Wall clock time and date at job start Wed Apr 1 2020 00:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00016 * 2 1 4 4 C 1.54329 * 109.88419 * 121.10015 * 2 1 3 5 5 C 1.55157 * 102.94422 * 141.60754 * 4 2 1 6 6 H 1.09003 * 111.00212 * 206.42902 * 5 4 2 7 7 N 1.46500 * 111.00532 * 82.61050 * 5 4 2 8 8 C 1.36932 * 119.99817 * 155.00282 * 7 5 4 9 9 H 1.08002 * 120.00110 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99804 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00083 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99985 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46966 * 89.99722 * 12 10 8 14 14 H 1.48502 * 109.47109 * 210.00126 * 12 10 8 15 15 H 1.48500 * 109.47136 * 329.99885 * 12 10 8 16 16 C 1.55131 * 101.48344 * 324.33339 * 5 4 2 17 17 N 1.47023 * 109.88197 * 238.90562 * 2 1 3 18 18 C 1.34779 * 125.64712 * 61.60279 * 17 2 1 19 19 O 1.21636 * 119.99827 * 5.30933 * 18 17 2 20 20 C 1.47150 * 119.99928 * 185.30403 * 18 17 2 21 21 C 1.39034 * 121.09870 * 37.76354 * 20 18 17 22 22 N 1.32075 * 121.40199 * 179.97438 * 21 20 18 23 23 C 1.31824 * 123.60266 * 359.74288 * 22 21 20 24 24 O 1.35258 * 119.61251 * 180.30219 * 23 22 21 25 25 C 1.41179 * 120.77927 * 0.55280 * 23 22 21 26 26 C 1.40128 * 122.11521 * 179.73562 * 25 23 22 27 27 C 1.36353 * 119.50366 * 179.71970 * 26 25 23 28 28 C 1.39182 * 121.05882 * 359.97438 * 27 26 25 29 29 C 1.36510 * 120.89643 * 0.02562 * 28 27 26 30 30 C 1.39625 * 119.43110 * 0.02562 * 29 28 27 31 31 H 1.08997 * 109.47105 * 179.64426 * 1 2 3 32 32 H 1.09011 * 109.46657 * 299.64031 * 1 2 3 33 33 H 1.08998 * 109.46837 * 59.63381 * 1 2 3 34 34 H 1.08998 * 110.71557 * 259.97464 * 4 2 1 35 35 H 1.09004 * 110.71746 * 23.24229 * 4 2 1 36 36 H 0.97001 * 119.99817 * 335.00074 * 7 5 4 37 37 H 0.96998 * 119.99866 * 180.02562 * 11 10 8 38 38 H 1.09005 * 110.49392 * 278.45019 * 16 5 4 39 39 H 1.09001 * 110.34157 * 156.06172 * 16 5 4 40 40 H 1.08003 * 119.29655 * 0.02562 * 21 20 18 41 41 H 0.96692 * 114.00221 * 270.24579 * 24 23 22 42 42 H 1.07994 * 120.24769 * 359.74180 * 26 25 23 43 43 H 1.08001 * 119.47048 * 179.97438 * 27 26 25 44 44 H 1.08006 * 119.55442 * 180.02562 * 28 27 26 45 45 H 1.07991 * 120.28749 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 1.2427 5 6 3.2876 -1.5144 0.6923 6 1 3.4851 -2.4113 1.2795 7 7 4.4677 -0.6472 0.6501 8 6 5.7218 -1.1948 0.6994 9 1 5.8410 -2.2660 0.7698 10 6 6.8399 -0.3732 0.6600 11 7 6.6947 0.9322 0.5747 12 14 8.5508 -1.1201 0.7280 13 1 9.0205 -1.4075 -0.6510 14 1 9.4825 -0.1646 1.3794 15 1 8.5093 -2.3819 1.5099 16 6 2.8098 -1.8825 -0.7369 17 7 2.0300 -0.7140 -1.1839 18 6 1.8073 -0.3620 -2.4657 19 8 1.2242 0.6750 -2.7191 20 6 2.2697 -1.2321 -3.5587 21 6 2.2089 -2.6167 -3.4489 22 7 2.6218 -3.4033 -4.4263 23 6 3.1111 -2.9558 -5.5656 24 8 3.5048 -3.8349 -6.5152 25 6 3.2339 -1.5697 -5.8044 26 6 3.7550 -1.0635 -7.0026 27 6 3.8442 0.2856 -7.1791 28 6 3.4255 1.1687 -6.1882 29 6 2.9133 0.7081 -5.0096 30 6 2.8097 -0.6681 -4.7978 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3633 0.5083 0.8933 33 1 -0.3633 0.5195 -0.8867 34 1 2.3529 -0.0461 2.0200 35 1 1.3051 -1.4460 1.6182 36 1 4.3606 0.3148 0.5872 37 1 7.4760 1.5063 0.5468 38 1 2.1800 -2.7719 -0.7115 39 1 3.6654 -2.0412 -1.3934 40 1 1.8150 -3.0585 -2.5455 41 1 4.4311 -4.1025 -6.4435 42 1 4.0830 -1.7368 -7.7806 43 1 4.2463 0.6752 -8.1027 44 1 3.5069 2.2329 -6.3539 45 1 2.5918 1.4021 -4.2473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989521466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:41 Heat of formation + Delta-G solvation = -21.511161 kcal Electronic energy + Delta-G solvation = -30078.810435 eV Core-core repulsion = 26060.965297 eV Total energy + Delta-G solvation = -4017.845138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.20917 -41.01436 -39.12641 -38.65335 -37.78029 -35.82878 -33.63416 -33.17202 -32.56557 -32.28682 -30.36778 -30.08985 -26.90549 -25.98301 -25.62096 -24.73591 -24.18041 -22.85734 -21.47631 -20.54124 -19.94775 -19.29711 -18.90978 -18.65741 -17.87821 -17.56395 -16.87222 -16.46272 -16.34863 -15.95984 -15.55968 -15.53020 -15.31062 -15.00659 -14.89125 -14.67308 -14.53474 -14.24370 -13.83123 -13.48385 -13.27619 -13.19531 -13.13377 -13.00698 -12.94139 -12.90539 -12.70355 -12.42143 -12.26014 -12.21468 -12.09779 -11.65451 -11.49135 -11.23869 -11.06173 -10.95730 -10.52283 -10.23083 -9.72797 -9.14880 -8.97897 -7.95175 -5.24105 -1.05841 -0.25043 0.55969 1.46430 1.46881 1.50576 1.55609 1.81260 2.09996 2.39188 2.54660 2.87281 3.25850 3.34775 3.37887 3.52475 3.67059 3.78338 3.82179 3.91434 3.95827 4.05632 4.12108 4.21304 4.34128 4.37056 4.44849 4.48608 4.57093 4.67695 4.73239 4.73933 4.90005 4.92997 4.98550 5.09975 5.17773 5.19744 5.24448 5.32362 5.34815 5.39390 5.49628 5.53706 5.77354 6.25792 6.45968 6.47294 6.69436 7.03281 7.32318 8.07297 8.29131 9.28251 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.004416 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.387542 B = 6338.928796 C = 7696.222834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.133 3.867 3 H 0.042 0.958 4 C -0.122 4.122 5 C 0.157 3.843 6 H 0.093 0.907 7 N -0.725 5.725 8 C -0.236 4.236 9 H 0.085 0.915 10 C -0.075 4.075 11 N -0.971 5.971 12 Si 0.967 3.033 13 H -0.293 1.293 14 H -0.300 1.300 15 H -0.263 1.263 16 C 0.074 3.926 17 N -0.592 5.592 18 C 0.579 3.421 19 O -0.574 6.574 20 C -0.201 4.201 21 C 0.150 3.850 22 N -0.533 5.533 23 C 0.388 3.612 24 O -0.472 6.472 25 C -0.144 4.144 26 C -0.071 4.071 27 C -0.119 4.119 28 C -0.081 4.081 29 C -0.141 4.141 30 C 0.002 3.998 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.181 0.819 41 H 0.430 0.570 42 H 0.172 0.828 43 H 0.170 0.830 44 H 0.153 0.847 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -7.510 -12.300 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.060 0.940 4 C -0.160 4.160 5 C 0.047 3.953 6 H 0.111 0.889 7 N -0.363 5.363 8 C -0.367 4.367 9 H 0.103 0.897 10 C -0.267 4.267 11 N -0.622 5.622 12 Si 0.797 3.203 13 H -0.221 1.221 14 H -0.227 1.227 15 H -0.187 1.187 16 C -0.052 4.052 17 N -0.323 5.323 18 C 0.368 3.632 19 O -0.456 6.456 20 C -0.206 4.206 21 C 0.006 3.994 22 N -0.253 5.253 23 C 0.195 3.805 24 O -0.283 6.283 25 C -0.147 4.147 26 C -0.090 4.090 27 C -0.136 4.136 28 C -0.099 4.099 29 C -0.159 4.159 30 C -0.003 4.003 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.135 0.865 36 H 0.201 0.799 37 H 0.057 0.943 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.197 0.803 41 H 0.294 0.706 42 H 0.190 0.810 43 H 0.188 0.812 44 H 0.170 0.830 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.950 -7.934 -12.439 17.796 hybrid contribution 1.579 1.411 0.198 2.127 sum -8.371 -6.523 -12.241 16.201 Atomic orbital electron populations 1.22032 0.93027 1.03009 1.02457 1.21606 0.95288 0.95355 0.84690 0.93962 1.23028 0.97575 1.00105 0.95313 1.21714 0.86336 0.94662 0.92633 0.88925 1.42526 1.01139 1.05340 1.87265 1.19681 0.84288 0.92490 1.40289 0.89740 1.25532 1.01563 0.95719 1.03929 1.69835 1.29302 1.03536 1.59500 0.85226 0.80250 0.77589 0.77252 1.22055 1.22668 1.18730 1.23530 0.94401 0.87913 0.99324 1.48416 1.50905 1.28789 1.04199 1.17576 0.79058 0.84728 0.81828 1.90699 1.44992 1.25944 1.83916 1.21836 1.07724 0.95578 0.95497 1.22762 0.92678 0.87669 0.96304 1.66671 1.15149 1.41867 1.01611 1.19504 0.89743 0.85759 0.85448 1.84552 1.35710 1.62025 1.46056 1.19071 1.05411 0.92956 0.97296 1.21340 0.95946 0.96879 0.94883 1.21408 0.99045 0.92814 1.00343 1.21506 0.94083 1.02204 0.92152 1.21156 1.01120 0.93936 0.99655 1.18985 0.95212 0.94481 0.91656 0.90789 0.89626 0.94056 0.90420 0.86488 0.79911 0.94294 0.88143 0.92740 0.80260 0.70635 0.81032 0.81206 0.82967 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.11 71.98 0.66 -3.13 16 2 C 0.13 4.22 3.43 45.34 0.16 4.37 16 3 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.12 -3.38 6.07 31.78 0.19 -3.18 16 5 C 0.16 5.37 3.72 46.46 0.17 5.55 16 6 H 0.09 2.90 8.09 -2.39 -0.02 2.88 16 7 N -0.72 -34.35 5.25 -316.01 -1.66 -36.00 16 8 C -0.24 -12.36 9.96 84.04 0.84 -11.53 16 9 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 10 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 11 N -0.97 -59.30 13.06 21.65 0.28 -59.01 16 12 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 13 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 14 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 16 C 0.07 2.31 4.96 86.93 0.43 2.74 16 17 N -0.59 -20.26 3.06 -791.74 -2.43 -22.69 16 18 C 0.58 21.94 7.01 86.58 0.61 22.54 16 19 O -0.57 -24.54 14.16 -4.15 -0.06 -24.60 16 20 C -0.20 -6.97 5.54 -18.60 -0.10 -7.07 16 21 C 0.15 4.50 9.39 84.85 0.80 5.30 16 22 N -0.53 -15.53 10.25 -307.29 -3.15 -18.68 16 23 C 0.39 10.00 7.79 85.42 0.67 10.67 16 24 O -0.47 -8.56 12.80 -85.41 -1.09 -9.65 16 25 C -0.14 -3.88 5.75 -21.26 -0.12 -4.00 16 26 C -0.07 -1.39 9.58 22.29 0.21 -1.17 16 27 C -0.12 -2.16 9.95 22.06 0.22 -1.94 16 28 C -0.08 -1.92 9.96 22.09 0.22 -1.70 16 29 C -0.14 -4.59 9.27 22.20 0.21 -4.38 16 30 C 0.00 0.06 5.90 -19.96 -0.12 -0.06 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.04 1.26 7.06 -2.39 -0.02 1.24 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.12 2.33 7.85 -2.38 -0.02 2.31 16 36 H 0.37 19.76 7.86 -92.71 -0.73 19.04 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 38 H 0.10 2.34 7.00 -2.38 -0.02 2.33 16 39 H 0.05 2.02 7.30 -2.39 -0.02 2.01 16 40 H 0.18 4.54 5.91 -2.91 -0.02 4.52 16 41 H 0.43 3.41 9.06 -74.06 -0.67 2.74 16 42 H 0.17 2.07 7.66 -2.91 -0.02 2.05 16 43 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.12 4.47 6.14 -2.92 -0.02 4.45 16 Total: -1.00 -76.95 371.09 -0.92 -77.87 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.34 Total: 36.32 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.50 Total: 9.25 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -6.95 Total: -136.39 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.15 Total: -34.25 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.95 -0.92 -77.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989521466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.361 kcal (2) G-P(sol) polarization free energy of solvation -76.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds