Wall clock time and date at job start Wed Apr 1 2020 00:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00016 * 2 1 4 4 C 1.54329 * 109.88419 * 121.10015 * 2 1 3 5 5 C 1.55157 * 102.94422 * 141.60754 * 4 2 1 6 6 H 1.09003 * 111.00212 * 206.42902 * 5 4 2 7 7 N 1.46500 * 111.00532 * 82.61050 * 5 4 2 8 8 C 1.36932 * 119.99817 * 155.00282 * 7 5 4 9 9 H 1.08002 * 120.00110 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99804 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00083 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99985 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46966 * 89.99722 * 12 10 8 14 14 H 1.48502 * 109.47109 * 210.00126 * 12 10 8 15 15 H 1.48500 * 109.47136 * 329.99885 * 12 10 8 16 16 C 1.55131 * 101.48344 * 324.33339 * 5 4 2 17 17 N 1.47023 * 109.88197 * 238.90562 * 2 1 3 18 18 C 1.34779 * 125.64712 * 61.60279 * 17 2 1 19 19 O 1.21636 * 119.99827 * 5.30933 * 18 17 2 20 20 C 1.47150 * 119.99928 * 185.30403 * 18 17 2 21 21 C 1.39034 * 121.09870 * 37.76354 * 20 18 17 22 22 N 1.32075 * 121.40199 * 179.97438 * 21 20 18 23 23 C 1.31824 * 123.60266 * 359.74288 * 22 21 20 24 24 O 1.35258 * 119.61251 * 180.30219 * 23 22 21 25 25 C 1.41179 * 120.77927 * 0.55280 * 23 22 21 26 26 C 1.40128 * 122.11521 * 179.73562 * 25 23 22 27 27 C 1.36353 * 119.50366 * 179.71970 * 26 25 23 28 28 C 1.39182 * 121.05882 * 359.97438 * 27 26 25 29 29 C 1.36510 * 120.89643 * 0.02562 * 28 27 26 30 30 C 1.39625 * 119.43110 * 0.02562 * 29 28 27 31 31 H 1.08997 * 109.47105 * 179.64426 * 1 2 3 32 32 H 1.09011 * 109.46657 * 299.64031 * 1 2 3 33 33 H 1.08998 * 109.46837 * 59.63381 * 1 2 3 34 34 H 1.08998 * 110.71557 * 259.97464 * 4 2 1 35 35 H 1.09004 * 110.71746 * 23.24229 * 4 2 1 36 36 H 0.97001 * 119.99817 * 335.00074 * 7 5 4 37 37 H 0.96998 * 119.99866 * 180.02562 * 11 10 8 38 38 H 1.09005 * 110.49392 * 278.45019 * 16 5 4 39 39 H 1.09001 * 110.34157 * 156.06172 * 16 5 4 40 40 H 1.08003 * 119.29655 * 0.02562 * 21 20 18 41 41 H 0.96692 * 114.00221 * 270.24579 * 24 23 22 42 42 H 1.07994 * 120.24769 * 359.74180 * 26 25 23 43 43 H 1.08001 * 119.47048 * 179.97438 * 27 26 25 44 44 H 1.08006 * 119.55442 * 180.02562 * 28 27 26 45 45 H 1.07991 * 120.28749 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 1.2427 5 6 3.2876 -1.5144 0.6923 6 1 3.4851 -2.4113 1.2795 7 7 4.4677 -0.6472 0.6501 8 6 5.7218 -1.1948 0.6994 9 1 5.8410 -2.2660 0.7698 10 6 6.8399 -0.3732 0.6600 11 7 6.6947 0.9322 0.5747 12 14 8.5508 -1.1201 0.7280 13 1 9.0205 -1.4075 -0.6510 14 1 9.4825 -0.1646 1.3794 15 1 8.5093 -2.3819 1.5099 16 6 2.8098 -1.8825 -0.7369 17 7 2.0300 -0.7140 -1.1839 18 6 1.8073 -0.3620 -2.4657 19 8 1.2242 0.6750 -2.7191 20 6 2.2697 -1.2321 -3.5587 21 6 2.2089 -2.6167 -3.4489 22 7 2.6218 -3.4033 -4.4263 23 6 3.1111 -2.9558 -5.5656 24 8 3.5048 -3.8349 -6.5152 25 6 3.2339 -1.5697 -5.8044 26 6 3.7550 -1.0635 -7.0026 27 6 3.8442 0.2856 -7.1791 28 6 3.4255 1.1687 -6.1882 29 6 2.9133 0.7081 -5.0096 30 6 2.8097 -0.6681 -4.7978 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3633 0.5083 0.8933 33 1 -0.3633 0.5195 -0.8867 34 1 2.3529 -0.0461 2.0200 35 1 1.3051 -1.4460 1.6182 36 1 4.3606 0.3148 0.5872 37 1 7.4760 1.5063 0.5468 38 1 2.1800 -2.7719 -0.7115 39 1 3.6654 -2.0412 -1.3934 40 1 1.8150 -3.0585 -2.5455 41 1 4.4311 -4.1025 -6.4435 42 1 4.0830 -1.7368 -7.7806 43 1 4.2463 0.6752 -8.1027 44 1 3.5069 2.2329 -6.3539 45 1 2.5918 1.4021 -4.2473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989521466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:42 Heat of formation + Delta-G solvation = 3.562308 kcal Electronic energy + Delta-G solvation = -30077.723168 eV Core-core repulsion = 26060.965297 eV Total energy + Delta-G solvation = -4016.757871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11816 -39.75307 -38.10165 -37.35386 -36.74035 -34.04530 -32.45658 -31.56706 -31.31711 -31.26952 -29.23301 -28.48764 -25.66779 -24.79577 -23.82301 -23.65536 -23.05173 -21.65345 -20.08800 -19.46619 -18.78432 -17.87278 -17.62828 -17.28684 -16.71926 -16.19620 -15.82705 -15.18929 -14.91616 -14.64665 -14.36046 -14.22241 -13.85168 -13.72396 -13.60979 -13.41615 -13.21488 -12.98583 -12.56331 -12.27791 -12.15422 -12.04855 -12.01957 -11.95243 -11.65650 -11.42158 -11.19176 -11.00677 -10.80522 -10.70807 -10.36300 -10.06915 -10.05077 -9.88989 -9.77057 -9.34855 -9.21362 -9.08792 -8.34098 -8.05700 -7.09298 -5.87180 -3.17785 0.00194 0.78681 1.60404 2.67472 3.02330 3.25793 3.36174 3.40452 3.41798 3.43538 3.93813 4.38696 4.43765 4.49227 4.57789 4.74042 4.82393 4.93149 5.05503 5.13035 5.16850 5.27053 5.31991 5.46187 5.51831 5.53902 5.58276 5.62583 5.73966 5.81466 5.84399 5.93873 5.98284 6.14179 6.15897 6.21369 6.32475 6.34796 6.37630 6.38894 6.53333 6.64567 6.72198 6.74741 7.23766 7.59828 7.74710 7.81330 8.29932 8.36639 9.41959 9.96659 10.31158 11.34656 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.004416 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.387542 B = 6338.928796 C = 7696.222834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.139 4.139 5 C 0.170 3.830 6 H 0.076 0.924 7 N -0.710 5.710 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.928 5.928 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.280 1.280 16 C 0.062 3.938 17 N -0.590 5.590 18 C 0.583 3.417 19 O -0.542 6.542 20 C -0.165 4.165 21 C 0.140 3.860 22 N -0.512 5.512 23 C 0.373 3.627 24 O -0.477 6.477 25 C -0.126 4.126 26 C -0.083 4.083 27 C -0.120 4.120 28 C -0.093 4.093 29 C -0.099 4.099 30 C 0.023 3.977 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.166 0.834 41 H 0.406 0.594 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 -4.880 -10.877 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.178 4.178 5 C 0.057 3.943 6 H 0.094 0.906 7 N -0.349 5.349 8 C -0.379 4.379 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.064 4.064 17 N -0.321 5.321 18 C 0.372 3.628 19 O -0.422 6.422 20 C -0.170 4.170 21 C -0.004 4.004 22 N -0.231 5.231 23 C 0.180 3.820 24 O -0.285 6.285 25 C -0.129 4.129 26 C -0.103 4.103 27 C -0.138 4.138 28 C -0.112 4.112 29 C -0.117 4.117 30 C 0.018 3.982 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.183 0.817 41 H 0.266 0.734 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.872 -5.225 -11.026 15.695 hybrid contribution 1.587 0.639 -0.101 1.714 sum -8.284 -4.586 -11.128 14.611 Atomic orbital electron populations 1.22136 0.95267 1.01840 1.02532 1.21522 0.93558 0.96911 0.84437 0.90523 1.23103 0.98284 1.00082 0.96337 1.21366 0.87061 0.94537 0.91350 0.90587 1.42326 1.00066 1.05492 1.87036 1.19233 0.83167 0.92026 1.43521 0.90940 1.24763 0.97939 0.95339 1.02381 1.69665 1.29085 1.02154 1.56566 0.86216 0.84518 0.78022 0.77568 1.21742 1.21685 1.20579 1.23664 0.94492 0.86733 1.01492 1.48324 1.51073 1.28560 1.04179 1.17256 0.79489 0.84889 0.81189 1.90736 1.43508 1.24531 1.83411 1.21858 1.04987 0.94993 0.95156 1.22605 0.93712 0.88330 0.95781 1.66576 1.13624 1.41966 1.00893 1.19344 0.91525 0.85362 0.85769 1.84602 1.33714 1.62844 1.47341 1.18835 1.04521 0.92987 0.96565 1.20871 0.97929 0.95916 0.95539 1.20962 1.00052 0.93248 0.99565 1.21130 0.96410 1.00466 0.93209 1.21256 0.97824 0.94173 0.98448 1.18732 0.94617 0.93810 0.91037 0.92741 0.91780 0.91735 0.89639 0.90625 0.77980 0.93358 0.92335 0.90137 0.81678 0.73444 0.84565 0.85354 0.85168 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.11 37.16 0.34 -1.78 16 2 C 0.14 2.16 3.43 -66.95 -0.23 1.93 16 3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.14 -2.03 6.07 -24.89 -0.15 -2.18 16 5 C 0.17 3.00 3.72 -65.66 -0.24 2.75 16 6 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 7 N -0.71 -16.55 5.25 -51.23 -0.27 -16.81 16 8 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 12 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.06 1.00 4.96 -2.41 -0.01 0.99 16 17 N -0.59 -9.86 3.06 -164.23 -0.50 -10.36 16 18 C 0.58 10.44 7.01 -12.64 -0.09 10.35 16 19 O -0.54 -10.70 14.16 5.25 0.07 -10.62 16 20 C -0.16 -2.74 5.54 -102.67 -0.57 -3.31 16 21 C 0.14 2.11 9.39 -17.15 -0.16 1.95 16 22 N -0.51 -7.72 10.25 -12.66 -0.13 -7.85 16 23 C 0.37 5.12 7.79 -16.44 -0.13 4.99 16 24 O -0.48 -5.07 12.80 -17.47 -0.22 -5.30 16 25 C -0.13 -1.76 5.75 -106.78 -0.61 -2.37 16 26 C -0.08 -0.93 9.58 -39.55 -0.38 -1.31 16 27 C -0.12 -1.28 9.95 -39.91 -0.40 -1.67 16 28 C -0.09 -1.14 9.96 -39.85 -0.40 -1.53 16 29 C -0.10 -1.53 9.27 -39.69 -0.37 -1.89 16 30 C 0.02 0.37 5.90 -104.77 -0.62 -0.24 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.06 0.96 7.06 -51.93 -0.37 0.60 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 36 H 0.39 9.88 7.86 -40.82 -0.32 9.56 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.06 0.76 7.00 -51.93 -0.36 0.40 16 39 H 0.08 1.49 7.30 -51.93 -0.38 1.11 16 40 H 0.17 2.17 5.91 -52.48 -0.31 1.86 16 41 H 0.41 2.34 9.06 45.56 0.41 2.75 16 42 H 0.14 1.15 7.66 -52.49 -0.40 0.75 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 45 H 0.15 2.49 6.14 -52.49 -0.32 2.17 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -33.12 371.09 -8.98 -42.11 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -4.96 Total: 13.39 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -4.26 Total: -0.27 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.18 Total: -61.57 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.15 Total: -15.92 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.12 -8.98 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989521466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.667 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds