Wall clock time and date at job start Wed Apr 1 2020 00:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34783 * 125.64363 * 204.09303 * 5 4 2 7 7 O 1.21543 * 120.00106 * 0.02562 * 6 5 4 8 8 C 1.47927 * 119.99614 * 180.02562 * 6 5 4 9 9 C 1.38253 * 119.24099 * 180.02562 * 8 6 5 10 10 C 1.40695 * 118.65526 * 179.97438 * 9 8 6 11 11 C 1.40236 * 122.06038 * 180.02562 * 10 9 8 12 12 C 1.36309 * 119.48173 * 179.97438 * 11 10 9 13 13 C 1.39248 * 120.94534 * 359.97438 * 12 11 10 14 14 C 1.36368 * 121.05961 * 359.97438 * 13 12 11 15 15 C 1.40042 * 119.58664 * 0.02562 * 14 13 12 16 16 C 1.41351 * 121.85236 * 180.02562 * 15 14 13 17 17 O 1.35493 * 119.95048 * 0.02562 * 16 15 14 18 18 N 1.31383 * 120.09453 * 179.72193 * 16 15 14 19 19 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 20 20 C 1.54324 * 107.27321 * 358.94388 * 19 5 4 21 21 H 1.08995 * 110.72617 * 96.34448 * 20 19 5 22 22 N 1.46499 * 110.72129 * 219.44397 * 20 19 5 23 23 C 1.36931 * 120.00122 * 273.54344 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 32 32 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 33 33 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 34 34 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 35 35 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 36 36 H 1.08007 * 120.67557 * 359.97438 * 9 8 6 37 37 H 1.08000 * 120.25568 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.53064 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.47416 * 180.02562 * 13 12 11 40 40 H 1.07993 * 120.20315 * 180.02562 * 14 13 12 41 41 H 0.96699 * 114.00681 * 89.99843 * 17 16 15 42 42 H 1.09000 * 109.88283 * 239.52716 * 19 5 4 43 43 H 1.09004 * 110.01221 * 118.43143 * 19 5 4 44 44 H 0.97001 * 119.99790 * 93.53861 * 22 20 19 45 45 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4478 -1.5615 -1.5938 7 8 4.3007 -1.4997 -2.7987 8 6 5.7469 -1.9863 -1.0280 9 6 6.7833 -2.3089 -1.8842 10 6 8.0137 -2.7109 -1.3328 11 6 9.1122 -3.0535 -2.1344 12 6 10.2801 -3.4354 -1.5443 13 6 10.3976 -3.4893 -0.1579 14 6 9.3493 -3.1617 0.6504 15 6 8.1337 -2.7648 0.0794 16 6 7.0167 -2.4144 0.8715 17 8 7.1056 -2.4571 2.2229 18 7 5.8942 -2.0417 0.2994 19 6 3.4675 -1.2739 0.6962 20 6 2.0862 -0.8078 1.2024 21 1 1.4479 -1.6630 1.4241 22 7 2.2286 0.0498 2.3816 23 6 2.3033 -0.5088 3.6295 24 1 2.2576 -1.5817 3.7445 25 6 2.4377 0.3038 4.7469 26 7 2.4938 1.6113 4.6067 27 14 2.5474 -0.4588 6.4485 28 1 1.1836 -0.5885 7.0217 29 1 3.1726 -1.8021 6.3497 30 1 3.3732 0.4080 7.3272 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3632 -1.0253 -0.0699 34 1 2.1560 -0.1721 -2.0837 35 1 1.4526 -1.6705 -1.4041 36 1 6.6512 -2.2535 -2.9548 37 1 9.0334 -3.0152 -3.2109 38 1 11.1265 -3.6998 -2.1609 39 1 11.3343 -3.7948 0.2845 40 1 9.4559 -3.2081 1.7240 41 1 7.4015 -1.6286 2.6241 42 1 4.2426 -0.5994 1.0601 43 1 3.6663 -2.2881 1.0427 44 1 2.2700 1.0134 2.2783 45 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054734731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:58 Heat of formation + Delta-G solvation = 6.234947 kcal Electronic energy + Delta-G solvation = -29470.471383 eV Core-core repulsion = 25453.829406 eV Total energy + Delta-G solvation = -4016.641977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26403 -39.68523 -38.04135 -37.66570 -36.53828 -34.03600 -32.68313 -32.32533 -31.36442 -30.62745 -29.68224 -27.41748 -26.59967 -24.41360 -24.21823 -23.72970 -22.32709 -21.57798 -20.11708 -19.88247 -18.45502 -18.06707 -17.69685 -17.05619 -16.44939 -16.13058 -15.80068 -15.52122 -15.20350 -14.70623 -14.48356 -14.24132 -14.00889 -13.67473 -13.48998 -13.40948 -13.10111 -12.98682 -12.56179 -12.43244 -12.20902 -12.10995 -11.95912 -11.77109 -11.49171 -11.43172 -11.09178 -10.97008 -10.72374 -10.56274 -10.31048 -10.22066 -10.14981 -9.85935 -9.67984 -9.40416 -9.37537 -8.87408 -8.39142 -8.08754 -7.00996 -5.79131 -3.08635 -0.01831 0.47641 1.56510 2.34613 3.11810 3.22606 3.41541 3.42789 3.48881 3.50386 3.88254 4.25376 4.34340 4.48132 4.54853 4.59242 4.78734 4.87368 4.90948 5.07443 5.20953 5.25064 5.28079 5.44287 5.49545 5.62333 5.63274 5.65534 5.72662 5.83884 5.95738 5.99318 6.04286 6.07729 6.09079 6.21037 6.29346 6.35349 6.47819 6.54077 6.64432 6.68395 6.76706 7.04606 7.37900 7.67740 7.70353 7.82480 8.31829 8.38756 9.50535 10.04980 10.40381 11.43044 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010227 B = 0.003753 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.249763 B = 7458.731375 C = 9931.419825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.083 0.917 4 C 0.112 3.888 5 N -0.591 5.591 6 C 0.578 3.422 7 O -0.551 6.551 8 C 0.090 3.910 9 C -0.102 4.102 10 C -0.022 4.022 11 C -0.106 4.106 12 C -0.099 4.099 13 C -0.119 4.119 14 C -0.080 4.080 15 C -0.110 4.110 16 C 0.356 3.644 17 O -0.470 6.470 18 N -0.468 5.468 19 C 0.094 3.906 20 C 0.171 3.829 21 H 0.063 0.937 22 N -0.710 5.710 23 C -0.239 4.239 24 H 0.072 0.928 25 C -0.010 4.010 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.281 1.281 30 H -0.292 1.292 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.408 0.592 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.386 0.614 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.345 -8.269 -12.587 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.102 0.898 4 C -0.010 4.010 5 N -0.321 5.321 6 C 0.366 3.634 7 O -0.431 6.431 8 C -0.036 4.036 9 C -0.123 4.123 10 C -0.027 4.027 11 C -0.124 4.124 12 C -0.118 4.118 13 C -0.137 4.137 14 C -0.099 4.099 15 C -0.113 4.113 16 C 0.161 3.839 17 O -0.278 6.278 18 N -0.189 5.189 19 C -0.032 4.032 20 C 0.059 3.941 21 H 0.081 0.919 22 N -0.350 5.350 23 C -0.370 4.370 24 H 0.090 0.910 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.206 1.206 30 H -0.219 1.219 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.172 0.828 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.268 0.732 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.344 -8.654 -12.674 19.696 hybrid contribution 1.061 0.141 0.776 1.322 sum 13.405 -8.513 -11.898 19.843 Atomic orbital electron populations 1.21609 0.93861 1.01525 1.02064 1.22628 0.96285 0.99777 0.94701 0.89828 1.22339 0.82521 0.98243 0.97933 1.48396 1.11340 1.63242 1.09106 1.17468 0.82477 0.78181 0.85309 1.90751 1.82781 1.55764 1.13786 1.20555 0.94924 1.00357 0.87771 1.22137 0.91279 0.97080 1.01782 1.18040 0.94424 0.98158 0.92080 1.21012 0.92059 0.99328 0.99959 1.21021 0.97735 0.97951 0.95069 1.21000 0.99139 0.99866 0.93666 1.21000 0.91356 0.96771 1.00801 1.19120 0.95271 1.03528 0.93412 1.19277 0.87070 0.92801 0.84753 1.84720 1.89559 1.39625 1.13884 1.67361 1.25639 1.13819 1.12059 1.23368 1.01565 1.02270 0.75954 1.21381 0.92282 0.93633 0.86819 0.91860 1.42322 1.86976 1.05197 1.00551 1.19244 1.42287 0.91899 0.83559 0.91038 1.24722 1.02740 0.95331 0.97829 1.69668 1.57125 1.02249 1.28978 0.86213 0.77475 0.78121 0.84542 1.21763 1.20619 1.21854 0.91302 0.93217 0.92852 0.90811 0.91392 0.82820 0.84617 0.85313 0.85331 0.84363 0.73243 0.90022 0.91648 0.77981 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.31 37.16 0.35 -1.57 16 2 C -0.11 -1.87 3.25 -88.47 -0.29 -2.16 16 3 H 0.08 1.45 8.00 -51.93 -0.42 1.03 16 4 C 0.11 1.76 6.37 -2.53 -0.02 1.75 16 5 N -0.59 -10.44 3.33 -171.60 -0.57 -11.01 16 6 C 0.58 10.35 7.83 -12.29 -0.10 10.25 16 7 O -0.55 -10.54 16.52 5.33 0.09 -10.45 16 8 C 0.09 1.46 6.71 -83.09 -0.56 0.90 16 9 C -0.10 -1.36 9.40 -38.65 -0.36 -1.73 16 10 C -0.02 -0.26 5.74 -106.84 -0.61 -0.88 16 11 C -0.11 -0.94 9.81 -39.53 -0.39 -1.32 16 12 C -0.10 -0.73 9.95 -39.90 -0.40 -1.13 16 13 C -0.12 -0.91 9.95 -39.88 -0.40 -1.30 16 14 C -0.08 -0.75 9.58 -39.58 -0.38 -1.13 16 15 C -0.11 -1.34 5.76 -106.66 -0.61 -1.95 16 16 C 0.36 5.09 7.80 -16.56 -0.13 4.96 16 17 O -0.47 -6.16 12.83 -18.17 -0.23 -6.39 16 18 N -0.47 -7.79 6.73 -9.60 -0.06 -7.85 16 19 C 0.09 1.79 5.13 -3.07 -0.02 1.77 16 20 C 0.17 3.34 3.06 -66.09 -0.20 3.14 16 21 H 0.06 1.26 8.02 -51.93 -0.42 0.84 16 22 N -0.71 -17.06 5.18 -51.65 -0.27 -17.33 16 23 C -0.24 -6.38 9.98 -15.06 -0.15 -6.53 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 27 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.07 1.12 8.04 -51.93 -0.42 0.71 16 35 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 36 H 0.15 1.85 7.59 -52.48 -0.40 1.45 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.14 1.09 7.65 -52.49 -0.40 0.69 16 41 H 0.41 3.65 9.06 45.56 0.41 4.06 16 42 H 0.08 1.73 7.26 -51.93 -0.38 1.35 16 43 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 44 H 0.39 9.90 7.71 -40.82 -0.31 9.59 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -33.06 377.17 -9.23 -42.29 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.21 Total: 12.05 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -4.36 Total: 2.69 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.18 Total: -62.75 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.15 Total: -16.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.06 -9.23 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054734731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.523 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds