Wall clock time and date at job start Wed Apr 1 2020 00:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.99686 * 2 1 4 4 C 1.54333 * 109.98931 * 238.96582 * 2 1 3 5 5 C 1.55161 * 103.01921 * 218.66127 * 4 2 1 6 6 H 1.09005 * 111.03636 * 153.39079 * 5 4 2 7 7 N 1.46491 * 111.00344 * 277.23381 * 5 4 2 8 8 C 1.36944 * 119.99710 * 198.64746 * 7 5 4 9 9 H 1.07996 * 119.99919 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99793 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00134 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99992 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47679 * 89.99693 * 12 10 8 14 14 H 1.48510 * 109.46879 * 209.99961 * 12 10 8 15 15 H 1.48499 * 109.47184 * 329.99262 * 12 10 8 16 16 C 1.54918 * 101.57950 * 35.30768 * 5 4 2 17 17 N 1.47023 * 109.88246 * 121.09639 * 2 1 3 18 18 C 1.34772 * 125.64985 * 298.39060 * 17 2 1 19 19 O 1.21556 * 119.99962 * 3.35834 * 18 17 2 20 20 C 1.47861 * 120.00263 * 183.34900 * 18 17 2 21 21 C 1.39683 * 120.07424 * 153.00945 * 20 18 17 22 22 C 1.38055 * 120.14404 * 180.25841 * 21 20 18 23 23 C 1.38095 * 120.30050 * 359.49448 * 22 21 20 24 24 C 1.39644 * 120.14961 * 0.23669 * 23 22 21 25 25 C 1.47849 * 120.07525 * 180.02562 * 24 23 22 26 26 C 1.35753 * 126.58223 * 359.70051 * 25 24 23 27 27 N 1.34143 * 107.51617 * 179.90170 * 26 25 24 28 28 C 1.30360 * 108.90325 * 0.37598 * 27 26 25 29 29 O 1.34007 * 109.02852 * 359.76568 * 28 27 26 30 30 C 1.39316 * 120.07381 * 332.74493 * 20 18 17 31 31 H 1.09003 * 109.47172 * 300.35523 * 1 2 3 32 32 H 1.08995 * 109.47223 * 60.35900 * 1 2 3 33 33 H 1.09001 * 109.46823 * 180.36135 * 1 2 3 34 34 H 1.09000 * 110.85054 * 100.19420 * 4 2 1 35 35 H 1.08998 * 110.66734 * 337.04332 * 4 2 1 36 36 H 0.97000 * 120.00812 * 18.65139 * 7 5 4 37 37 H 0.96995 * 119.99910 * 179.97438 * 11 10 8 38 38 H 1.08997 * 110.36024 * 204.15054 * 16 5 4 39 39 H 1.09000 * 110.36543 * 81.83030 * 16 5 4 40 40 H 1.08000 * 119.92805 * 0.02562 * 21 20 18 41 41 H 1.07997 * 119.84855 * 179.77076 * 22 21 20 42 42 H 1.08007 * 119.92506 * 180.25004 * 23 22 21 43 43 H 1.07997 * 126.24855 * 0.04490 * 26 25 24 44 44 H 1.07999 * 125.48701 * 179.79056 * 28 27 26 45 45 H 1.07995 * 120.15002 * 0.02562 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2864 -1.5183 -0.6916 6 1 3.4814 -2.4155 -1.2790 7 7 4.4698 -0.6560 -0.6465 8 6 5.7188 -1.2114 -0.5634 9 1 5.8314 -2.2850 -0.5315 10 6 6.8403 -0.3944 -0.5212 11 7 8.0408 -0.9281 -0.4409 12 14 6.6456 1.4626 -0.5771 13 1 6.5167 1.9887 0.8056 14 1 7.8368 2.0658 -1.2272 15 1 5.4288 1.8096 -1.3542 16 6 2.8100 -1.8825 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8075 -0.3621 2.4657 19 8 1.0918 0.5870 2.7198 20 6 2.4337 -1.1305 3.5628 21 6 2.6972 -0.5134 4.7879 22 6 3.2867 -1.2280 5.8115 23 6 3.6102 -2.5590 5.6357 24 6 3.3472 -3.1898 4.4180 25 6 3.6937 -4.6150 4.2318 26 6 4.2737 -5.4328 5.1469 27 7 4.4120 -6.6403 4.5791 28 6 3.9503 -6.5895 3.3611 29 8 3.4993 -5.3517 3.1160 30 6 2.7571 -2.4730 3.3788 31 1 -0.3634 0.5193 0.8868 32 1 -0.3633 0.5082 -0.8931 33 1 -0.3633 -1.0277 0.0065 34 1 2.3596 -0.0449 -2.0192 35 1 1.3066 -1.4404 -1.6225 36 1 4.3689 0.3083 -0.6754 37 1 8.8244 -0.3572 -0.4118 38 1 3.6657 -2.0411 1.3931 39 1 2.1802 -2.7718 0.7114 40 1 2.4427 0.5261 4.9335 41 1 3.4917 -0.7451 6.7556 42 1 4.0675 -3.1133 6.4420 43 1 4.5679 -5.1617 6.1500 44 1 3.9337 -7.4127 2.6621 45 1 2.5520 -2.9559 2.4349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989633567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:11 Heat of formation + Delta-G solvation = 23.489243 kcal Electronic energy + Delta-G solvation = -30006.515217 eV Core-core repulsion = 25990.621443 eV Total energy + Delta-G solvation = -4015.893774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.26360 -41.70040 -39.85606 -38.71554 -35.95523 -35.79247 -33.88018 -33.57308 -33.35885 -31.45458 -30.64691 -29.66786 -27.05335 -25.76852 -25.24226 -24.60107 -23.72853 -22.74206 -22.32779 -21.45212 -20.42025 -19.74483 -18.84416 -18.16551 -17.71741 -17.57630 -17.34247 -16.82204 -16.48615 -16.04601 -15.79449 -15.66642 -15.32720 -14.99380 -14.94795 -14.72578 -14.54812 -14.25267 -14.16753 -13.91603 -13.64588 -13.60197 -13.24394 -13.04432 -12.84709 -12.73057 -12.58055 -12.43079 -12.29673 -12.02541 -11.98674 -11.81738 -11.67020 -11.57112 -11.15772 -11.00697 -10.92721 -10.08801 -9.81815 -9.28028 -9.14871 -8.04886 -5.37394 -0.47707 -0.08704 0.87197 1.31990 1.34968 1.40623 1.61767 1.71110 1.79509 1.96090 2.43695 2.75241 3.22403 3.25899 3.36972 3.48836 3.57755 3.71798 3.76859 3.85645 4.00398 4.03365 4.07216 4.14965 4.26660 4.31439 4.40000 4.47350 4.56386 4.65784 4.67096 4.72683 4.81830 4.86552 4.88681 5.02521 5.11389 5.12357 5.20358 5.26577 5.28099 5.31155 5.34736 5.45724 5.71887 5.76267 6.19338 6.42596 6.66652 7.01254 7.04775 7.80945 7.97354 9.16097 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.004596 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.671516 B = 6090.943625 C = 7276.719432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.128 3.872 3 H 0.053 0.947 4 C -0.123 4.123 5 C 0.161 3.839 6 H 0.089 0.911 7 N -0.741 5.741 8 C -0.221 4.221 9 H 0.068 0.932 10 C -0.055 4.055 11 N -0.978 5.978 12 Si 0.939 3.061 13 H -0.292 1.292 14 H -0.295 1.295 15 H -0.253 1.253 16 C 0.072 3.928 17 N -0.596 5.596 18 C 0.566 3.434 19 O -0.575 6.575 20 C -0.145 4.145 21 C -0.069 4.069 22 C -0.113 4.113 23 C -0.068 4.068 24 C -0.036 4.036 25 C -0.021 4.021 26 C -0.022 4.022 27 N -0.519 5.519 28 C 0.186 3.814 29 O -0.211 6.211 30 C -0.084 4.084 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.362 0.638 37 H 0.256 0.744 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.174 0.826 42 H 0.169 0.831 43 H 0.211 0.789 44 H 0.293 0.707 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.056 -7.028 8.582 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 H 0.071 0.929 4 C -0.161 4.161 5 C 0.051 3.949 6 H 0.107 0.893 7 N -0.383 5.383 8 C -0.352 4.352 9 H 0.086 0.914 10 C -0.247 4.247 11 N -0.629 5.629 12 Si 0.768 3.232 13 H -0.219 1.219 14 H -0.222 1.222 15 H -0.177 1.177 16 C -0.053 4.053 17 N -0.327 5.327 18 C 0.357 3.643 19 O -0.457 6.457 20 C -0.148 4.148 21 C -0.088 4.088 22 C -0.130 4.130 23 C -0.086 4.086 24 C -0.036 4.036 25 C -0.073 4.073 26 C -0.161 4.161 27 N -0.247 5.247 28 C -0.038 4.038 29 O -0.098 6.098 30 C -0.103 4.103 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.135 0.865 36 H 0.194 0.806 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.152 0.848 41 H 0.191 0.809 42 H 0.186 0.814 43 H 0.228 0.772 44 H 0.308 0.692 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.046 -7.204 8.965 18.938 hybrid contribution 0.383 1.813 -0.405 1.897 sum -14.663 -5.391 8.560 17.814 Atomic orbital electron populations 1.22038 0.93085 1.02802 1.02727 1.21705 0.95524 0.95601 0.84617 0.92914 1.23045 0.97146 1.00314 0.95602 1.21636 0.85732 0.94686 0.92833 0.89292 1.42716 1.01961 1.04431 1.89159 1.19008 0.83180 0.92767 1.40258 0.91422 1.25307 0.94980 1.01354 1.03044 1.69844 0.97865 1.35517 1.59645 0.85655 0.77532 0.82489 0.77564 1.21922 1.22165 1.17715 1.23558 0.94618 0.87875 0.99246 1.48444 1.51072 1.28556 1.04627 1.18230 0.80487 0.83480 0.82152 1.90694 1.40265 1.30829 1.83945 1.19843 1.04745 0.94746 0.95468 1.21547 0.95151 1.00848 0.91291 1.21391 0.97948 0.93637 1.00048 1.21632 0.96390 0.95025 0.95507 1.17718 1.02421 0.87749 0.95746 1.21494 1.06575 0.93117 0.86146 1.23703 1.02050 0.88023 1.02285 1.70386 1.21315 1.24568 1.08388 1.29205 0.93909 0.85612 0.95073 1.84495 1.64312 1.23334 1.37674 1.21983 0.95628 0.93249 0.99410 0.93640 0.89457 0.91424 0.89306 0.86485 0.80558 0.93487 0.91683 0.88888 0.84779 0.80896 0.81404 0.77239 0.69160 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.11 71.98 0.66 -2.87 16 2 C 0.13 3.66 3.47 45.34 0.16 3.81 16 3 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.12 -3.04 6.05 31.79 0.19 -2.85 16 5 C 0.16 5.23 3.69 46.39 0.17 5.40 16 6 H 0.09 2.78 8.13 -2.38 -0.02 2.77 16 7 N -0.74 -32.15 5.07 -316.36 -1.60 -33.76 16 8 C -0.22 -11.86 10.47 84.03 0.88 -10.99 16 9 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 10 C -0.05 -3.16 5.50 84.86 0.47 -2.69 16 11 N -0.98 -61.40 13.97 21.65 0.30 -61.10 16 12 Si 0.94 45.67 27.74 68.60 1.90 47.57 16 13 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 14 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 15 H -0.25 -11.09 6.52 99.48 0.65 -10.44 16 16 C 0.07 2.23 4.71 86.86 0.41 2.64 16 17 N -0.60 -19.23 3.06 -791.37 -2.42 -21.65 16 18 C 0.57 19.99 7.46 86.79 0.65 20.64 16 19 O -0.58 -22.77 15.56 -3.89 -0.06 -22.83 16 20 C -0.15 -4.56 5.70 -20.12 -0.11 -4.68 16 21 C -0.07 -1.87 9.59 22.58 0.22 -1.65 16 22 C -0.11 -2.23 10.02 22.19 0.22 -2.01 16 23 C -0.07 -1.33 9.57 22.58 0.22 -1.12 16 24 C -0.04 -0.91 5.87 -20.13 -0.12 -1.03 16 25 C -0.02 -0.52 7.07 24.24 0.17 -0.35 16 26 C -0.02 -0.48 11.29 83.76 0.95 0.46 16 27 N -0.52 -12.24 11.27 -315.09 -3.55 -15.79 16 28 C 0.19 3.62 13.22 130.46 1.72 5.35 16 29 O -0.21 -5.24 10.58 -7.80 -0.08 -5.32 16 30 C -0.08 -2.45 7.61 22.80 0.17 -2.28 16 31 H 0.04 1.31 6.77 -2.39 -0.02 1.29 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 35 H 0.12 2.10 7.85 -2.39 -0.02 2.09 16 36 H 0.36 15.86 5.68 -92.71 -0.53 15.33 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.06 2.40 6.17 -2.39 -0.01 2.39 16 39 H 0.09 2.32 7.29 -2.39 -0.02 2.30 16 40 H 0.13 3.54 7.87 -2.91 -0.02 3.52 16 41 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.17 2.02 7.03 -2.91 -0.02 2.00 16 43 H 0.21 3.19 7.29 -2.91 -0.02 3.17 16 44 H 0.29 2.39 8.06 -2.91 -0.02 2.36 16 45 H 0.14 4.08 4.44 -2.91 -0.01 4.06 16 Total: -1.00 -78.20 371.93 1.95 -76.25 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.45 Total: 30.84 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 7.02 Total: 5.80 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -7.28 Total: -132.30 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.14 Total: -28.15 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.57 kcal Total: -78.20 1.95 -76.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989633567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.735 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds