Wall clock time and date at job start Wed Apr 1 2020 00:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.99686 * 2 1 4 4 C 1.54333 * 109.98931 * 238.96582 * 2 1 3 5 5 C 1.55161 * 103.01921 * 218.66127 * 4 2 1 6 6 H 1.09005 * 111.03636 * 153.39079 * 5 4 2 7 7 N 1.46491 * 111.00344 * 277.23381 * 5 4 2 8 8 C 1.36944 * 119.99710 * 198.64746 * 7 5 4 9 9 H 1.07996 * 119.99919 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99793 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00134 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99992 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47679 * 89.99693 * 12 10 8 14 14 H 1.48510 * 109.46879 * 209.99961 * 12 10 8 15 15 H 1.48499 * 109.47184 * 329.99262 * 12 10 8 16 16 C 1.54918 * 101.57950 * 35.30768 * 5 4 2 17 17 N 1.47023 * 109.88246 * 121.09639 * 2 1 3 18 18 C 1.34772 * 125.64985 * 298.39060 * 17 2 1 19 19 O 1.21556 * 119.99962 * 3.35834 * 18 17 2 20 20 C 1.47861 * 120.00263 * 183.34900 * 18 17 2 21 21 C 1.39683 * 120.07424 * 153.00945 * 20 18 17 22 22 C 1.38055 * 120.14404 * 180.25841 * 21 20 18 23 23 C 1.38095 * 120.30050 * 359.49448 * 22 21 20 24 24 C 1.39644 * 120.14961 * 0.23669 * 23 22 21 25 25 C 1.47849 * 120.07525 * 180.02562 * 24 23 22 26 26 C 1.35753 * 126.58223 * 359.70051 * 25 24 23 27 27 N 1.34143 * 107.51617 * 179.90170 * 26 25 24 28 28 C 1.30360 * 108.90325 * 0.37598 * 27 26 25 29 29 O 1.34007 * 109.02852 * 359.76568 * 28 27 26 30 30 C 1.39316 * 120.07381 * 332.74493 * 20 18 17 31 31 H 1.09003 * 109.47172 * 300.35523 * 1 2 3 32 32 H 1.08995 * 109.47223 * 60.35900 * 1 2 3 33 33 H 1.09001 * 109.46823 * 180.36135 * 1 2 3 34 34 H 1.09000 * 110.85054 * 100.19420 * 4 2 1 35 35 H 1.08998 * 110.66734 * 337.04332 * 4 2 1 36 36 H 0.97000 * 120.00812 * 18.65139 * 7 5 4 37 37 H 0.96995 * 119.99910 * 179.97438 * 11 10 8 38 38 H 1.08997 * 110.36024 * 204.15054 * 16 5 4 39 39 H 1.09000 * 110.36543 * 81.83030 * 16 5 4 40 40 H 1.08000 * 119.92805 * 0.02562 * 21 20 18 41 41 H 1.07997 * 119.84855 * 179.77076 * 22 21 20 42 42 H 1.08007 * 119.92506 * 180.25004 * 23 22 21 43 43 H 1.07997 * 126.24855 * 0.04490 * 26 25 24 44 44 H 1.07999 * 125.48701 * 179.79056 * 28 27 26 45 45 H 1.07995 * 120.15002 * 0.02562 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2864 -1.5183 -0.6916 6 1 3.4814 -2.4155 -1.2790 7 7 4.4698 -0.6560 -0.6465 8 6 5.7188 -1.2114 -0.5634 9 1 5.8314 -2.2850 -0.5315 10 6 6.8403 -0.3944 -0.5212 11 7 8.0408 -0.9281 -0.4409 12 14 6.6456 1.4626 -0.5771 13 1 6.5167 1.9887 0.8056 14 1 7.8368 2.0658 -1.2272 15 1 5.4288 1.8096 -1.3542 16 6 2.8100 -1.8825 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8075 -0.3621 2.4657 19 8 1.0918 0.5870 2.7198 20 6 2.4337 -1.1305 3.5628 21 6 2.6972 -0.5134 4.7879 22 6 3.2867 -1.2280 5.8115 23 6 3.6102 -2.5590 5.6357 24 6 3.3472 -3.1898 4.4180 25 6 3.6937 -4.6150 4.2318 26 6 4.2737 -5.4328 5.1469 27 7 4.4120 -6.6403 4.5791 28 6 3.9503 -6.5895 3.3611 29 8 3.4993 -5.3517 3.1160 30 6 2.7571 -2.4730 3.3788 31 1 -0.3634 0.5193 0.8868 32 1 -0.3633 0.5082 -0.8931 33 1 -0.3633 -1.0277 0.0065 34 1 2.3596 -0.0449 -2.0192 35 1 1.3066 -1.4404 -1.6225 36 1 4.3689 0.3083 -0.6754 37 1 8.8244 -0.3572 -0.4118 38 1 3.6657 -2.0411 1.3931 39 1 2.1802 -2.7718 0.7114 40 1 2.4427 0.5261 4.9335 41 1 3.4917 -0.7451 6.7556 42 1 4.0675 -3.1133 6.4420 43 1 4.5679 -5.1617 6.1500 44 1 3.9337 -7.4127 2.6621 45 1 2.5520 -2.9559 2.4349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989633567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:12 Heat of formation + Delta-G solvation = 47.945828 kcal Electronic energy + Delta-G solvation = -30005.454700 eV Core-core repulsion = 25990.621443 eV Total energy + Delta-G solvation = -4014.833257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.37230 -40.48500 -38.78253 -37.37719 -34.88254 -34.18345 -32.79443 -32.49676 -31.55448 -30.39474 -29.05670 -28.74362 -25.87243 -24.55610 -23.75347 -23.42063 -22.66897 -21.78463 -21.13976 -20.15677 -19.25216 -17.89153 -17.74795 -17.00657 -16.66097 -16.47052 -16.31864 -15.68980 -15.01606 -14.70537 -14.56978 -14.17846 -14.08956 -13.99582 -13.86801 -13.40077 -13.26819 -13.03272 -12.90950 -12.70835 -12.38131 -12.08361 -12.04008 -11.80960 -11.60301 -11.50761 -11.45115 -11.03965 -10.83052 -10.74066 -10.68864 -10.43657 -10.13750 -10.04242 -9.73427 -9.69090 -9.14646 -9.05461 -8.44539 -8.20797 -7.39266 -5.87497 -3.24718 0.47172 0.93450 1.79463 2.54536 2.58100 2.94421 3.14319 3.30886 3.35002 3.40109 3.78901 4.08615 4.34616 4.50313 4.56652 4.69347 4.83145 4.86770 4.93819 5.00192 5.07559 5.12708 5.18341 5.25519 5.40785 5.44918 5.51220 5.54667 5.62409 5.70422 5.75842 5.76568 5.82644 5.94442 6.03513 6.13859 6.16933 6.18495 6.23010 6.24567 6.28682 6.40101 6.48725 6.60083 6.68428 7.54255 7.71996 7.86119 8.29952 8.31868 9.07997 9.80791 9.98886 11.30062 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.004596 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.671516 B = 6090.943625 C = 7276.719432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.072 0.928 4 C -0.140 4.140 5 C 0.174 3.826 6 H 0.081 0.919 7 N -0.736 5.736 8 C -0.251 4.251 9 H 0.092 0.908 10 C 0.012 3.988 11 N -0.928 5.928 12 Si 0.880 3.120 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.060 3.940 17 N -0.593 5.593 18 C 0.574 3.426 19 O -0.546 6.546 20 C -0.118 4.118 21 C -0.053 4.053 22 C -0.123 4.123 23 C -0.074 4.074 24 C -0.027 4.027 25 C 0.007 3.993 26 C -0.026 4.026 27 N -0.488 5.488 28 C 0.175 3.825 29 O -0.195 6.195 30 C -0.072 4.072 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.185 0.815 44 H 0.252 0.748 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 -6.324 8.238 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.179 4.179 5 C 0.063 3.937 6 H 0.098 0.902 7 N -0.377 5.377 8 C -0.381 4.381 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.575 5.575 12 Si 0.711 3.289 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.066 4.066 17 N -0.325 5.325 18 C 0.363 3.637 19 O -0.426 6.426 20 C -0.121 4.121 21 C -0.072 4.072 22 C -0.141 4.141 23 C -0.093 4.093 24 C -0.027 4.027 25 C -0.046 4.046 26 C -0.166 4.166 27 N -0.216 5.216 28 C -0.050 4.050 29 O -0.081 6.081 30 C -0.090 4.090 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.196 0.804 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.202 0.798 44 H 0.267 0.733 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.480 -6.486 8.638 17.274 hybrid contribution -0.035 1.778 -0.339 1.810 sum -13.515 -4.708 8.299 16.544 Atomic orbital electron populations 1.22138 0.94966 1.02020 1.02669 1.21533 0.94006 0.96504 0.84597 0.90943 1.23089 0.98319 1.00174 0.96324 1.21312 0.86151 0.94506 0.91772 0.90161 1.42682 1.01974 1.03975 1.89086 1.19017 0.81426 0.93847 1.43790 0.88997 1.24646 0.95105 0.97246 1.01456 1.69691 0.97073 1.34206 1.56487 0.86622 0.76996 0.87388 0.77940 1.21050 1.21571 1.20300 1.23732 0.94894 0.86841 1.01125 1.48335 1.51325 1.28450 1.04385 1.17832 0.80779 0.83646 0.81449 1.90729 1.38907 1.29489 1.83453 1.19809 1.03005 0.94189 0.95118 1.21359 0.94275 1.00524 0.91034 1.20985 0.99819 0.93734 0.99552 1.21177 0.97698 0.94902 0.95493 1.17480 1.02642 0.87403 0.95207 1.21376 1.04813 0.92883 0.85560 1.23248 1.03374 0.88481 1.01487 1.70340 1.19860 1.24099 1.07291 1.28143 0.96326 0.85594 0.94948 1.84498 1.63821 1.22482 1.37273 1.22032 0.94623 0.93477 0.98886 0.91315 0.91902 0.92669 0.89733 0.90144 0.80394 0.92919 0.89003 0.91958 0.84566 0.84540 0.84953 0.79765 0.73262 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.11 37.16 0.34 -1.72 16 2 C 0.14 2.04 3.47 -66.95 -0.23 1.81 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.14 -1.93 6.05 -24.89 -0.15 -2.08 16 5 C 0.17 2.97 3.69 -65.78 -0.24 2.73 16 6 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 7 N -0.74 -16.21 5.07 -51.35 -0.26 -16.47 16 8 C -0.25 -6.67 10.47 -15.05 -0.16 -6.83 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 11 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 12 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 13 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 16 C 0.06 0.94 4.71 -2.53 -0.01 0.93 16 17 N -0.59 -9.67 3.06 -164.10 -0.50 -10.18 16 18 C 0.57 9.94 7.46 -12.32 -0.09 9.85 16 19 O -0.55 -10.52 15.56 5.32 0.08 -10.44 16 20 C -0.12 -1.83 5.70 -105.02 -0.60 -2.42 16 21 C -0.05 -0.72 9.59 -39.11 -0.37 -1.09 16 22 C -0.12 -1.34 10.02 -39.70 -0.40 -1.73 16 23 C -0.07 -0.81 9.57 -39.11 -0.37 -1.19 16 24 C -0.03 -0.35 5.87 -105.03 -0.62 -0.97 16 25 C 0.01 0.09 7.07 -36.54 -0.26 -0.17 16 26 C -0.03 -0.32 11.29 -17.43 -0.20 -0.51 16 27 N -0.49 -6.16 11.27 -14.68 -0.17 -6.33 16 28 C 0.18 1.85 13.22 52.14 0.69 2.54 16 29 O -0.19 -2.49 10.58 4.23 0.04 -2.45 16 30 C -0.07 -1.03 7.61 -38.77 -0.30 -1.33 16 31 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 0.90 7.85 -51.93 -0.41 0.50 16 36 H 0.36 8.16 5.68 -40.82 -0.23 7.92 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.09 1.67 6.17 -51.93 -0.32 1.35 16 39 H 0.06 0.82 7.29 -51.93 -0.38 0.45 16 40 H 0.14 1.76 7.87 -52.49 -0.41 1.35 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.13 1.04 7.03 -52.48 -0.37 0.67 16 43 H 0.19 1.65 7.29 -52.49 -0.38 1.27 16 44 H 0.25 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.15 2.08 4.44 -52.49 -0.23 1.84 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -34.51 371.93 -7.84 -42.35 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.64 Total: 10.26 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.07 Total: -1.94 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.15 Total: -60.52 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.13 Total: -12.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.51 -7.84 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989633567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.291 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds