Wall clock time and date at job start Wed Apr 1 2020 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.99992 * 2 1 4 4 C 1.54331 * 109.88231 * 238.90963 * 2 1 3 5 5 H 1.08994 * 110.71841 * 336.92556 * 4 2 1 6 6 N 1.46505 * 110.72165 * 100.02716 * 4 2 1 7 7 C 1.36933 * 119.99854 * 202.55810 * 6 4 2 8 8 H 1.08003 * 119.99963 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99765 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99751 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00349 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47243 * 270.00508 * 11 9 7 13 13 H 1.48498 * 109.46852 * 29.99838 * 11 9 7 14 14 H 1.48497 * 109.47140 * 149.99865 * 11 9 7 15 15 C 1.55155 * 103.09780 * 218.47426 * 4 2 1 16 16 C 1.55119 * 101.48650 * 35.28441 * 15 4 2 17 17 N 1.47019 * 109.88326 * 121.09901 * 2 1 3 18 18 C 1.34770 * 125.64818 * 298.32244 * 17 2 1 19 19 O 1.21591 * 120.00044 * 180.92672 * 18 17 2 20 20 C 1.47552 * 120.00171 * 0.92548 * 18 17 2 21 21 C 1.38909 * 120.29744 * 351.73425 * 20 18 17 22 22 C 1.40556 * 118.06620 * 179.78492 * 21 20 18 23 23 C 1.40544 * 121.12445 * 180.19102 * 22 21 20 24 24 C 1.36148 * 119.64105 * 180.28580 * 23 22 21 25 25 C 1.39328 * 120.82825 * 359.97438 * 24 23 22 26 26 C 1.36137 * 121.08085 * 0.02562 * 25 24 23 27 27 C 1.40530 * 119.82608 * 359.97438 * 26 25 24 28 28 N 1.33823 * 120.74826 * 179.97438 * 27 26 25 29 29 C 1.31374 * 121.66083 * 180.02562 * 28 27 26 30 30 O 1.35410 * 119.32138 * 180.02562 * 29 28 27 31 31 H 1.08998 * 109.47023 * 168.64062 * 1 2 3 32 32 H 1.08992 * 109.47416 * 288.64105 * 1 2 3 33 33 H 1.09003 * 109.47045 * 48.64309 * 1 2 3 34 34 H 0.97005 * 119.99706 * 22.55217 * 6 4 2 35 35 H 0.97003 * 120.00022 * 180.02562 * 10 9 7 36 36 H 1.09010 * 111.00342 * 153.48455 * 15 4 2 37 37 H 1.08998 * 111.01148 * 277.33731 * 15 4 2 38 38 H 1.09003 * 110.42048 * 204.28605 * 16 15 4 39 39 H 1.09003 * 110.20890 * 82.04263 * 16 15 4 40 40 H 1.07996 * 120.96994 * 0.02562 * 21 20 18 41 41 H 1.08003 * 120.17291 * 0.26240 * 23 22 21 42 42 H 1.08000 * 119.58212 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.45582 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.08640 * 179.97438 * 26 25 24 45 45 H 0.96700 * 114.00167 * 269.98388 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 1.3040 -1.4436 -1.6202 6 7 2.4555 0.1962 -2.2876 7 6 2.5063 -0.2087 -3.5947 8 1 2.2507 -1.2251 -3.8555 9 6 2.8854 0.6875 -4.5846 10 7 2.9338 0.2984 -5.8410 11 14 3.3255 2.4460 -4.1339 12 1 2.1049 3.2902 -4.1841 13 1 3.8933 2.4781 -2.7621 14 1 4.3282 2.9678 -5.0969 15 6 3.2870 -1.5176 -0.6959 16 6 2.8145 -1.8794 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.8085 -0.3614 2.4656 19 8 2.2874 -1.0197 3.3687 20 6 0.9849 0.8236 2.7729 21 6 0.5776 1.6770 1.7554 22 6 -0.2096 2.7892 2.1005 23 6 -0.6602 3.6919 1.1220 24 6 -1.4162 4.7625 1.4908 25 6 -1.7498 4.9748 2.8268 26 6 -1.3302 4.1206 3.8002 27 6 -0.5480 3.0037 3.4604 28 7 -0.1252 2.1524 4.4024 29 6 0.6072 1.1030 4.1050 30 8 1.0088 0.2722 5.0961 31 1 -0.3633 -1.0075 -0.2024 32 1 -0.3634 0.3285 0.9737 33 1 -0.3633 0.6790 -0.7714 34 1 2.6846 1.1093 -2.0534 35 1 3.1991 0.9245 -6.5328 36 1 3.4811 -2.4144 -1.2844 37 1 4.1664 -0.8744 -0.6652 38 1 3.6716 -2.0339 1.3921 39 1 2.1887 -2.7715 0.7126 40 1 0.8543 1.4893 0.7285 41 1 -0.4078 3.5373 0.0834 42 1 -1.7624 5.4553 0.7381 43 1 -2.3510 5.8311 3.0944 44 1 -1.5978 4.3008 4.8309 45 1 1.8585 0.5122 5.4903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986630916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:26 Heat of formation + Delta-G solvation = 26.136501 kcal Electronic energy + Delta-G solvation = -30157.674319 eV Core-core repulsion = 26141.895338 eV Total energy + Delta-G solvation = -4015.778981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.63184 -41.07197 -39.62593 -38.60248 -36.99929 -36.09743 -35.28115 -33.49819 -32.58807 -31.61136 -30.75760 -30.68246 -27.25726 -25.79187 -24.97650 -24.61023 -23.75771 -23.21872 -21.84775 -20.92539 -20.26027 -19.73855 -19.17277 -18.31408 -17.65400 -17.38777 -17.02184 -16.55228 -16.48274 -16.09665 -15.86838 -15.48565 -15.28596 -15.08797 -14.83021 -14.68347 -14.60870 -14.33066 -14.04750 -13.71914 -13.41476 -13.07662 -13.05259 -13.03145 -12.74481 -12.65991 -12.61632 -12.42942 -12.41425 -12.21365 -12.09307 -11.78707 -11.67273 -11.35951 -11.23805 -10.92636 -10.51823 -9.94204 -9.70117 -9.33119 -9.25656 -7.97797 -5.33679 -0.91552 -0.54805 0.77270 1.37234 1.42352 1.46140 1.53214 1.70817 2.06692 2.48025 2.52679 2.94747 3.06130 3.25318 3.33680 3.40688 3.48977 3.64452 3.72944 3.76425 3.88425 3.96993 4.15524 4.19839 4.27567 4.30086 4.30848 4.33771 4.50838 4.57770 4.62602 4.73544 4.82606 4.85695 4.87645 5.00967 5.08702 5.16385 5.23068 5.26826 5.34551 5.35495 5.45245 5.80590 5.81143 6.24164 6.29919 6.46750 6.72849 6.94599 7.09701 7.81801 8.01001 9.23062 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.004126 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.671836 B = 6785.194203 C = 8908.085185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 H 0.095 0.905 4 C 0.178 3.822 5 H 0.077 0.923 6 N -0.738 5.738 7 C -0.227 4.227 8 H 0.062 0.938 9 C -0.057 4.057 10 N -0.982 5.982 11 Si 0.946 3.054 12 H -0.270 1.270 13 H -0.250 1.250 14 H -0.305 1.305 15 C -0.147 4.147 16 C 0.112 3.888 17 N -0.603 5.603 18 C 0.580 3.420 19 O -0.556 6.556 20 C -0.233 4.233 21 C -0.012 4.012 22 C -0.142 4.142 23 C -0.087 4.087 24 C -0.119 4.119 25 C -0.066 4.066 26 C -0.125 4.125 27 C 0.148 3.852 28 N -0.525 5.525 29 C 0.382 3.618 30 O -0.477 6.477 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.367 0.633 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.197 0.803 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.167 0.833 44 H 0.145 0.855 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 9.545 17.784 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.005 3.995 3 H 0.112 0.888 4 C 0.069 3.931 5 H 0.095 0.905 6 N -0.381 5.381 7 C -0.358 4.358 8 H 0.080 0.920 9 C -0.249 4.249 10 N -0.633 5.633 11 Si 0.773 3.227 12 H -0.195 1.195 13 H -0.175 1.175 14 H -0.232 1.232 15 C -0.188 4.188 16 C -0.010 4.010 17 N -0.336 5.336 18 C 0.370 3.630 19 O -0.436 6.436 20 C -0.240 4.240 21 C -0.037 4.037 22 C -0.144 4.144 23 C -0.105 4.105 24 C -0.137 4.137 25 C -0.086 4.086 26 C -0.144 4.144 27 C 0.027 3.973 28 N -0.245 5.245 29 C 0.188 3.812 30 O -0.286 6.286 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.201 0.799 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.213 0.787 41 H 0.171 0.829 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.162 0.838 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -9.008 8.959 18.919 22.789 hybrid contribution 1.282 0.531 -0.763 1.583 sum -7.726 9.490 18.156 21.895 Atomic orbital electron populations 1.22828 0.93053 1.04737 1.03077 1.22279 0.95487 0.96479 0.85214 0.88813 1.21373 0.94856 0.90927 0.85948 0.90464 1.42575 1.82097 1.10469 1.02920 1.18939 1.37123 0.96775 0.82970 0.91963 1.25427 1.02316 1.02292 0.94886 1.69876 1.56186 1.36516 1.00680 0.85553 0.78084 0.80965 0.78056 1.19529 1.17492 1.23244 1.23443 0.99595 1.01796 0.93961 1.22330 0.95467 0.88033 0.95207 1.48396 1.51937 1.28943 1.04283 1.17610 0.80192 0.83957 0.81252 1.90756 1.52454 1.55105 1.45254 1.20833 1.07673 1.00317 0.95148 1.23891 0.88721 0.88989 1.02054 1.19020 1.02548 0.97875 0.94941 1.21415 0.96328 0.93398 0.99382 1.21405 0.97286 0.97706 0.97284 1.21445 0.96406 0.98565 0.92147 1.21036 0.98365 0.93111 1.01861 1.19146 0.95834 0.94118 0.88174 1.67548 1.14615 1.04375 1.37965 1.19234 0.90051 0.86033 0.85908 1.84627 1.43834 1.49050 1.51132 0.91023 0.91137 0.88680 0.79857 0.93430 0.89684 0.91407 0.90430 0.90261 0.78741 0.82897 0.81972 0.81521 0.83756 0.71974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 7.82 71.98 0.56 -3.41 16 2 C 0.11 2.78 2.47 45.34 0.11 2.89 16 3 H 0.09 2.26 5.78 -2.39 -0.01 2.24 16 4 C 0.18 5.54 3.12 46.18 0.14 5.68 16 5 H 0.08 2.48 7.64 -2.39 -0.02 2.46 16 6 N -0.74 -28.77 5.04 -317.32 -1.60 -30.37 16 7 C -0.23 -11.44 10.45 84.03 0.88 -10.56 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 9 C -0.06 -3.08 5.50 84.86 0.47 -2.62 16 10 N -0.98 -59.02 13.97 21.65 0.30 -58.72 16 11 Si 0.95 40.71 27.74 68.60 1.90 42.62 16 12 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 13 H -0.25 -9.53 6.52 99.48 0.65 -8.88 16 14 H -0.31 -13.89 7.11 99.48 0.71 -13.18 16 15 C -0.15 -4.26 6.79 32.06 0.22 -4.04 16 16 C 0.11 2.94 6.91 86.93 0.60 3.54 16 17 N -0.60 -16.52 3.07 -793.80 -2.43 -18.95 16 18 C 0.58 17.65 7.64 86.70 0.66 18.31 16 19 O -0.56 -19.63 15.44 16.86 0.26 -19.37 16 20 C -0.23 -6.42 5.36 -19.92 -0.11 -6.53 16 21 C -0.01 -0.28 6.06 23.00 0.14 -0.14 16 22 C -0.14 -3.06 5.74 -21.28 -0.12 -3.18 16 23 C -0.09 -1.37 9.77 22.35 0.22 -1.15 16 24 C -0.12 -1.39 9.96 22.05 0.22 -1.17 16 25 C -0.07 -0.76 9.94 22.04 0.22 -0.54 16 26 C -0.13 -2.19 9.97 22.34 0.22 -1.96 16 27 C 0.15 3.53 6.61 40.27 0.27 3.80 16 28 N -0.52 -14.68 10.33 -301.40 -3.11 -17.79 16 29 C 0.38 11.01 7.74 85.50 0.66 11.67 16 30 O -0.48 -13.44 11.63 -66.18 -0.77 -14.21 16 31 H 0.07 1.61 7.88 -2.39 -0.02 1.59 16 32 H 0.07 1.58 4.26 -2.40 -0.01 1.57 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.37 13.58 5.40 -92.70 -0.50 13.08 16 35 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.05 8.03 -2.39 -0.02 2.04 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.20 4.07 2.24 -3.91 -0.01 4.06 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.42 8.42 9.06 -74.06 -0.67 7.75 16 Total: -1.00 -72.07 361.22 -0.25 -72.32 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.16 Total: 33.89 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.36 Total: 10.59 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -6.84 Total: -125.83 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.51 Total: -33.58 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.90 Total: 42.62 kcal Total: -72.07 -0.25 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986630916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.456 kcal (2) G-P(sol) polarization free energy of solvation -72.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds