.96466 1.21000 0.97945 0.98668 0.92716 1.20803 0.98003 0.93241 1.00621 1.18699 0.95094 0.93497 0.87837 1.67548 1.14235 1.04040 1.37011 1.19135 0.89324 0.85597 0.85696 1.84674 1.42844 1.48551 1.50929 0.90972 0.91402 0.89946 0.80513 0.92814 0.89679 0.90644 0.90566 0.91367 0.79367 0.84512 0.85076 0.85044 0.84537 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 7.82 37.16 0.29 -1.94 16 2 C 0.10 1.37 2.47 -66.95 -0.17 1.21 16 3 H 0.08 1.13 5.78 -51.93 -0.30 0.83 16 4 C 0.18 2.98 3.12 -66.09 -0.21 2.78 16 5 H 0.08 1.32 7.64 -51.93 -0.40 0.92 16 6 N -0.74 -14.99 5.04 -51.65 -0.26 -15.25 16 7 C -0.25 -6.35 10.45 -15.06 -0.16 -6.50 16 8 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 10 N -0.93 -27.25 13.97 55.49 0.78 -26.47 16 11 Si 0.88 20.13 27.74 -169.99 -4.71 15.41 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 C -0.15 -2.31 6.79 -24.47 -0.17 -2.48 16 16 C 0.11 1.47 6.91 -2.42 -0.02 1.45 16 17 N -0.60 -8.61 3.07 -164.87 -0.51 -9.11 16 18 C 0.58 8.95 7.64 -12.46 -0.10 8.86 16 19 O -0.53 -9.26 15.44 -16.53 -0.26 -9.51 16 20 C -0.21 -3.00 5.36 -104.71 -0.56 -3.56 16 21 C -0.02 -0.30 6.06 -38.46 -0.23 -0.53 16 22 C -0.13 -1.55 5.74 -106.80 -0.61 -2.16 16 23 C -0.08 -0.74 9.77 -39.46 -0.39 -1.13 16 24 C -0.13 -1.04 9.96 -39.93 -0.40 -1.44 16 25 C -0.08 -0.66 9.94 -39.93 -0.40 -1.06 16 26 C -0.11 -1.07 9.97 -39.47 -0.39 -1.47 16 27 C 0.17 2.14 6.61 -84.78 -0.56 1.58 16 28 N -0.51 -7.16 10.33 -10.76 -0.11 -7.27 16 29 C 0.40 5.68 7.74 -16.60 -0.13 5.55 16 30 O -0.46 -6.34 11.63 -39.74 -0.46 -6.80 16 31 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16 32 H 0.07 0.82 4.26 -51.94 -0.22 0.60 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.36 7.20 5.40 -40.82 -0.22 6.98 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.19 2.20 2.24 -53.55 -0.12 2.08 16 41 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.41 3.88 9.06 45.56 0.41 4.29 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -32.59 361.22 -9.02 -41.61 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.65 Total: 12.60 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -4.28 Total: -0.63 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.10 Total: -58.12 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.72 Total: -16.32 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.71 Total: 15.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.59 -9.02 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986630916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.912 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds